Cp4.1LG15g01810 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG15g01810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor-like protein
LocationCp4.1LG15 : 1440334 .. 1440989 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTCATGATCCTTCTCTATTGCCCGTGGGAGTGAGATTCAGGCCTACCGATCCACAACTTCTTCAGTACTTGCATTGGAAGATTCATGGGCAACCATATTTCAAACGTGCAGTCTTAGACTGTGATCTTTATGGAGAAATGGAGCCATGGGAAATCTGGCTACGGTTCGGAGGCATGGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCAACCAATAACTCTGGACGTTTGTCGGCGCATATCAACCGCAAGGTTGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCGGCCAATCCAATTTTTGCTACAAAAACCGATAAAACAATAATCGGTTATTGCAAACGCTTTAGGTTCGTTCTGTCATTTTGATTTCAATTTTTGTTAGAATCTTTAACCTTATGTTTGTGTCCTTGGAACATTTAAGTCATTGAATACATTTTAGGTACGAGAATGTCCAGTTGCCCGAGCATCATGGGGAATGGATTATGCATGAATATAGCTTGTATCAAGATTCGATACAACAAGCGGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAACGAAAGACTTAAAAGAAAATTACAAAAAAATCTCGAGGAGGAGCAACTTAGCAAGAGAAGAATGACCACCTGA

mRNA sequence

ATGGTGAGATTCAGGCCTACCGATCCACAACTTCTTCAGTACTTGCATTGGAAGATTCATGGGCAACCATATTTCAAACGTGCAGTCTTAGACTGTGATCTTTATGGAGAAATGGAGCCATGGGAAATCTGGCTACGGTTCGGAGGCATGGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCAACCAATAACTCTGGACGTTTGTCGGCGCATATCAACCGCAAGGTTGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCGGCCAATCCAATTTTTGCTACAAAAACCGATAAAACAATAATCGGTTATTGCAAACGCTTTAGGTACGAGAATGTCCAGTTGCCCGAGCATCATGGGGAATGGATTATGCATGAATATAGCTTGTATCAAGATTCGATACAACAAGCGGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAACGAAAGACTTAAAAGAAAATTACAAAAAAATCTCGAGGAGGAGCAACTTAGCAAGAGAAGAATGACCACCTGA

Coding sequence (CDS)

ATGGTGAGATTCAGGCCTACCGATCCACAACTTCTTCAGTACTTGCATTGGAAGATTCATGGGCAACCATATTTCAAACGTGCAGTCTTAGACTGTGATCTTTATGGAGAAATGGAGCCATGGGAAATCTGGCTACGGTTCGGAGGCATGGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCAACCAATAACTCTGGACGTTTGTCGGCGCATATCAACCGCAAGGTTGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCGGCCAATCCAATTTTTGCTACAAAAACCGATAAAACAATAATCGGTTATTGCAAACGCTTTAGGTACGAGAATGTCCAGTTGCCCGAGCATCATGGGGAATGGATTATGCATGAATATAGCTTGTATCAAGATTCGATACAACAAGCGGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAACGAAAGACTTAAAAGAAAATTACAAAAAAATCTCGAGGAGGAGCAACTTAGCAAGAGAAGAATGACCACCTGA

Protein sequence

MVRFRPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGMDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEHHGEWIMHEYSLYQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEEEQLSKRRMTT
BLAST of Cp4.1LG15g01810 vs. TrEMBL
Match: A0A0A0KXM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.6e-64
Identity = 120/174 (68.97%), Postives = 140/174 (80.46%), Query Frame = 1

Query: 2   VRFRPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGMDGEDLYFFTKL 61
           V+FRPTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGG+DGEDLYFFTKL
Sbjct: 18  VKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFTKL 77

Query: 62  KRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEH 121
           KRST NSG LS HINRK+GL NGTWSGENSA+PI+  K  + IIGY KRFRYEN  L EH
Sbjct: 78  KRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQIIGYRKRFRYENESLEEH 137

Query: 122 HGEWIMHEYSLYQDSIQ-QAVDSDYVLCRFKKNERLKRKLQKNLEEEQLSKRRM 175
           HGEWIMHEYSL+ D ++ + VD +YVLCR +KN+R KRKL+   E +Q +K+RM
Sbjct: 138 HGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRAKRKLETESELKQSNKKRM 191

BLAST of Cp4.1LG15g01810 vs. TrEMBL
Match: A0A0A0LFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-62
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = 1

Query: 2   VRFRPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGMDGEDLYFFTKL 61
           V+FRPTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGG+DGEDLYFFTKL
Sbjct: 18  VKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFTKL 77

Query: 62  KRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEH 121
           KRST NSG LS HINRK+GL NGTWSGENSA+PI+  + D+ IIGY KRFRYEN    EH
Sbjct: 78  KRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQIIGYRKRFRYENESSEEH 137

Query: 122 HGEWIMHEYSLYQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEEEQLSKRRM 175
           HGEWIMHEY+L+ + + + VD +YVLCR ++NER +RKL+   E +Q +K+R+
Sbjct: 138 HGEWIMHEYNLHPNYLCEGVDPNYVLCRIRRNERARRKLEIQGELKQPNKKRI 190

BLAST of Cp4.1LG15g01810 vs. TrEMBL
Match: A0A0A0M0I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.5e-61
Identity = 116/175 (66.29%), Postives = 141/175 (80.57%), Query Frame = 1

Query: 2   VRFRPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGMDGEDLYFFTKL 61
           ++FRPTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGG+DGEDLYFFTKL
Sbjct: 48  LKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFTKL 107

Query: 62  KRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEH 121
           KRST N G LS H+NRK+GL NGTWSGENSA+PI+  +  + IIGY KRFRYEN  L EH
Sbjct: 108 KRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGYRKRFRYENESLEEH 167

Query: 122 HGEWIMHEYSLYQDSIQ-QAVDSDYVLCRFKKNERLKRK-LQKNLEEEQLSKRRM 175
           HGEWIMHEYS++Q  ++ + VDS+YVLCR +KNER+KRK L+   E +Q +K+R+
Sbjct: 168 HGEWIMHEYSMHQRYLRCEGVDSNYVLCRMRKNERVKRKLLEIQGEAKQPNKKRI 222

BLAST of Cp4.1LG15g01810 vs. TrEMBL
Match: A0A061FR05_THECC (Transcription factor-like protein OS=Theobroma cacao GN=TCM_044639 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-26
Identity = 73/165 (44.24%), Postives = 99/165 (60.00%), Query Frame = 1

Query: 4   FRPTDPQLLQYLHWKIHGQPYF---KRAVLDCDLYGEMEPWEIWLRFGGMD---GEDLYF 63
           F P+D  L+ YL  K+  +      +  + D DLYGE EPWEIW   GG +    EDLYF
Sbjct: 7   FEPSDRSLMCYLFSKVTSKSMLHLDQVQIKDFDLYGEKEPWEIWDLHGGFNLQSDEDLYF 66

Query: 64  FTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQ 123
           FTKLK+ + N  R    INR VG   GTW GE+S  PI++  +    +G+ +RFRYE   
Sbjct: 67  FTKLKKKSQNGSR----INRSVG--TGTWMGEDSGKPIYSRLSAIQPLGFKRRFRYEG-G 126

Query: 124 LPEHHGEWIMHEYSLYQDSIQQAVDSDYVLCRFKKNERLKRKLQK 163
           +P+  G+WIMHEYSL    + +  D  YVLCR +KN+R ++K +K
Sbjct: 127 VPQQVGQWIMHEYSLNTTLVPEN-DQGYVLCRVRKNDREEKKAEK 163

BLAST of Cp4.1LG15g01810 vs. TrEMBL
Match: A0A061FS95_THECC (Transcription factor-like protein OS=Theobroma cacao GN=TCM_044667 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-26
Identity = 73/165 (44.24%), Postives = 99/165 (60.00%), Query Frame = 1

Query: 4   FRPTDPQLLQYLHWKIHGQP---YFKRAVLDCDLYGEMEPWEIWLRFGGMD---GEDLYF 63
           F P+D  L+ YL  K+  +    + +  + D DLYGE EPWEIW  +GG +   GEDLYF
Sbjct: 7   FGPSDRSLMCYLFSKVTSKSMLHFDQDQIKDFDLYGEKEPWEIWDLYGGCNRQSGEDLYF 66

Query: 64  FTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQ 123
           FTKLK+ + N  R    INR VG+  GTW GE+S  PI++  +    + + KR RYE   
Sbjct: 67  FTKLKKKSQNGSR----INRSVGM--GTWMGEDSGKPIYSQLSAIQPLVFKKRLRYEG-G 126

Query: 124 LPEHHGEWIMHEYSLYQDSIQQAVDSDYVLCRFKKNERLKRKLQK 163
           +P   G+WIMHEYSL    +    D  YVLCR +KN+R ++K +K
Sbjct: 127 VPHQVGQWIMHEYSL-NTVLVPGNDQGYVLCRLRKNDRDEKKAEK 163

BLAST of Cp4.1LG15g01810 vs. NCBI nr
Match: gi|449448878|ref|XP_004142192.1| (PREDICTED: NAC transcription factor 29-like [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.7e-64
Identity = 120/174 (68.97%), Postives = 140/174 (80.46%), Query Frame = 1

Query: 2   VRFRPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGMDGEDLYFFTKL 61
           V+FRPTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGG+DGEDLYFFTKL
Sbjct: 18  VKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFTKL 77

Query: 62  KRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEH 121
           KRST NSG LS HINRK+GL NGTWSGENSA+PI+  K  + IIGY KRFRYEN  L EH
Sbjct: 78  KRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQIIGYRKRFRYENESLEEH 137

Query: 122 HGEWIMHEYSLYQDSIQ-QAVDSDYVLCRFKKNERLKRKLQKNLEEEQLSKRRM 175
           HGEWIMHEYSL+ D ++ + VD +YVLCR +KN+R KRKL+   E +Q +K+RM
Sbjct: 138 HGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRAKRKLETESELKQSNKKRM 191

BLAST of Cp4.1LG15g01810 vs. NCBI nr
Match: gi|778688961|ref|XP_011652873.1| (PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 2.0e-62
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = 1

Query: 2   VRFRPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGMDGEDLYFFTKL 61
           V+FRPTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGG+DGEDLYFFTKL
Sbjct: 18  VKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFTKL 77

Query: 62  KRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEH 121
           KRST NSG LS HINRK+GL NGTWSGENSA+PI+  + D+ IIGY KRFRYEN    EH
Sbjct: 78  KRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQIIGYRKRFRYENESSEEH 137

Query: 122 HGEWIMHEYSLYQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEEEQLSKRRM 175
           HGEWIMHEY+L+ + + + VD +YVLCR ++NER +RKL+   E +Q +K+R+
Sbjct: 138 HGEWIMHEYNLHPNYLCEGVDPNYVLCRIRRNERARRKLEIQGELKQPNKKRI 190

BLAST of Cp4.1LG15g01810 vs. NCBI nr
Match: gi|659131362|ref|XP_008465646.1| (PREDICTED: NAC domain-containing protein 72-like [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 5.9e-62
Identity = 121/175 (69.14%), Postives = 141/175 (80.57%), Query Frame = 1

Query: 2   VRFRPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGMDGEDLYFFTKL 61
           V+FRPTD QLL YL+ KI+GQPYF+ A+ D DLYG  EPWEIW  F G+DGEDLYFFTKL
Sbjct: 18  VKFRPTDQQLLHYLYCKINGQPYFQGAIFDFDLYGGTEPWEIWQSFKGIDGEDLYFFTKL 77

Query: 62  KRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEH 121
           KRST N G+LSAHI+RK+GLANGTWSGENSA PIFA + D+ IIGY KRFRYEN Q+ EH
Sbjct: 78  KRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFANEDDEQIIGYRKRFRYENDQVEEH 137

Query: 122 HGEWIMHEYSLYQDSI-QQAVDSDYVLCRFKKNERLKRKLQKNLEEEQLSKRRMT 176
           HGEWIMHEY L+Q  +  Q VD +YVLCR +KNER KRKL+   E +Q +K+RMT
Sbjct: 138 HGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAKRKLEIR-ELQQPNKKRMT 191

BLAST of Cp4.1LG15g01810 vs. NCBI nr
Match: gi|659085698|ref|XP_008443554.1| (PREDICTED: protein SOMBRERO-like [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-61
Identity = 121/175 (69.14%), Postives = 141/175 (80.57%), Query Frame = 1

Query: 2   VRFRPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGMDGEDLYFFTKL 61
           V+FRPTD QLL+YL  KI+ QPYF+ AV D DLYG +EPWEIW  F G+DGEDLYFFTKL
Sbjct: 18  VKFRPTDQQLLRYLCCKIYDQPYFQGAVFDFDLYGGIEPWEIWQSFKGIDGEDLYFFTKL 77

Query: 62  KRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTD-KTIIGYCKRFRYENVQLPE 121
           KRST NSG LS HINRK+G ANGTWSGENSA PI+A + D + IIGY KRFRYEN QL E
Sbjct: 78  KRSTTNSGNLSTHINRKIGSANGTWSGENSATPIYANEDDHEQIIGYRKRFRYENDQLQE 137

Query: 122 HHGEWIMHEYSLYQDSIQ-QAVDSDYVLCRFKKNERLKRKLQKNLEEEQLSKRRM 175
           HHGEWIMHEYSL+QD ++ Q VD +YVLCR +KNER KRKL+   E +Q +K+R+
Sbjct: 138 HHGEWIMHEYSLHQDHLKCQGVDPNYVLCRIRKNERAKRKLKVQRELKQPNKKRI 192

BLAST of Cp4.1LG15g01810 vs. NCBI nr
Match: gi|449442783|ref|XP_004139160.1| (PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 5.0e-61
Identity = 116/175 (66.29%), Postives = 141/175 (80.57%), Query Frame = 1

Query: 2   VRFRPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGMDGEDLYFFTKL 61
           ++FRPTD QLL YLH KI+GQPYF+ AV D DLYG +EPWEIW  FGG+DGEDLYFFTKL
Sbjct: 22  LKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFTKL 81

Query: 62  KRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEH 121
           KRST N G LS H+NRK+GL NGTWSGENSA+PI+  +  + IIGY KRFRYEN  L EH
Sbjct: 82  KRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGYRKRFRYENESLEEH 141

Query: 122 HGEWIMHEYSLYQDSIQ-QAVDSDYVLCRFKKNERLKRK-LQKNLEEEQLSKRRM 175
           HGEWIMHEYS++Q  ++ + VDS+YVLCR +KNER+KRK L+   E +Q +K+R+
Sbjct: 142 HGEWIMHEYSMHQRYLRCEGVDSNYVLCRMRKNERVKRKLLEIQGEAKQPNKKRI 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXM1_CUCSA2.6e-6468.97Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1[more]
A0A0A0LFJ5_CUCSA1.4e-6266.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1[more]
A0A0A0M0I5_CUCSA3.5e-6166.29Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1[more]
A0A061FR05_THECC1.6e-2644.24Transcription factor-like protein OS=Theobroma cacao GN=TCM_044639 PE=4 SV=1[more]
A0A061FS95_THECC2.8e-2644.24Transcription factor-like protein OS=Theobroma cacao GN=TCM_044667 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449448878|ref|XP_004142192.1|3.7e-6468.97PREDICTED: NAC transcription factor 29-like [Cucumis sativus][more]
gi|778688961|ref|XP_011652873.1|2.0e-6266.47PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus][more]
gi|659131362|ref|XP_008465646.1|5.9e-6269.14PREDICTED: NAC domain-containing protein 72-like [Cucumis melo][more]
gi|659085698|ref|XP_008443554.1|1.7e-6169.14PREDICTED: protein SOMBRERO-like [Cucumis melo][more]
gi|449442783|ref|XP_004139160.1|5.0e-6166.29PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003441NAC-dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g01810.1Cp4.1LG15g01810.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003441NAC domainPFAMPF02365NAMcoord: 2..132
score: 4.9
IPR003441NAC domainPROFILEPS51005NACcoord: 1..153
score: 21
IPR003441NAC domainunknownSSF101941NAC domaincoord: 2..151
score: 1.27
NoneNo IPR availableunknownCoilCoilcoord: 150..176
scor
NoneNo IPR availablePANTHERPTHR31719FAMILY NOT NAMEDcoord: 3..168
score: 1.1
NoneNo IPR availablePANTHERPTHR31719:SF10SUBFAMILY NOT NAMEDcoord: 3..168
score: 1.1

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None