Cp4.1LG15g01850 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g01850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein family
LocationCp4.1LG15 : 1504820 .. 1507430 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGGACATCAGTCCTTAACCACAACCATCATTTATTGCCCTCTAAAGACATACAACAAAGTTTAGATTTGAGTTTGAAGCAGAAGGAGCAGGAATGTTTGTGCCTTCTAAAGAAATGCAAGAGCTTAGAAGAATTCAAACAAGTTCATGTTCAAATTCTGAAGTTGGGTCTTTTCTGGGATTCTTTCTGCTCAAGCAGTCTTTTGAGCACTTGTGCGCTCTCAGATTGGAGCAGCATGGACTATGCCTGCTCCATTTTCCAACAGCTAGATGAACCTACCACATTTCATTTCAACACAATGATCAAAGGCTATGTTAACAACATGAACTTTGAGAGTGCTCTAAATCTGTATGCCGATATGTTTCAAAGAGAAGTAGAACCCGACAACTTCACGTACCCGGTAGTTCTCAAGGCTTGTGCTCGGTTAGCAGCGATCGAGGAAGGGATGCAGATTCATGGTCATGTATTCAAGCTAGGTTTGGAAGATGATCTATTTGTACAGAATAGCTTAATCAATATGTATGGGAAATGTGGGGATATCGAACTGTCTTGTGCTGTTTTTCGACGTATGGAGGAAAAGAGTGTGGCTTCTTGGAGTGCTATAATTTCAGCTCATGCTCGTGTTGGATTGTGGCGGGAATGTTTGATGTTGTTTGAGGATATGAGTACAGAAGGATGTTGGAGGGCTGAGGAAAGTATATTAGTCAGTGTGGTCTCTGCTTGCACCCATTTGGGTGCTCTTCATTTAGGAAGATGTGCCCATGGTGCTCTATTGAGAAACATAACTGAACTAAATGTTGCGGTTAGGACTTCCTTAATGGATATGTATGTGAAATGTGGGTCGCTTCAGAAAGGATTATGTCTCTTCCAGAACATGACCAAAAGGAATCAACTATCCTATAGTGTCATAATCTCAGGGCTTGGCTTACATGGACATGGTAGACAAGCTCTAAGAATCTTCTCAGAAATGGTTGAAGAAGGCTTAGAGCCTGATGATGTTATCTATGTTGGTGTGCTTAGCGCTTGTAGTCATTCCGGCCTTGTCGAAGAAGGTCTTGATCTCTTCAATAGGATGAAGAACGAGTGCGGGATTAAACCAACAATGCAGCATTATGGCTGCGTGGTAGACCTGATGGGACGAGCTGGTTTGCTTGAAGAAGCATTTGAGCTTGTGAAAGGTATGCCTATAAAAGCAAACGATATAATTTGGCGGAGTATTCTAAGTGCTTGTAAGATTCATGACAACTTAAAGCTTGGTGAGGTAGCTGCAGAGAATCTATTTCGATCGTCTTCGCATAATCCTAGCGATTACCTAGTTTTGTCTAATATGTATGCAAGAGCTCAACAATGGGAGAATGTAGCTAAGATCAGGACAAAAATGTTCGATGATGGCTTTGTCCAGACACCAGGGTATAGCTTGGTGGAGGTGAAAAGGAAGGTATACCAATTTGTTTCACAGGATAAATCGAACTGCAAATCGGGTAAAATCTACGAGATGATTCATCAGATGGAATGGCAATTGAGATTTGAAGGCTATATGGCAGATACATCACAGGTTATGCTTAACGTAGATGAAGAAGAAAAGAGAGAGAGATTGAAAGGTCATAGCCAGAAGTTGGCTATAGCTTTTGCGCTCATTCATACTTCACAGGGATCTGCAATAAGGATAACTAGAAACCTGAGAATGTGTACTGACTGTCATACATACACTAAACTGATTTCAATGATCTATGAACGAGAAATTACTGTAAGAGACCGGAATCGGTTCCACCGTTTTAAAGATGGAAACTGCTCGTGTAGGGATTACTGGTGAATCACTGAACTGTTCAACTATGATTTATGGGAGAAAAACTTTCCCATATATTTTTATTTTGAATCTCTAGAATGTCTCAGCAGCTAGTGTTAGGAATCACGGCTCTCTACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTAGTTTTGCTTTGAGCTTCCCAAAAGGCCTCGTACCAATGAAGATGTATTCCTTACTTACAAACCTATGATCATTCCCTAAATCAGCCAATGTGGGACTCCCTCCCAACAATCTTCCCCTCAAACAAAGTACACCATAGAGCCTCCCCGGAGGTCGATGTAGCCCTCGACAGTCTCCCCTTAATCGAGACTCGACTCTTTCTCTAGAGCCCTCGAACAAAGTACACCCTTTGTTCGACACATGAGTCACTTTTGACTAGACCTTCGAGGCTAGCAATTTATTTGTTCAACACTTGAGGATTTGATTGATATGGCTTAACTAAGGGCATGATTCTGATACCATGTTAGGAATCACAGATCTCCACAATGGTATAATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAGGGCCTCATACCAATAGATATATTTCTTACTTATAAACCCATGATCATTCCGTAAATTAGCCAATGTGAGACTCATTCCCAACAATCCTTGACCGTTAGCACCTAGGGAGGAAGAAATGGTAGGAAGCAAATAATAGACAGATGGATGACATTAACAAGATGATACCTAATTTTGCTTCTGAATGACACCAAAACAGGTATGCTACCGCCCTGTATAA

mRNA sequence

ATGATGGGGACATCAGTCCTTAACCACAACCATCATTTATTGCCCTCTAAAGACATACAACAAAGTTTAGATTTGAGTTTGAAGCAGAAGGAGCAGGAATGTTTGTGCCTTCTAAAGAAATGCAAGAGCTTAGAAGAATTCAAACAAGTTCATGTTCAAATTCTGAAGTTGGGTCTTTTCTGGGATTCTTTCTGCTCAAGCAGTCTTTTGAGCACTTGTGCGCTCTCAGATTGGAGCAGCATGGACTATGCCTGCTCCATTTTCCAACAGCTAGATGAACCTACCACATTTCATTTCAACACAATGATCAAAGGCTATGTTAACAACATGAACTTTGAGAGTGCTCTAAATCTGTATGCCGATATGTTTCAAAGAGAAGTAGAACCCGACAACTTCACGTACCCGGTAGTTCTCAAGGCTTGTGCTCGGTTAGCAGCGATCGAGGAAGGGATGCAGATTCATGGTCATGTATTCAAGCTAGGTTTGGAAGATGATCTATTTGTACAGAATAGCTTAATCAATATGTATGGGAAATGTGGGGATATCGAACTGTCTTGTGCTGTTTTTCGACGTATGGAGGAAAAGAGTGTGGCTTCTTGGAGTGCTATAATTTCAGCTCATGCTCGTGTTGGATTGTGGCGGGAATGTTTGATGTTGTTTGAGGATATGAGTACAGAAGGATGTTGGAGGGCTGAGGAAAGTATATTAGTCAGTGTGGTATGCTACCGCCCTGTATAA

Coding sequence (CDS)

ATGATGGGGACATCAGTCCTTAACCACAACCATCATTTATTGCCCTCTAAAGACATACAACAAAGTTTAGATTTGAGTTTGAAGCAGAAGGAGCAGGAATGTTTGTGCCTTCTAAAGAAATGCAAGAGCTTAGAAGAATTCAAACAAGTTCATGTTCAAATTCTGAAGTTGGGTCTTTTCTGGGATTCTTTCTGCTCAAGCAGTCTTTTGAGCACTTGTGCGCTCTCAGATTGGAGCAGCATGGACTATGCCTGCTCCATTTTCCAACAGCTAGATGAACCTACCACATTTCATTTCAACACAATGATCAAAGGCTATGTTAACAACATGAACTTTGAGAGTGCTCTAAATCTGTATGCCGATATGTTTCAAAGAGAAGTAGAACCCGACAACTTCACGTACCCGGTAGTTCTCAAGGCTTGTGCTCGGTTAGCAGCGATCGAGGAAGGGATGCAGATTCATGGTCATGTATTCAAGCTAGGTTTGGAAGATGATCTATTTGTACAGAATAGCTTAATCAATATGTATGGGAAATGTGGGGATATCGAACTGTCTTGTGCTGTTTTTCGACGTATGGAGGAAAAGAGTGTGGCTTCTTGGAGTGCTATAATTTCAGCTCATGCTCGTGTTGGATTGTGGCGGGAATGTTTGATGTTGTTTGAGGATATGAGTACAGAAGGATGTTGGAGGGCTGAGGAAAGTATATTAGTCAGTGTGGTATGCTACCGCCCTGTATAA

Protein sequence

MMGTSVLNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLFWDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYADMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVVCYRPV
Homology
[Close]
BLAST of Cp4.1LG15g01850 vs. Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-69
Identity = 130/213 (61.03%), Postives = 167/213 (78.40%), Query Frame = 1 

Query: 30  KEQECLCLLKKCKSLEEFKQVHVQILKLGLFWDS-FCSSSLLSTCALSDW-SSMDYACSI 89
           KEQECL LLK+C +++EFKQVH + +KL LF+ S F +SS+L+ CA S W +SM+YA SI
Sbjct: 29  KEQECLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASI 88

Query: 90  FQQLDEPTTFHFNTMIKGYVNNMNFESALNLYADMFQREVEPDNFTYPVVLKACARLAAI 149
           F+ +D+P TF FNTMI+GYVN M+FE AL  Y +M QR  EPDNFTYP +LKAC RL +I
Sbjct: 89  FRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSI 148

Query: 150 EEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCAVFRRMEEKSVASWSAIISAH 209
            EG QIHG VFKLGLE D+FVQNSLINMYG+CG++ELS AVF ++E K+ ASWS+++SA 
Sbjct: 149 REGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSAR 208

Query: 210 ARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 241
           A +G+W ECL+LF  M +E   +AEES +VS +
Sbjct: 209 AGMGMWSECLLLFRGMCSETNLKAEESGMVSAL 241

[Close]
BLAST of Cp4.1LG15g01850 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-33
Identity = 85/238 (35.71%), Postives = 130/238 (54.62%), Query Frame = 1 

Query: 35  LCLLKKCKSLEEFKQVHVQILKLGLFWDSFCSSSLLSTCALSD-WSSMDYACSIFQQLDE 94
           L LL  CK+L+  + +H Q++K+GL   ++  S L+  C LS  +  + YA S+F+ + E
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96

Query: 95  PTTFHFNTMIKGYVNNMNFESALNLYADMFQREVEPDNFTYPVVLKACARLAAIEEGMQI 154
           P    +NTM +G+  + +  SAL LY  M    + P+++T+P VLK+CA+  A +EG QI
Sbjct: 97  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156

Query: 155 HGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCAVFRR---------------------- 214
           HGHV KLG + DL+V  SLI+MY + G +E +  VF +                      
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216

Query: 215 ---------MEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 241
                    +  K V SW+A+IS +A  G ++E L LF+DM      R +ES +V+VV
Sbjct: 217 ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVV 273

[Close]
BLAST of Cp4.1LG15g01850 vs. Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-31
Identity = 79/216 (36.57%), Postives = 121/216 (56.02%), Query Frame = 1 

Query: 21  QSLDLSLKQKEQ------------ECLCLLKKCKSLEEFKQVHVQILKLGLFWDSFCSSS 80
           Q+ +L L QKE               L   ++ KSL E +Q H  +LK GLF D+F +S 
Sbjct: 17  QAYNLRLLQKENLKKMSVCSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASK 76

Query: 81  LLSTCALS-DWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYADMFQREV 140
           L++  A + +  ++ YA SI  ++  P  F  N++I+ Y N+   E AL ++ +M    V
Sbjct: 77  LVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPV 136

Query: 141 EPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCA 200
            PD +++  VLKACA     EEG QIHG   K GL  D+FV+N+L+N+YG+ G  E++  
Sbjct: 137 FPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARK 196

Query: 201 VFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDM 224
           V  RM  +   SW++++SA+   GL  E   LF++M
Sbjct: 197 VLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEM 232

[Close]
BLAST of Cp4.1LG15g01850 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-31
Identity = 63/193 (32.64%), Postives = 119/193 (61.66%), Query Frame = 1 

Query: 35  LCLLKKCKSLEEFKQVHVQILKLGLFWDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEP 94
           + L+++C SL + KQ H  +++ G F D + +S L +  ALS ++S++YA  +F ++ +P
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 95  TTFHFNTMIKGYVNNMNFESALNLYADMF-QREVEPDNFTYPVVLKACARLAAIEEGMQI 154
            +F +NT+I+ Y +  +   ++  + DM  + +  P+ +T+P ++KA A ++++  G  +
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 155 HGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCAVFRRMEEKSVASWSAIISAHARVGLW 214
           HG   K  +  D+FV NSLI+ Y  CGD++ +C VF  ++EK V SW+++I+   + G  
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 215 RECLMLFEDMSTE 227
            + L LF+ M +E
Sbjct: 214 DKALELFKKMESE 226

[Close]
BLAST of Cp4.1LG15g01850 vs. Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 73/201 (36.32%), Postives = 118/201 (58.71%), Query Frame = 1 

Query: 46  EFKQVHVQILKLGLFWDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKG 105
           + KQ+H ++L LGL +  F  + L+   A S +  + +A  +F  L  P  F +N +I+G
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQIFPWNAIIRG 95

Query: 106 YVNNMNFESALNLYADMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDD 165
           Y  N +F+ AL +Y++M    V PD+FT+P +LKAC+ L+ ++ G  +H  VF+LG + D
Sbjct: 96  YSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 155

Query: 166 LFVQNSLINMYGKCGDIELSCAVFR--RMEEKSVASWSAIISAHARVGLWRECLMLFED- 225
           +FVQN LI +Y KC  +  +  VF    + E+++ SW+AI+SA+A+ G   E L +F   
Sbjct: 156 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 215

Query: 226 --MSTEGCWRAEESILVSVVC 242
             M  +  W A  S+L +  C
Sbjct: 216 RKMDVKPDWVALVSVLNAFTC 234

[Close]
BLAST of Cp4.1LG15g01850 vs. TrEMBL
Match: A0A0A0LE81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895910 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 1.1e-113
Identity = 202/241 (83.82%), Postives = 224/241 (92.95%), Query Frame = 1 

Query: 1   MMGTSVLNHNHHLLPSKDI-QQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGL 60
           MMGTSVLN+NHHLLPSKD+ Q S +L+LKQKEQE LCL+KKCKSLEEFKQVHVQILK GL
Sbjct: 1   MMGTSVLNYNHHLLPSKDLPQSSSELNLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGL 60

Query: 61  FWDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLY 120
           F DSFCSSS+L+TCALSDW+SMDYACSIFQQLDEPTTF FNTMI+GYVNNMNFE+A+ LY
Sbjct: 61  FLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLY 120

Query: 121 ADMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKC 180
            DM QREVEPDNFTYPVVLKACARLA I+EGMQIHGHVFKLGLEDD++VQNSLINMYGKC
Sbjct: 121 NDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKC 180

Query: 181 GDIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSV 240
            DIE+SCA+FRRME+KSVASWSAII+AHA + +W ECL LFEDMS EGCWRAEESILV+V
Sbjct: 181 RDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNV 240

[Close]
BLAST of Cp4.1LG15g01850 vs. TrEMBL
Match: W9SFP7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022794 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.7e-90
Identity = 165/240 (68.75%), Postives = 197/240 (82.08%), Query Frame = 1 

Query: 1   MMGTSVLNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLF 60
           M GTSVLN  H LLP+K+  QS +  L  KEQECL LLK+CKS+ E KQ+HVQILK+GL 
Sbjct: 1   MTGTSVLNQTHLLLPAKEPIQSPEFHLSLKEQECLSLLKRCKSVRELKQIHVQILKIGLL 60

Query: 61  WDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYA 120
            DSFC+ +L++TCALSDW SMDYACSIF+ + EP TF FNTM++G+V + N+  AL LY 
Sbjct: 61  GDSFCAGNLVATCALSDWGSMDYACSIFRHVKEPQTFLFNTMMRGHVKDGNWGQALILYF 120

Query: 121 DMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCG 180
           DM +  VEPDNFTYPV+LKACARL+A EEGMQIHGH  KLGL+ DLFVQNSLINMYGKCG
Sbjct: 121 DMLKSGVEPDNFTYPVLLKACARLSATEEGMQIHGHTSKLGLQGDLFVQNSLINMYGKCG 180

Query: 181 DIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 240
            IEL+CAVF +M++KSVASW AII+AHA +G+W ECL+LF DM+ EGCWRAEES LVSV+
Sbjct: 181 KIELACAVFDQMDQKSVASWGAIIAAHASLGMWWECLVLFGDMNREGCWRAEESTLVSVL 240

[Close]
BLAST of Cp4.1LG15g01850 vs. TrEMBL
Match: A0A075M181_CAMSI (Tetratricopeptide repeat-like superfamily protein OS=Camellia sinensis var. sinensis PE=2 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 5.1e-87
Identity = 150/234 (64.10%), Postives = 193/234 (82.48%), Query Frame = 1 

Query: 7   LNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLFWDSFCS 66
           ++  H L+P +D  QS + + + +EQEC+ L+K+CK+LEEFKQ H QILK G+FW SFC+
Sbjct: 7   VHQTHFLIPQEDRPQSPESNFRLREQECVSLIKQCKNLEEFKQAHAQILKFGMFWSSFCA 66

Query: 67  SSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYADMFQRE 126
           ++L++TCALSDW SMDYA SIFQQ++EP +F FN MI+G+V +MN E AL +Y +M +  
Sbjct: 67  NNLVATCALSDWGSMDYASSIFQQINEPGSFAFNHMIRGHVKDMNLEEALLMYDEMLELG 126

Query: 127 VEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCGDIELSC 186
           VEPDNFTYP +LKACA L A+EEGMQIHGH FKLG EDD+FVQNSLINMYGKCG+I LSC
Sbjct: 127 VEPDNFTYPTLLKACANLPALEEGMQIHGHSFKLGFEDDVFVQNSLINMYGKCGEIGLSC 186

Query: 187 AVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 241
           AVF +ME+++VASWSA+I+AHA +GLW ECL +F +MS EGCWR EES+LV+V+
Sbjct: 187 AVFEKMEQRTVASWSALIAAHANLGLWCECLEIFGEMSREGCWRVEESVLVNVL 240

[Close]
BLAST of Cp4.1LG15g01850 vs. TrEMBL
Match: A0A061G7X6_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_016613 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.5e-86
Identity = 156/240 (65.00%), Postives = 189/240 (78.75%), Query Frame = 1 

Query: 1   MMGTSVLNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLF 60
           M GTSVL          D  QSL+LSL+ KEQEC  +LK+CK++EEF+Q H QI+K G F
Sbjct: 99  MPGTSVLQQTKFFSLPADPPQSLELSLRLKEQECFSILKRCKNMEEFRQAHAQIVKWGFF 158

Query: 61  WDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYA 120
           W+SFC+S+L++ CALSD  SMDYACSIFQQ+DEP TF FNTMI+ +V +M FE AL  Y 
Sbjct: 159 WNSFCASNLVAACALSDGGSMDYACSIFQQIDEPGTFEFNTMIRAHVKDMTFEEALVFYY 218

Query: 121 DMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCG 180
           +M ++ VEPDNFTYP + KACA L A EEG QIHGH FKLGLE DL+VQNSLINMYGKCG
Sbjct: 219 EMLEKGVEPDNFTYPALFKACACLQAQEEGKQIHGHAFKLGLESDLYVQNSLINMYGKCG 278

Query: 181 DIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 240
           +IE SCA+F +M++KSVASWSAII+AHA  G W ECLM+F +MS+EGCWR EES LV+V+
Sbjct: 279 EIEHSCAIFEQMDQKSVASWSAIIAAHASFGKWYECLMMFGNMSSEGCWRPEESTLVTVL 338

[Close]
BLAST of Cp4.1LG15g01850 vs. TrEMBL
Match: A0A0D2PE14_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G181600 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.9e-86
Identity = 154/240 (64.17%), Postives = 191/240 (79.58%), Query Frame = 1 

Query: 1   MMGTSVLNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLF 60
           M GTSVL   +   P  D  Q  +L+L+ KEQ+CL LLK+CK+LE+FKQ H QI+K G F
Sbjct: 1   MAGTSVLQQTNFFSPPADPPQFSELNLRLKEQQCLSLLKRCKNLEDFKQAHAQIIKWGFF 60

Query: 61  WDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYA 120
           W+SF +S+L++ CALSDW S+DYACSIFQQ  EP TF FNTMI+ +V +MNF+ AL  Y 
Sbjct: 61  WNSFSASNLVAACALSDWGSLDYACSIFQQFHEPGTFEFNTMIRAHVKDMNFQDALVFYY 120

Query: 121 DMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCG 180
           +M +R VEPDNFTYP + KACA L A EEGMQIHGHVFK G E DL+VQNSLINMYGKCG
Sbjct: 121 EMLERGVEPDNFTYPALFKACAWLKAREEGMQIHGHVFKFGFESDLYVQNSLINMYGKCG 180

Query: 181 DIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 240
           +I+ SCAVF +M+EKSVASWSAII+A+A +G+W ECLM+F +MS+EGCWR EES LV+++
Sbjct: 181 EIQHSCAVFEQMDEKSVASWSAIIAANASLGMWYECLMVFGNMSSEGCWRPEESTLVTLL 240

[Close]
BLAST of Cp4.1LG15g01850 vs. TAIR10
Match: AT1G31920.1 (AT1G31920.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 263.8 bits (673), Expect = 1.0e-70
Identity = 130/213 (61.03%), Postives = 167/213 (78.40%), Query Frame = 1 

Query: 30  KEQECLCLLKKCKSLEEFKQVHVQILKLGLFWDS-FCSSSLLSTCALSDW-SSMDYACSI 89
           KEQECL LLK+C +++EFKQVH + +KL LF+ S F +SS+L+ CA S W +SM+YA SI
Sbjct: 29  KEQECLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASI 88

Query: 90  FQQLDEPTTFHFNTMIKGYVNNMNFESALNLYADMFQREVEPDNFTYPVVLKACARLAAI 149
           F+ +D+P TF FNTMI+GYVN M+FE AL  Y +M QR  EPDNFTYP +LKAC RL +I
Sbjct: 89  FRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSI 148

Query: 150 EEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCAVFRRMEEKSVASWSAIISAH 209
            EG QIHG VFKLGLE D+FVQNSLINMYG+CG++ELS AVF ++E K+ ASWS+++SA 
Sbjct: 149 REGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSAR 208

Query: 210 ARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 241
           A +G+W ECL+LF  M +E   +AEES +VS +
Sbjct: 209 AGMGMWSECLLLFRGMCSETNLKAEESGMVSAL 241

[Close]
BLAST of Cp4.1LG15g01850 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-34
Identity = 85/238 (35.71%), Postives = 130/238 (54.62%), Query Frame = 1 

Query: 35  LCLLKKCKSLEEFKQVHVQILKLGLFWDSFCSSSLLSTCALSD-WSSMDYACSIFQQLDE 94
           L LL  CK+L+  + +H Q++K+GL   ++  S L+  C LS  +  + YA S+F+ + E
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96

Query: 95  PTTFHFNTMIKGYVNNMNFESALNLYADMFQREVEPDNFTYPVVLKACARLAAIEEGMQI 154
           P    +NTM +G+  + +  SAL LY  M    + P+++T+P VLK+CA+  A +EG QI
Sbjct: 97  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156

Query: 155 HGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCAVFRR---------------------- 214
           HGHV KLG + DL+V  SLI+MY + G +E +  VF +                      
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216

Query: 215 ---------MEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 241
                    +  K V SW+A+IS +A  G ++E L LF+DM      R +ES +V+VV
Sbjct: 217 ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVV 273

[Close]
BLAST of Cp4.1LG15g01850 vs. TAIR10
Match: AT4G18840.1 (AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-32
Identity = 79/216 (36.57%), Postives = 121/216 (56.02%), Query Frame = 1 

Query: 21  QSLDLSLKQKEQ------------ECLCLLKKCKSLEEFKQVHVQILKLGLFWDSFCSSS 80
           Q+ +L L QKE               L   ++ KSL E +Q H  +LK GLF D+F +S 
Sbjct: 17  QAYNLRLLQKENLKKMSVCSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASK 76

Query: 81  LLSTCALS-DWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYADMFQREV 140
           L++  A + +  ++ YA SI  ++  P  F  N++I+ Y N+   E AL ++ +M    V
Sbjct: 77  LVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPV 136

Query: 141 EPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCA 200
            PD +++  VLKACA     EEG QIHG   K GL  D+FV+N+L+N+YG+ G  E++  
Sbjct: 137 FPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARK 196

Query: 201 VFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDM 224
           V  RM  +   SW++++SA+   GL  E   LF++M
Sbjct: 197 VLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEM 232

[Close]
BLAST of Cp4.1LG15g01850 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 4.2e-32
Identity = 63/193 (32.64%), Postives = 119/193 (61.66%), Query Frame = 1 

Query: 35  LCLLKKCKSLEEFKQVHVQILKLGLFWDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEP 94
           + L+++C SL + KQ H  +++ G F D + +S L +  ALS ++S++YA  +F ++ +P
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 95  TTFHFNTMIKGYVNNMNFESALNLYADMF-QREVEPDNFTYPVVLKACARLAAIEEGMQI 154
            +F +NT+I+ Y +  +   ++  + DM  + +  P+ +T+P ++KA A ++++  G  +
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 155 HGHVFKLGLEDDLFVQNSLINMYGKCGDIELSCAVFRRMEEKSVASWSAIISAHARVGLW 214
           HG   K  +  D+FV NSLI+ Y  CGD++ +C VF  ++EK V SW+++I+   + G  
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 215 RECLMLFEDMSTE 227
            + L LF+ M +E
Sbjct: 214 DKALELFKKMESE 226

[Close]
BLAST of Cp4.1LG15g01850 vs. TAIR10
Match: AT3G12770.1 (AT3G12770.1 mitochondrial editing factor 22)

HSP 1 Score: 134.8 bits (338), Expect = 7.1e-32
Identity = 73/201 (36.32%), Postives = 118/201 (58.71%), Query Frame = 1 

Query: 46  EFKQVHVQILKLGLFWDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKG 105
           + KQ+H ++L LGL +  F  + L+   A S +  + +A  +F  L  P  F +N +I+G
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQIFPWNAIIRG 95

Query: 106 YVNNMNFESALNLYADMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDD 165
           Y  N +F+ AL +Y++M    V PD+FT+P +LKAC+ L+ ++ G  +H  VF+LG + D
Sbjct: 96  YSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 155

Query: 166 LFVQNSLINMYGKCGDIELSCAVFR--RMEEKSVASWSAIISAHARVGLWRECLMLFED- 225
           +FVQN LI +Y KC  +  +  VF    + E+++ SW+AI+SA+A+ G   E L +F   
Sbjct: 156 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 215

Query: 226 --MSTEGCWRAEESILVSVVC 242
             M  +  W A  S+L +  C
Sbjct: 216 RKMDVKPDWVALVSVLNAFTC 234

[Close]
BLAST of Cp4.1LG15g01850 vs. NCBI nr
Match: gi|659132121|ref|XP_008466029.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g31920 [Cucumis melo])

HSP 1 Score: 419.9 bits (1078), Expect = 3.2e-114
Identity = 203/240 (84.58%), Postives = 224/240 (93.33%), Query Frame = 1 

Query: 1   MMGTSVLNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLF 60
           MMGTSVLN+NHHLLPSKD+ QS +L+LKQKEQE L LLKKCKSLEEFKQVHVQILK GLF
Sbjct: 1   MMGTSVLNYNHHLLPSKDLPQSSELNLKQKEQEFLRLLKKCKSLEEFKQVHVQILKFGLF 60

Query: 61  WDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYA 120
            DSFCSSS+L+TCALSDW+SMDYACSIFQQLDEPTTF FNTMI+GYVNNMNFE+A+ LY 
Sbjct: 61  LDSFCSSSILATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYN 120

Query: 121 DMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCG 180
           DM QREVEPDNFTYPVVLKACARLAAI+EGMQIHGHVFKLGLEDD+FVQNSLINMYGKC 
Sbjct: 121 DMLQREVEPDNFTYPVVLKACARLAAIQEGMQIHGHVFKLGLEDDVFVQNSLINMYGKCR 180

Query: 181 DIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 240
           DI++SCA+FRRME+KSVASWSAII+AHA + +W ECL LFEDMS EGCWRAEESILV+V+
Sbjct: 181 DIKMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVL 240

[Close]
BLAST of Cp4.1LG15g01850 vs. NCBI nr
Match: gi|778687802|ref|XP_011652628.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g31920 [Cucumis sativus])

HSP 1 Score: 417.5 bits (1072), Expect = 1.6e-113
Identity = 202/241 (83.82%), Postives = 224/241 (92.95%), Query Frame = 1 

Query: 1   MMGTSVLNHNHHLLPSKDI-QQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGL 60
           MMGTSVLN+NHHLLPSKD+ Q S +L+LKQKEQE LCL+KKCKSLEEFKQVHVQILK GL
Sbjct: 1   MMGTSVLNYNHHLLPSKDLPQSSSELNLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGL 60

Query: 61  FWDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLY 120
           F DSFCSSS+L+TCALSDW+SMDYACSIFQQLDEPTTF FNTMI+GYVNNMNFE+A+ LY
Sbjct: 61  FLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLY 120

Query: 121 ADMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKC 180
            DM QREVEPDNFTYPVVLKACARLA I+EGMQIHGHVFKLGLEDD++VQNSLINMYGKC
Sbjct: 121 NDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKC 180

Query: 181 GDIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSV 240
            DIE+SCA+FRRME+KSVASWSAII+AHA + +W ECL LFEDMS EGCWRAEESILV+V
Sbjct: 181 RDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNV 240

[Close]
BLAST of Cp4.1LG15g01850 vs. NCBI nr
Match: gi|1009158478|ref|XP_015897312.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Ziziphus jujuba])

HSP 1 Score: 342.0 bits (876), Expect = 8.4e-91
Identity = 158/240 (65.83%), Postives = 199/240 (82.92%), Query Frame = 1 

Query: 1   MMGTSVLNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLF 60
           M+GT+VLN  H LLP+KD  Q+ + +L  KEQECL LLK+CKS+EEFK+VHV  +K GLF
Sbjct: 11  MIGTTVLNQTHLLLPTKDPPQNPEFNLSLKEQECLSLLKRCKSIEEFKRVHVHFIKFGLF 70

Query: 61  WDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYA 120
           W SFC+ +L++TCALSDW S+DYACSIFQQ+DEP TF +NTMI+G+V  MN+  AL LY 
Sbjct: 71  WGSFCAGNLVATCALSDWGSLDYACSIFQQIDEPDTFLYNTMIRGHVKGMNWGQALLLYH 130

Query: 121 DMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCG 180
           +M +R VEPDNFTYP +LKAC+ L  +E+G QIHGH+FKLGL+DD+FVQNSLINMYGKC 
Sbjct: 131 EMLERGVEPDNFTYPALLKACSLLRFLEDGKQIHGHIFKLGLQDDVFVQNSLINMYGKCK 190

Query: 181 DIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 240
           + +LSCAVF +M +K++ASWSAII+AHA +G+W ECL+LF DM +EG WR EESILVSV+
Sbjct: 191 ETDLSCAVFEQMNQKTIASWSAIIAAHASLGMWSECLILFGDMRSEGYWRPEESILVSVL 250

[Close]
BLAST of Cp4.1LG15g01850 vs. NCBI nr
Match: gi|1009174393|ref|XP_015868324.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Ziziphus jujuba])

HSP 1 Score: 341.7 bits (875), Expect = 1.1e-90
Identity = 158/240 (65.83%), Postives = 198/240 (82.50%), Query Frame = 1 

Query: 1   MMGTSVLNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLF 60
           M+GT+VLN  H LLP+KD  Q+ + +L  KEQECL LLK+CKS+EEFK+VHV  +K GLF
Sbjct: 11  MIGTTVLNQTHLLLPTKDPPQNPEFNLSLKEQECLSLLKRCKSIEEFKRVHVHFIKFGLF 70

Query: 61  WDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYA 120
           W SFC  +L++TCALSDW S+DYACSIFQQ+DEP TF +NTMI+G+V  MN+  AL LY 
Sbjct: 71  WGSFCEGNLVATCALSDWGSLDYACSIFQQIDEPDTFLYNTMIRGHVKGMNWGQALLLYH 130

Query: 121 DMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCG 180
           +M +R VEPDNFTYP +LKAC+ L  +E+G QIHGH+FKLGL+DD+FVQNSLINMYGKC 
Sbjct: 131 EMLERGVEPDNFTYPALLKACSLLRFLEDGKQIHGHIFKLGLQDDVFVQNSLINMYGKCK 190

Query: 181 DIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 240
           + +LSCAVF +M +K++ASWSAII+AHA +G+W ECL+LF DM +EG WR EESILVSV+
Sbjct: 191 ETDLSCAVFEQMNQKTIASWSAIIAAHASLGMWSECLILFGDMRSEGFWRPEESILVSVL 250

[Close]
BLAST of Cp4.1LG15g01850 vs. NCBI nr
Match: gi|703152375|ref|XP_010110391.1| (hypothetical protein L484_022794 [Morus notabilis])

HSP 1 Score: 340.5 bits (872), Expect = 2.4e-90
Identity = 165/240 (68.75%), Postives = 197/240 (82.08%), Query Frame = 1 

Query: 1   MMGTSVLNHNHHLLPSKDIQQSLDLSLKQKEQECLCLLKKCKSLEEFKQVHVQILKLGLF 60
           M GTSVLN  H LLP+K+  QS +  L  KEQECL LLK+CKS+ E KQ+HVQILK+GL 
Sbjct: 1   MTGTSVLNQTHLLLPAKEPIQSPEFHLSLKEQECLSLLKRCKSVRELKQIHVQILKIGLL 60

Query: 61  WDSFCSSSLLSTCALSDWSSMDYACSIFQQLDEPTTFHFNTMIKGYVNNMNFESALNLYA 120
            DSFC+ +L++TCALSDW SMDYACSIF+ + EP TF FNTM++G+V + N+  AL LY 
Sbjct: 61  GDSFCAGNLVATCALSDWGSMDYACSIFRHVKEPQTFLFNTMMRGHVKDGNWGQALILYF 120

Query: 121 DMFQREVEPDNFTYPVVLKACARLAAIEEGMQIHGHVFKLGLEDDLFVQNSLINMYGKCG 180
           DM +  VEPDNFTYPV+LKACARL+A EEGMQIHGH  KLGL+ DLFVQNSLINMYGKCG
Sbjct: 121 DMLKSGVEPDNFTYPVLLKACARLSATEEGMQIHGHTSKLGLQGDLFVQNSLINMYGKCG 180

Query: 181 DIELSCAVFRRMEEKSVASWSAIISAHARVGLWRECLMLFEDMSTEGCWRAEESILVSVV 240
            IEL+CAVF +M++KSVASW AII+AHA +G+W ECL+LF DM+ EGCWRAEES LVSV+
Sbjct: 181 KIELACAVFDQMDQKSVASWGAIIAAHASLGMWWECLVLFGDMNREGCWRAEESTLVSVL 240

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g01850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR68_ARATH1.8e-6961.03Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN... [more]
PPR21_ARATH4.7e-3335.71Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
PP321_ARATH2.0e-3136.57Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN... [more]
PP175_ARATH7.4e-3132.64Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
PP224_ARATH1.3e-3036.32Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG15g01850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LE81_CUCSA1.1e-11383.82Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895910 PE=4 SV=1[more]
W9SFP7_9ROSA1.7e-9068.75Uncharacterized protein OS=Morus notabilis GN=L484_022794 PE=4 SV=1[more]
A0A075M181_CAMSI5.1e-8764.10Tetratricopeptide repeat-like superfamily protein OS=Camellia sinensis var. sine... [more]
A0A061G7X6_THECC1.5e-8665.00Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_0166... [more]
A0A0D2PE14_GOSRA1.9e-8664.17Uncharacterized protein OS=Gossypium raimondii GN=B456_004G181600 PE=4 SV=1[more]
BLAST of Cp4.1LG15g01850 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31920.11.0e-7061.03 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G08070.12.6e-3435.71 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G18840.11.1e-3236.57 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT2G29760.14.2e-3232.64 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G12770.17.1e-3236.32 mitochondrial editing factor 22[more]
BLAST of Cp4.1LG15g01850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659132121|ref|XP_008466029.1|3.2e-11484.58PREDICTED: pentatricopeptide repeat-containing protein At1g31920 [Cucumis melo][more]
gi|778687802|ref|XP_011652628.1|1.6e-11383.82PREDICTED: pentatricopeptide repeat-containing protein At1g31920 [Cucumis sativu... [more]
gi|1009158478|ref|XP_015897312.1|8.4e-9165.83PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Ziziphus ... [more]
gi|1009174393|ref|XP_015868324.1|1.1e-9065.83PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Ziziphus ... [more]
gi|703152375|ref|XP_010110391.1|2.4e-9068.75hypothetical protein L484_022794 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016556 mRNA modification
biological_process GO:0010075 regulation of meristem growth
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g01850.1Cp4.1LG15g01850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 170..196
score: 8.1E-5coord: 199..228
score: 1.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 94..143
score: 7.6
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 99..130
score: 9.6E-7coord: 168..197
score: 2.4E-5coord: 199..228
score: 5.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 95..129
score: 10.358coord: 165..199
score: 9.887coord: 130..164
score: 7.815coord: 200..230
score: 6
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 23..240
score: 4.2E
NoneNo IPR availablePANTHERPTHR24015:SF552SUBFAMILY NOT NAMEDcoord: 23..240
score: 4.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g01850Cucsa.312760Cucumber (Gy14) v1cgycpeB0817
Cp4.1LG15g01850CmaCh19G002100Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g01850CmoCh19G002260Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g01850Cla016252Watermelon (97103) v1cpewmB235
Cp4.1LG15g01850Csa3G895910Cucumber (Chinese Long) v2cpecuB239
Cp4.1LG15g01850ClCG09G011550Watermelon (Charleston Gray)cpewcgB216
Cp4.1LG15g01850CSPI03G46330Wild cucumber (PI 183967)cpecpiB243
Cp4.1LG15g01850LsiUNG000040Bottle gourd (USVL1VR-Ls)cpelsiB190
Cp4.1LG15g01850Bhi05G000286Wax gourdcpewgoB0319
Cp4.1LG15g01850CsGy3G043790Cucumber (Gy14) v2cgybcpeB332
Cp4.1LG15g01850Carg25331Silver-seed gourdcarcpeB0114
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g01850Cucumber (Chinese Long) v3cpecucB0298
Cp4.1LG15g01850Cucumber (Chinese Long) v3cpecucB0300
Cp4.1LG15g01850Cucurbita pepo (Zucchini)cpecpeB231
Cp4.1LG15g01850Cucurbita pepo (Zucchini)cpecpeB273
Cp4.1LG15g01850Cucumber (Gy14) v1cgycpeB0848
Cp4.1LG15g01850Cucurbita maxima (Rimu)cmacpeB349
Cp4.1LG15g01850Cucurbita maxima (Rimu)cmacpeB615
Cp4.1LG15g01850Cucurbita moschata (Rifu)cmocpeB310
Cp4.1LG15g01850Cucurbita moschata (Rifu)cmocpeB564
Cp4.1LG15g01850Wild cucumber (PI 183967)cpecpiB245
Cp4.1LG15g01850Cucumber (Chinese Long) v2cpecuB241
Cp4.1LG15g01850Bottle gourd (USVL1VR-Ls)cpelsiB218
Cp4.1LG15g01850Watermelon (Charleston Gray)cpewcgB227
Cp4.1LG15g01850Watermelon (97103) v1cpewmB249
Cp4.1LG15g01850Melon (DHL92) v3.5.1cpemeB240
Cp4.1LG15g01850Cucumber (Gy14) v2cgybcpeB334
Cp4.1LG15g01850Melon (DHL92) v3.6.1cpemedB271
Cp4.1LG15g01850Melon (DHL92) v3.6.1cpemedB281
Cp4.1LG15g01850Silver-seed gourdcarcpeB1094