Cp4.1LG15g02020 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG15g02020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG15 : 1740091 .. 1742085 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTTTCATTCAGTTGTTGACTCGGTTCATTCATCTTCTTTACTCGGGTGTCGTACACGAACAAAACTCGGAATGTGAGTTGAAATGGAGGGAGTGGAGGACAGCTTAATGACACTGATTTTGTGAAATGGAGTGAAAGAGGGAGTGGGTAGGTGTAGATTTAGGGCCACCCACTTTCTCCCTTTTGCATGTGCCTCAACCACTCTCTCCACACAGCTTCCCTTATATAAACCCTTCACTCACTCCCTTTTCACTTCAACCATTCCCAAATGGCTTCTCATAAACGCCTTTCTTCTTTTCTCTTTTTTCTTTTATTAGGAATTGGGGTTTCTTCTGCAGCCAGAAATCTCTTAACTTATGGTGAAGGAAAGCCGGTGAACATTCCGGCATTTGCTTATGGTGCAGGCGGTGGTGCAGGTGGTGGTAGTGGTGGTGGATATGGTTCTCTTGGTGGTTATGGCGGTGGTGGAGGAAATGGAGGTGGTAGTGGCTATGGTTCTGTAGGAGAATATGGTGTTGGTGGCTATGGAAGTGGTGGCGGTGGAGGAAGTGGTGAGGGAGGTGGGTATGGCCCGGGAGGTGGAAATGGATATGGTGGAGGTGGAGGAAGTGGCGGTGGAGGTGGTTATGGTTCTGGGGTTAGATATGGTGAAGTTGGATATGGCTCTGGAGGTTCAGGGTATGGTGGAGGGAGTGGAGGCGGTGCTGGGTATGGTCCTGGAGGTGGAGGGTATGGAGGTGGCGGTGGAAATGGAGGTGGGGCTGGGTATGGTCCTGGAGGTTCTGGATATGGAGGAGGTGGTGGAAATGGGGGTGGTGCAGGGTATGGTCATGAGGGTGGTGGTTATGGTGGGGGTGGCGGAAATGGCGGAGGGGCAGGGTATGGTCATGAGGGTGGTGGATATGGAGGGGGCGGTGGAAATGGCGGTGGGGCAGGGTATGGTCATGAAGGTGGTGGTGGATATGGTGGGGGTGGCGGAAATGGCGGTGGGGCAGGGTATGGTCATGAAGGTGGTGGTGGATATGGAGGTGGAGGTGGAAATGGCGGTGGCGCAGGGTACGGTCATGACGGTGGTGGATACGGTGGGGGTGGTGGAAATGGTGGTGGCGCAGGGTATGGTCATGAAGGTAGTGGATACGGTGGGGGTGGCGGAAATGGCGGTGGGGCAGGGTATGGTTCTGGTGGTGCTGGGTCTGGCGCTGGAGGAGGAGAAGGGGGAGGTTCAGGGTATGGTGGAGAACATGGAGCAGGCTACGGTGGTGGTGGTGGAGGTGGAAATGGCGGCGGTGGAGGTGTAGGATATGGGCCAGGAGGAGAATATGGGTCAGGTTATGGAAGCGGAGCAGGTGGGGGTCATGGTGGAGGAGGAGGAAGTAGTGGTGGAGGAAGCGGTGGAGGTGGTGGAGGAGGGTCGGGATACGGTGGAGGAAGTGCACATGGAGGTGCATCTGGTGGTCATGAAGGAGGATATGGAGGAAGTAGTGGTGGAGGTGGTGGTCATGAGGGAGGATATGGTGGAGGAAGCGCACATGGAGGTGCATCTGGTGGTCATGAAGGAGGATATGGAGGAAGTAGTGGTGGAGGAAGCGGTGGAGGAGGTGGTGGTCATGACGGAGGATATGGTGGTGGAAGCGCACATGGAGGTGCATCTGGTGGTCATGAAGGAGGATATGGAGGAGGAGGTGGTAGCAGCCAAGGCGGTGACCACGGTGGATATGCACCTTGAGAAAGACCTCACCATTACCTTATATATTTAGTATTATTATAAAAAGGGCATATACATATGGTCATTCATCCTTTTTACCCCAAGTAATTAATAGAAAATATAAATCCATGATTGGGAAAAGGGAATAATTAATTATATAATATATCGTAAGAAAAGTGTGATGTTAAAATGGGAAACTCTTGTATCTTCACCTCTCCAAATTTTCTTCATATATAAAATTATTCTCTCTTATTTCCACAAAACCACACCAATTGCATGCATGCTCCCT

mRNA sequence

TCGTTTCATTCAGTTGTTGACTCGGTTCATTCATCTTCTTTACTCGGGTGTCGTACACGAACAAAACTCGGAATGTGAGTTGAAATGGAGGGAGTGGAGGACAGCTTAATGACACTGATTTTGTGAAATGGAGTGAAAGAGGGAGTGGGTAGGTGTAGATTTAGGGCCACCCACTTTCTCCCTTTTGCATGTGCCTCAACCACTCTCTCCACACAGCTTCCCTTATATAAACCCTTCACTCACTCCCTTTTCACTTCAACCATTCCCAAATGGCTTCTCATAAACGCCTTTCTTCTTTTCTCTTTTTTCTTTTATTAGGAATTGGGGTTTCTTCTGCAGCCAGAAATCTCTTAACTTATGGTGAAGGAAAGCCGGTGAACATTCCGGCATTTGCTTATGGTGCAGGCGGTGGTGCAGGTGGTGGTAGTGGTGGTGGATATGGTTCTCTTGGTGGTTATGGCGGTGGTGGAGGAAATGGAGGTGGTAGTGGCTATGGTTCTGTAGGAGAATATGGTGTTGGTGGCTATGGAAGTGGTGGCGGTGGAGGAAGTGGTGAGGGAGGTGGGTATGGCCCGGGAGGTGGAAATGGATATGGTGGAGGTGGAGGAAGTGGCGGTGGAGGTGGTTATGGTTCTGGGGTTAGATATGGTGAAGTTGGATATGGCTCTGGAGGTTCAGGGTATGGTGGAGGGAGTGGAGGCGGTGCTGGGTATGGTCCTGGAGGTGGAGGGTATGGAGGTGGCGGTGGAAATGGAGGTGGGGCTGGGTATGGTCCTGGAGGTTCTGGATATGGAGGAGGTGGTGGAAATGGGGGTGGTGCAGGGTATGGTCATGAGGGTGGTGGTTATGGTGGGGGTGGCGGAAATGGCGGAGGGGCAGGGTATGGTCATGAGGGTGGTGGATATGGAGGGGGCGGTGGAAATGGCGGTGGGGCAGGGTATGGTCATGAAGGTGGTGGTGGATATGGTGGGGGTGGCGGAAATGGCGGTGGGGCAGGGTATGGTCATGAAGGTGGTGGTGGATATGGAGGTAGTGGATACGGTGGGGGTGGCGGAAATGGCGGTGGGGCAGGGTATGGTTCTGGTGGTGCTGGGTCTGGCGCTGGAGGAGGAGAAGGGGGAGGTTCAGGGTATGGTGGAGAACATGGAGCAGGCTACGGTGGTGGTGGTGGAGGTGGAAATGGCGGCGGTGGAGGTGTAGGATATGGGCCAGGAGGAGAATATGGGTCAGGTTATGGAAGCGGAGCAGGTGGGGGTCATGGTGGAGGAGGAGGAAGTAGTGGTGGAGGAAGCGGTGGAGGTGGTGGAGGAGGGTCGGGATACGGTGGAGGAAGTGCACATGGAGGTGCATCTGGTGGTCATGAAGGAGGATATGGAGGAAGTAGTGGTGGAGGTGGTGGTCATGAGGGAGGATATGGTGGAGGAAGCGCACATGGAGGTGCATCTGGTGGTCATGAAGGAGGATATGGAGGAAGTAGTGGTGGAGGAAGCGGTGGAGGAGGTGGTGGTCATGACGGAGGATATGGTGGTGGAAGCGCACATGGAGGTGCATCTGGTGGTCATGAAGGAGGATATGGAGGAGGAGGTGGTAGCAGCCAAGGCGGTGACCACGGTGGATATGCACCTTGAGAAAGACCTCACCATTACCTTATATATTTAGTATTATTATAAAAAGGGCATATACATATGGTCATTCATCCTTTTTACCCCAAGTAATTAATAGAAAATATAAATCCATGATTGGGAAAAGGGAATAATTAATTATATAATATATCGTAAGAAAAGTGTGATGTTAAAATGGGAAACTCTTGTATCTTCACCTCTCCAAATTTTCTTCATATATAAAATTATTCTCTCTTATTTCCACAAAACCACACCAATTGCATGCATGCTCCCT

Coding sequence (CDS)

ATGGCTTCTCATAAACGCCTTTCTTCTTTTCTCTTTTTTCTTTTATTAGGAATTGGGGTTTCTTCTGCAGCCAGAAATCTCTTAACTTATGGTGAAGGAAAGCCGGTGAACATTCCGGCATTTGCTTATGGTGCAGGCGGTGGTGCAGGTGGTGGTAGTGGTGGTGGATATGGTTCTCTTGGTGGTTATGGCGGTGGTGGAGGAAATGGAGGTGGTAGTGGCTATGGTTCTGTAGGAGAATATGGTGTTGGTGGCTATGGAAGTGGTGGCGGTGGAGGAAGTGGTGAGGGAGGTGGGTATGGCCCGGGAGGTGGAAATGGATATGGTGGAGGTGGAGGAAGTGGCGGTGGAGGTGGTTATGGTTCTGGGGTTAGATATGGTGAAGTTGGATATGGCTCTGGAGGTTCAGGGTATGGTGGAGGGAGTGGAGGCGGTGCTGGGTATGGTCCTGGAGGTGGAGGGTATGGAGGTGGCGGTGGAAATGGAGGTGGGGCTGGGTATGGTCCTGGAGGTTCTGGATATGGAGGAGGTGGTGGAAATGGGGGTGGTGCAGGGTATGGTCATGAGGGTGGTGGTTATGGTGGGGGTGGCGGAAATGGCGGAGGGGCAGGGTATGGTCATGAGGGTGGTGGATATGGAGGGGGCGGTGGAAATGGCGGTGGGGCAGGGTATGGTCATGAAGGTGGTGGTGGATATGGTGGGGGTGGCGGAAATGGCGGTGGGGCAGGGTATGGTCATGAAGGTGGTGGTGGATATGGAGGTAGTGGATACGGTGGGGGTGGCGGAAATGGCGGTGGGGCAGGGTATGGTTCTGGTGGTGCTGGGTCTGGCGCTGGAGGAGGAGAAGGGGGAGGTTCAGGGTATGGTGGAGAACATGGAGCAGGCTACGGTGGTGGTGGTGGAGGTGGAAATGGCGGCGGTGGAGGTGTAGGATATGGGCCAGGAGGAGAATATGGGTCAGGTTATGGAAGCGGAGCAGGTGGGGGTCATGGTGGAGGAGGAGGAAGTAGTGGTGGAGGAAGCGGTGGAGGTGGTGGAGGAGGGTCGGGATACGGTGGAGGAAGTGCACATGGAGGTGCATCTGGTGGTCATGAAGGAGGATATGGAGGAAGTAGTGGTGGAGGTGGTGGTCATGAGGGAGGATATGGTGGAGGAAGCGCACATGGAGGTGCATCTGGTGGTCATGAAGGAGGATATGGAGGAAGTAGTGGTGGAGGAAGCGGTGGAGGAGGTGGTGGTCATGACGGAGGATATGGTGGTGGAAGCGCACATGGAGGTGCATCTGGTGGTCATGAAGGAGGATATGGAGGAGGAGGTGGTAGCAGCCAAGGCGGTGACCACGGTGGATATGCACCTTGA

Protein sequence

MASHKRLSSFLFFLLLGIGVSSAARNLLTYGEGKPVNIPAFAYGAGGGAGGGSGGGYGSLGGYGGGGGNGGGSGYGSVGEYGVGGYGSGGGGGSGEGGGYGPGGGNGYGGGGGSGGGGGYGSGVRYGEVGYGSGGSGYGGGSGGGAGYGPGGGGYGGGGGNGGGAGYGPGGSGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGGYGGGGGNGGGAGYGHEGGGGYGGSGYGGGGGNGGGAGYGSGGAGSGAGGGEGGGSGYGGEHGAGYGGGGGGGNGGGGGVGYGPGGEYGSGYGSGAGGGHGGGGGSSGGGSGGGGGGGSGYGGGSAHGGASGGHEGGYGGSSGGGGGHEGGYGGGSAHGGASGGHEGGYGGSSGGGSGGGGGGHDGGYGGGSAHGGASGGHEGGYGGGGGSSQGGDHGGYAP

Homology

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BLAST of Cp4.1LG15g02020 vs. TrEMBL
Match: A0A0A0LH77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902220 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.1e-46
Identity = 294/400 (73.50%), Postives = 303/400 (75.75%), Query Frame = 1


Query: 1   MASHKRLSSFLFFLLLGIGVSSAARNLLTYGEGKPVNIPAFAYGAGGGAGGGSGGGYGSL 60
           MASHK  S  LFFLLLGIGVS AAR LLTYG G PVNIPAFAYGAG G GGGSGGGYG L
Sbjct: 1   MASHKFSSFVLFFLLLGIGVSYAARTLLTYGGG-PVNIPAFAYGAGNGGGGGSGGGYGPL 60

Query: 61  GGYGGGGGNGGGSGYGSVG-EYGVGGYGSGGGGGSGEGGGYGPGGGNGYGGGGGSGGGGG 120
           GG GGG G+GGG  Y SVG +YGVGGYGSGGGGGSG G GYGP GG G GGGGGSGGG  
Sbjct: 61  GGGGGGYGSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGGSA 120

Query: 121 YGSGVRYGEVGYGSGGSGYG--GGSGGGAGYGPGGGGYGGGGGNGGGAGYGP------GG 180
           YG G           GS YG  GGSGGG GYGPGGGGYGGGGGNGGGA YGP      GG
Sbjct: 121 YGHG-----------GSAYGGGGGSGGGGGYGPGGGGYGGGGGNGGGASYGPGEGSGYGG 180

Query: 181 SGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGG 240
            GYGGGGG+GGG GYG  GGGYGGGGGNGGGAGYG  G GYGGGGGNGGGAGYGHE G G
Sbjct: 181 VGYGGGGGSGGGVGYGPGGGGYGGGGGNGGGAGYGLGGAGYGGGGGNGGGAGYGHE-GAG 240

Query: 241 YGGGGGNGGGAGYGHEGGGGYGGSGYGGGGGNGGGAGYGSGG-------AGSGAGGGEGG 300
           YGGGGGNGGGA YG   G GYGG G G GGG+  G   G+GG        G G  GG  G
Sbjct: 241 YGGGGGNGGGASYGPGEGSGYGGVGGGNGGGHESGGYGGNGGNGGSHESGGYGGSGGNSG 300

Query: 301 GSGYGGEHGAGYGGGGGGGNGGGGGVGYGPGGEYGSGYGSGAGGGHGGGGGSSGGGSGGG 360
           G+GYGGEHGAGYGGGGG G GGGGG G G GGEYGSGYGSGAGGGHG GGG++GGGSGGG
Sbjct: 301 GAGYGGEHGAGYGGGGGNGGGGGGGAGSGSGGEYGSGYGSGAGGGHGAGGGNNGGGSGGG 360

Query: 361 GGGGSGYGGGSAHGGASGGHEGGYGGSSGGGGGHEGGYGG 385
           GGGGSGYGGGSAHGGA GGHE G G   GGG G  GG+GG
Sbjct: 361 GGGGSGYGGGSAHGGAYGGHEEGNGYGGGGGSGQGGGHGG 387

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BLAST of Cp4.1LG15g02020 vs. TrEMBL
Match: F6HT88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01350 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.9e-09
Identity = 238/382 (62.30%), Postives = 258/382 (67.54%), Query Frame = 1


Query: 1   MASHKRLSSFLFFLLLGIGVSSAARNLLTYGEGKPVNIPAFAYGAGGGAGGGSGGGYGSL 60
           MA+H+ +S+ +FF+LL IG+ SA R LLT+ EG+        +G GGG GGGSG G G  
Sbjct: 88  MATHRAVSA-VFFVLLSIGICSATRALLTF-EGEAGY--GTGHGIGGGGGGGSGSGGGFP 147

Query: 61  GGYGGGGGNGGGSGYGSVGEYGVGGYGSGGGGGSGEGGGYGPGG--GNGYGGGGGSGGGG 120
           GGYGGGGG+GGG GYG+VG YG GG   GGGGG G GGGYG GG  G GYG GGGSGGG 
Sbjct: 148 GGYGGGGGSGGGGGYGAVGGYGSGG---GGGGGGGSGGGYGAGGIHGGGYGSGGGSGGGI 207

Query: 121 GYGSGVRYGEVGYGSGGSGYGGGSGGGAGYGPGGGGYGGGGGNGGGAGYGPGGSGYGGGG 180
           GYG+G  +G      GG G GGG+GGG GYG GGGG GG GG G  AG   GG GYG GG
Sbjct: 208 GYGAGGEHG------GGGGSGGGAGGGVGYGSGGGGSGGAGG-GYPAGPEHGG-GYGSGG 267

Query: 181 GNGGGAGYG---HEGGGYGGGGGNGGGAGYG---HEGGGYG--------GGGGNGGGAGY 240
           G GGGAGYG     GGGYGGG G GGG GYG     GGGYG        GGGG+GGG GY
Sbjct: 268 GQGGGAGYGGGGEHGGGYGGGSGGGGGVGYGAGGEHGGGYGTGEGAGGGGGGGSGGGTGY 327

Query: 241 GHEG--GGGYGGGGGNGGGAGYGHEGGGGYGGSGYGGGGGNGGGAGYGSG---GAGSGAG 300
           G  G  GGGYG GGG+GGG GY   G GG  G GYGGGGG+GGG GYG G   GAG G+G
Sbjct: 328 GAGGEHGGGYGSGGGSGGGTGY---GAGGEHGGGYGGGGGSGGGTGYGDGGDHGAGYGSG 387

Query: 301 GGEGGGSGY--GGEHGAGYGGGGGGGNGGGGGVGYGPGGEYGSGYGSGAGGGHGGGGGSS 360
           GG GGG GY  GGEHG GY    GGGNGGGGGVGYG GGE+G GYG G G G G G GS 
Sbjct: 388 GGSGGGIGYGAGGEHGGGY----GGGNGGGGGVGYGAGGEHGGGYGRGGGSGGGAGAGS- 443

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BLAST of Cp4.1LG15g02020 vs. TrEMBL
Match: A0A169WK47_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_005637 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-06
Identity = 275/441 (62.36%), Postives = 286/441 (64.85%), Query Frame = 1


Query: 42  AYGAGGGAGGGSGGGYGSL--GGYGGGGGNGGGSGYGSVGEYGVGGYGSGGGGGSGEGGG 101
           AYG GGG GGG G G G    G YGGGGGNGGG GYG+ GE+G G YG  GGGG+G GGG
Sbjct: 227 AYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHG-GAYG--GGGGNGGGGG 286

Query: 102 YGPGG--GNGYGGGGGSGGGGGYGSGVRYGEVGYGSGGSGYGGGSGGGAGYGPGG---GG 161
           YG GG  G  YGGGGG+GGGGGYG+G  +G      G  G GGG+GGG GYG GG   G 
Sbjct: 287 YGAGGEHGGAYGGGGGNGGGGGYGAGGEHG------GAYGGGGGNGGGGGYGAGGEHGGA 346

Query: 162 YGGGGGNGGGAGYGPGGS---GYGGGGGNGGGAGYG---HEGGGYGGGGGNGGGAGYG-- 221
           YGGGGGNGGG GYG GG     YGGGGGNGGG GYG     GG YGGGGGNGGG GYG  
Sbjct: 347 YGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAG 406

Query: 222 -HEGGGYGGGGGNGGGAGYGHEG--GGGYGGGGGNGGGAGYGHEGGGGYGGSGYGGGGGN 281
              GG YGGGGGNGGG GYG  G  GG YGGGGGNGGG GY   G GG  G  YGGGGGN
Sbjct: 407 GEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGY---GAGGEHGGAYGGGGGN 466

Query: 282 GGGAGYGSGGAGSGA---GGGEGGGSGY--GGEHGAGYGGGGGGGNGGGGGVGYGPGGEY 341
           GGG GYG+GG   GA   GGG GGG GY  GGEHG  YGGGGG G GGG G G   GG Y
Sbjct: 467 GGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGAY 526

Query: 342 GSGYGSGAGGGHGGGGGSSGG-GSGGGGGGGSGYGGGSAHGGASGGHEGGYGGSSGGGGG 401
           G G G+G GGG+G GG   G  G GGG GGG GYG G  HGGA       YGG  G GGG
Sbjct: 527 GGGGGNGGGGGYGAGGEHGGAYGGGGGNGGGGGYGAGGEHGGA-------YGGGGGNGGG 586

Query: 402 HEGGYGGGSAHGGASGGHEGGYGGSSGGGSGGGGGGHDGGYGGGSAHGGASGGHEGGY-- 453
             GGYG G  HGGA GG     GG+ GGG  G GG H GGYGGG   GG SGG  GGY  
Sbjct: 587 --GGYGAGGEHGGAYGGG----GGNGGGGGYGTGGEHGGGYGGGGGAGGGSGG--GGYGP 640

[Close]

BLAST of Cp4.1LG15g02020 vs. NCBI nr
Match: gi|700205246|gb|KGN60379.1| (hypothetical protein Csa_3G902220 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 294/400 (73.50%), Postives = 303/400 (75.75%), Query Frame = 1


Query: 1   MASHKRLSSFLFFLLLGIGVSSAARNLLTYGEGKPVNIPAFAYGAGGGAGGGSGGGYGSL 60
           MASHK  S  LFFLLLGIGVS AAR LLTYG G PVNIPAFAYGAG G GGGSGGGYG L
Sbjct: 1   MASHKFSSFVLFFLLLGIGVSYAARTLLTYGGG-PVNIPAFAYGAGNGGGGGSGGGYGPL 60

Query: 61  GGYGGGGGNGGGSGYGSVG-EYGVGGYGSGGGGGSGEGGGYGPGGGNGYGGGGGSGGGGG 120
           GG GGG G+GGG  Y SVG +YGVGGYGSGGGGGSG G GYGP GG G GGGGGSGGG  
Sbjct: 61  GGGGGGYGSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGGSA 120

Query: 121 YGSGVRYGEVGYGSGGSGYG--GGSGGGAGYGPGGGGYGGGGGNGGGAGYGP------GG 180
           YG G           GS YG  GGSGGG GYGPGGGGYGGGGGNGGGA YGP      GG
Sbjct: 121 YGHG-----------GSAYGGGGGSGGGGGYGPGGGGYGGGGGNGGGASYGPGEGSGYGG 180

Query: 181 SGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGG 240
            GYGGGGG+GGG GYG  GGGYGGGGGNGGGAGYG  G GYGGGGGNGGGAGYGHE G G
Sbjct: 181 VGYGGGGGSGGGVGYGPGGGGYGGGGGNGGGAGYGLGGAGYGGGGGNGGGAGYGHE-GAG 240

Query: 241 YGGGGGNGGGAGYGHEGGGGYGGSGYGGGGGNGGGAGYGSGG-------AGSGAGGGEGG 300
           YGGGGGNGGGA YG   G GYGG G G GGG+  G   G+GG        G G  GG  G
Sbjct: 241 YGGGGGNGGGASYGPGEGSGYGGVGGGNGGGHESGGYGGNGGNGGSHESGGYGGSGGNSG 300

Query: 301 GSGYGGEHGAGYGGGGGGGNGGGGGVGYGPGGEYGSGYGSGAGGGHGGGGGSSGGGSGGG 360
           G+GYGGEHGAGYGGGGG G GGGGG G G GGEYGSGYGSGAGGGHG GGG++GGGSGGG
Sbjct: 301 GAGYGGEHGAGYGGGGGNGGGGGGGAGSGSGGEYGSGYGSGAGGGHGAGGGNNGGGSGGG 360

Query: 361 GGGGSGYGGGSAHGGASGGHEGGYGGSSGGGGGHEGGYGG 385
           GGGGSGYGGGSAHGGA GGHE G G   GGG G  GG+GG
Sbjct: 361 GGGGSGYGGGSAHGGAYGGHEEGNGYGGGGGSGQGGGHGG 387

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BLAST of Cp4.1LG15g02020 vs. NCBI nr
Match: gi|778687914|ref|XP_011652648.1| (PREDICTED: glycine-rich cell wall structural protein 1.8 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 1.0e-41
Identity = 283/391 (72.38%), Postives = 291/391 (74.42%), Query Frame = 1


Query: 1   MASHKRLSSFLFFLLLGIGVSSAARNLLTYGEGKPVNIPAFAYGAGGGAGGGSGGGYGSL 60
           MASHK  S  LFFLLLGIGVS AAR LLTYG G PVNIPAFAYGAG G GGGSGGGYG L
Sbjct: 1   MASHKFSSFVLFFLLLGIGVSYAARTLLTYGGG-PVNIPAFAYGAGNGGGGGSGGGYGPL 60

Query: 61  GGYGGGGGNGGGSGYGSVG-EYGVGGYGSGGGGGSGEGGGYGPGGGNGYGGGGGSGGGGG 120
           GG GGG G+GGG  Y SVG +YGVGGYGSGGGGGSG G GYGP GG G GGGGGSGGG  
Sbjct: 61  GGGGGGYGSGGGGSYSSVGVQYGVGGYGSGGGGGSGGGEGYGPSGGYGGGGGGGSGGGSA 120

Query: 121 YGSGVRYGEVGYGSGGSGYGGGSGGGAGYGPGGGGYGGGGGNGGGAGYGP------GGSG 180
           Y         G+G    G GGGSGGG GYGPGGGGYGGGGGNGGGA YGP      GG G
Sbjct: 121 Y---------GHGGSAYGGGGGSGGGGGYGPGGGGYGGGGGNGGGASYGPGEGSGYGGVG 180

Query: 181 YGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGYGGGGGNGGGAGYGHEGGGGYG 240
           YGGGGG+GGG GYG  GGGYGGGGGNGGGAGYG  G GYGGGGGNGG    GHE  GGYG
Sbjct: 181 YGGGGGSGGGVGYGPGGGGYGGGGGNGGGAGYGLGGAGYGGGGGNGG----GHE-SGGYG 240

Query: 241 GGGGNGGGAGYGHEGGGGYGGSGYGGGGGNGGGAGYGSGGAGSGAGGGEGGGSGYGGEHG 300
           G GGNGG    GHE G      GYGG GGNGG    G    G G  GG  GG+GYGGEHG
Sbjct: 241 GSGGNGG----GHESG------GYGGNGGNGGSHESG----GYGGSGGNSGGAGYGGEHG 300

Query: 301 AGYGGGGGGGNGGGGGVGYGPGGEYGSGYGSGAGGGHGGGGGSSGGGSGGGGGGGSGYGG 360
           AGYGGGGG G GGGGG G G GGEYGSGYGSGAGGGHG GGG++GGGSGGGGGGGSGYGG
Sbjct: 301 AGYGGGGGNGGGGGGGAGSGSGGEYGSGYGSGAGGGHGAGGGNNGGGSGGGGGGGSGYGG 360

Query: 361 GSAHGGASGGHEGGYGGSSGGGGGHEGGYGG 385
           GSAHGGA GGHE G G   GGG G  GG+GG
Sbjct: 361 GSAHGGAYGGHEEGNGYGGGGGSGQGGGHGG 362

[Close]

BLAST of Cp4.1LG15g02020 vs. NCBI nr
Match: gi|359474475|ref|XP_002278025.2| (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Vitis vinifera])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 238/382 (62.30%), Postives = 258/382 (67.54%), Query Frame = 1


Query: 1   MASHKRLSSFLFFLLLGIGVSSAARNLLTYGEGKPVNIPAFAYGAGGGAGGGSGGGYGSL 60
           MA+H+ +S+ +FF+LL IG+ SA R LLT+ EG+        +G GGG GGGSG G G  
Sbjct: 1   MATHRAVSA-VFFVLLSIGICSATRALLTF-EGEAGY--GTGHGIGGGGGGGSGSGGGFP 60

Query: 61  GGYGGGGGNGGGSGYGSVGEYGVGGYGSGGGGGSGEGGGYGPGG--GNGYGGGGGSGGGG 120
           GGYGGGGG+GGG GYG+VG YG GG   GGGGG G GGGYG GG  G GYG GGGSGGG 
Sbjct: 61  GGYGGGGGSGGGGGYGAVGGYGSGG---GGGGGGGSGGGYGAGGIHGGGYGSGGGSGGGI 120

Query: 121 GYGSGVRYGEVGYGSGGSGYGGGSGGGAGYGPGGGGYGGGGGNGGGAGYGPGGSGYGGGG 180
           GYG+G  +G      GG G GGG+GGG GYG GGGG GG GG G  AG   GG GYG GG
Sbjct: 121 GYGAGGEHG------GGGGSGGGAGGGVGYGSGGGGSGGAGG-GYPAGPEHGG-GYGSGG 180

Query: 181 GNGGGAGYG---HEGGGYGGGGGNGGGAGYG---HEGGGYG--------GGGGNGGGAGY 240
           G GGGAGYG     GGGYGGG G GGG GYG     GGGYG        GGGG+GGG GY
Sbjct: 181 GQGGGAGYGGGGEHGGGYGGGSGGGGGVGYGAGGEHGGGYGTGEGAGGGGGGGSGGGTGY 240

Query: 241 GHEG--GGGYGGGGGNGGGAGYGHEGGGGYGGSGYGGGGGNGGGAGYGSGG---AGSGAG 300
           G  G  GGGYG GGG+GGG GYG    GG  G GYGGGGG+GGG GYG GG   AG G+G
Sbjct: 241 GAGGEHGGGYGSGGGSGGGTGYG---AGGEHGGGYGGGGGSGGGTGYGDGGDHGAGYGSG 300

Query: 301 GGEGGGSGY--GGEHGAGYGGGGGGGNGGGGGVGYGPGGEYGSGYGSGAGGGHGGGGGSS 360
           GG GGG GY  GGEHG GY    GGGNGGGGGVGYG GGE+G GYG G G G G G GS 
Sbjct: 301 GGSGGGIGYGAGGEHGGGY----GGGNGGGGGVGYGAGGEHGGGYGRGGGSGGGAGAGS- 356

[Close]

BLAST of Cp4.1LG15g02020 vs. NCBI nr
Match: gi|645265635|ref|XP_008238243.1| (PREDICTED: LOW QUALITY PROTEIN: glycine-rich cell wall structural protein 1.8-like [Prunus mume])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 158/256 (61.72%), Postives = 176/256 (68.75%), Query Frame = 1


Query: 9   SFLFFLLLGIGVSSAARNLLTYGEGKPVNIPAFAYGAGGGAGGGSGGGYGS--------L 68
           SF+FF+LLGIG+ SAAR LL Y E  PV++PA +YG G G+GGG G GYG          
Sbjct: 8   SFVFFVLLGIGICSAARTLLHYEE--PVHVPAVSYGTGHGSGGGGGSGYGGGGAAGYGGA 67

Query: 69  GGYGGGGGNGGGSGYGSVGEYGVGGYGSGGGGGSGEGGGYGPGGGNGYGGGGGSGGGGGY 128
           GGYGGGGG G G GYG+VGE+G  GYG G GGG G G  YG  GG+G GGGGGSGGGG Y
Sbjct: 68  GGYGGGGGAGSGGGYGAVGEHGAAGYGGGSGGGEGGGVAYGGAGGHGGGGGGGSGGGGAY 127

Query: 129 GSGVRYGEVGYGSGGSGYGGGSGGGAGYGPGG-----GGYGGGGGNGGGAGY-GPGGSGY 188
           G+G        G+GG G GGG GGGAGYG GG     GG GGG G GGG+GY G  GSGY
Sbjct: 128 GTG--------GAGGYGSGGGEGGGAGYGAGGEHGVGGGGGGGTGGGGGSGYAGEHGSGY 187

Query: 189 GGG--GGNGGGAGYGHE-GGGYGGGGGNGGGAGYGHEGGGY--GGGGGNGGGAGYGHEGG 246
           GGG  GG GGG G G E GGGYGGGGG+GGGAG G+  GG   GGGGG+GGG+GYG   G
Sbjct: 188 GGGAGGGAGGGYGAGGEHGGGYGGGGGHGGGAGGGYVAGGASGGGGGGSGGGSGYGGAHG 247

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g02020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g02020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH77_CUCSA	8.1e-46	73.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902220 PE=4 SV=1	[more]
F6HT88_VITVI	7.9e-09	62.30	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01350 PE=4 SV=...	[more]
A0A169WK47_DAUCA	8.2e-06	62.36	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_005637 PE=4 SV=1	[more]

BLAST of Cp4.1LG15g02020 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g02020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205246\|gb\|KGN60379.1\|	1.2e-45	73.50	hypothetical protein Csa_3G902220 [Cucumis sativus]	[more]
gi\|778687914\|ref\|XP_011652648.1\|	1.0e-41	72.38	PREDICTED: glycine-rich cell wall structural protein 1.8 [Cucumis sativus]	[more]
gi\|359474475\|ref\|XP_002278025.2\|	1.1e-08	62.30	PREDICTED: glycine-rich cell wall structural protein 1.8-like [Vitis vinifera]	[more]
gi\|645265635\|ref\|XP_008238243.1\|	2.4e-06	61.72	PREDICTED: LOW QUALITY PROTEIN: glycine-rich cell wall structural protein 1.8-li...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g02020.1	Cp4.1LG15g02020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 131..141 score: 3.5E-10coord: 171..189 score: 3.5E-10coord: 7..23 score: 3.5E-10coord: 103..118 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG15g02020	Wax gourd	cpewgoB0319
Cp4.1LG15g02020	Cucurbita pepo (Zucchini)	cpecpeB231
Cp4.1LG15g02020	Cucurbita pepo (Zucchini)	cpecpeB268
Cp4.1LG15g02020	Cucurbita pepo (Zucchini)	cpecpeB273
Cp4.1LG15g02020	Cucurbita pepo (Zucchini)	cpecpeB285
Cp4.1LG15g02020	Cucumber (Gy14) v1	cgycpeB0817
Cp4.1LG15g02020	Cucumber (Gy14) v1	cgycpeB0848
Cp4.1LG15g02020	Cucurbita maxima (Rimu)	cmacpeB120
Cp4.1LG15g02020	Cucurbita maxima (Rimu)	cmacpeB349
Cp4.1LG15g02020	Cucurbita maxima (Rimu)	cmacpeB522
Cp4.1LG15g02020	Cucurbita maxima (Rimu)	cmacpeB615
Cp4.1LG15g02020	Cucurbita maxima (Rimu)	cmacpeB819
Cp4.1LG15g02020	Cucurbita moschata (Rifu)	cmocpeB094
Cp4.1LG15g02020	Cucurbita moschata (Rifu)	cmocpeB310
Cp4.1LG15g02020	Cucurbita moschata (Rifu)	cmocpeB481
Cp4.1LG15g02020	Cucurbita moschata (Rifu)	cmocpeB564
Cp4.1LG15g02020	Cucurbita moschata (Rifu)	cmocpeB773
Cp4.1LG15g02020	Wild cucumber (PI 183967)	cpecpiB243
Cp4.1LG15g02020	Wild cucumber (PI 183967)	cpecpiB245
Cp4.1LG15g02020	Cucumber (Chinese Long) v2	cpecuB239
Cp4.1LG15g02020	Cucumber (Chinese Long) v2	cpecuB241
Cp4.1LG15g02020	Bottle gourd (USVL1VR-Ls)	cpelsiB190
Cp4.1LG15g02020	Bottle gourd (USVL1VR-Ls)	cpelsiB206
Cp4.1LG15g02020	Bottle gourd (USVL1VR-Ls)	cpelsiB218
Cp4.1LG15g02020	Watermelon (Charleston Gray)	cpewcgB216
Cp4.1LG15g02020	Watermelon (Charleston Gray)	cpewcgB227
Cp4.1LG15g02020	Watermelon (97103) v1	cpewmB235
Cp4.1LG15g02020	Watermelon (97103) v1	cpewmB249
Cp4.1LG15g02020	Melon (DHL92) v3.5.1	cpemeB232
Cp4.1LG15g02020	Melon (DHL92) v3.5.1	cpemeB240
Cp4.1LG15g02020	Cucumber (Gy14) v2	cgybcpeB332
Cp4.1LG15g02020	Cucumber (Gy14) v2	cgybcpeB334
Cp4.1LG15g02020	Melon (DHL92) v3.6.1	cpemedB271
Cp4.1LG15g02020	Melon (DHL92) v3.6.1	cpemedB281
Cp4.1LG15g02020	Silver-seed gourd	carcpeB0703
Cp4.1LG15g02020	Silver-seed gourd	carcpeB1094
Cp4.1LG15g02020	Silver-seed gourd	carcpeB1335
Cp4.1LG15g02020	Silver-seed gourd	carcpeB1344
Cp4.1LG15g02020	Cucumber (Chinese Long) v3	cpecucB0298
Cp4.1LG15g02020	Cucumber (Chinese Long) v3	cpecucB0300