Cp4.1LG15g01770 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g01770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor-like protein
LocationCp4.1LG15 : 1423387 .. 1423889 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCATGGGAAATCTGGCTACATTTTGGAGGCACGAACGACAAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTTTGGACGTTTGTCGGCGCATATCAACCGCAAGGTCGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCAGCCAATCCAATTTTTGCTACCAAAACTGATAAAACAATAATCGGCTATTGCAAACGTTTTAGGTTCGTTCTGTCATTTTGATTTCAATTTTTGTTAGAATCTTTAACCTTATGTTTGTGTCCTTGGAACATTTAAGTCATTGAATACATTTTAGATACGAGAATGTCCAGTTGCCCGAGCAACATGGGGAATGGATTATGCATGAATATAGCTTACATCAAGATTCGATACAACAAGCGGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAACGAAAGACTTAAAAGAAAATTACAAAATGATCGTGAAGAGCAGCAACTTAACAAGAAAAAATGA

mRNA sequence

ATGGAGCCATGGGAAATCTGGCTACATTTTGGAGGCACGAACGACAAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTTTGGACGTTTGTCGGCGCATATCAACCGCAAGGTCGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCAGCCAATCCAATTTTTGCTACCAAAACTGATAAAACAATAATCGGCTATTGCAAACGTTTTAGATACGAGAATGTCCAGTTGCCCGAGCAACATGGGGAATGGATTATGCATGAATATAGCTTACATCAAGATTCGATACAACAAGCGGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAACGAAAGACTTAAAAGAAAATTACAAAATGATCGTGAAGAGCAGCAACTTAACAAGAAAAAATGA

Coding sequence (CDS)

ATGGAGCCATGGGAAATCTGGCTACATTTTGGAGGCACGAACGACAAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTTTGGACGTTTGTCGGCGCATATCAACCGCAAGGTCGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCAGCCAATCCAATTTTTGCTACCAAAACTGATAAAACAATAATCGGCTATTGCAAACGTTTTAGATACGAGAATGTCCAGTTGCCCGAGCAACATGGGGAATGGATTATGCATGAATATAGCTTACATCAAGATTCGATACAACAAGCGGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAACGAAAGACTTAAAAGAAAATTACAAAATGATCGTGAAGAGCAGCAACTTAACAAGAAAAAATGA

Protein sequence

MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQNDREEQQLNKKK
Homology
[Close]
BLAST of Cp4.1LG15g01770 vs. TrEMBL
Match: A0A0A0KXM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.8e-45
Identity = 90/137 (65.69%), Postives = 107/137 (78.10%), Query Frame = 1 

Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           +EPWEIW  FGG + +DLYFFTKLKRST N G LS HINRK+GL NGTWSGENSA+PI+ 
Sbjct: 54  VEPWEIWQSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYV 113

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQ-QAVDSDYVLCRFKKNERL 120
            K  + IIGY KRFRYEN  L E HGEWIMHEYSLH D ++ + VD +YVLCR +KN+R 
Sbjct: 114 NKDHEQIIGYRKRFRYENESLEEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRA 173

Query: 121 KRKLQNDREEQQLNKKK 137
           KRKL+ + E +Q NKK+
Sbjct: 174 KRKLETESELKQSNKKR 190

[Close]
BLAST of Cp4.1LG15g01770 vs. TrEMBL
Match: A0A0A0LFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.5e-43
Identity = 86/136 (63.24%), Postives = 105/136 (77.21%), Query Frame = 1 

Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           +EPWEIW  FGG + +DLYFFTKLKRST N G LS HINRK+GL NGTWSGENSA+PI+ 
Sbjct: 54  VEPWEIWQSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYV 113

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
            + D+ IIGY KRFRYEN    E HGEWIMHEY+LH + + + VD +YVLCR ++NER +
Sbjct: 114 NEDDQQIIGYRKRFRYENESSEEHHGEWIMHEYNLHPNYLCEGVDPNYVLCRIRRNERAR 173

Query: 121 RKLQNDREEQQLNKKK 137
           RKL+   E +Q NKK+
Sbjct: 174 RKLEIQGELKQPNKKR 189

[Close]
BLAST of Cp4.1LG15g01770 vs. TrEMBL
Match: A0A0A0M0I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.3e-43
Identity = 89/138 (64.49%), Postives = 108/138 (78.26%), Query Frame = 1 

Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           +EPWEIW  FGG + +DLYFFTKLKRST N G LS H+NRK+GL NGTWSGENSA+PI+ 
Sbjct: 84  VEPWEIWQSFGGIDGEDLYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYV 143

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQ-QAVDSDYVLCRFKKNERL 120
            +  + IIGY KRFRYEN  L E HGEWIMHEYS+HQ  ++ + VDS+YVLCR +KNER+
Sbjct: 144 NENCEEIIGYRKRFRYENESLEEHHGEWIMHEYSMHQRYLRCEGVDSNYVLCRMRKNERV 203

Query: 121 KRK-LQNDREEQQLNKKK 137
           KRK L+   E +Q NKK+
Sbjct: 204 KRKLLEIQGEAKQPNKKR 221

[Close]
BLAST of Cp4.1LG15g01770 vs. TrEMBL
Match: A0A061FRF9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_044619 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.4e-23
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 2   EPWEIWLHFGGTN---DKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPI 61
           EPWEIW  +GG N   D+DLYFFTKLK+ + N    S+ INR VG+  GTW GE+S  PI
Sbjct: 21  EPWEIWDLYGGCNLQSDEDLYFFTKLKKKSQN----SSRINRSVGM--GTWMGEDSGKPI 80

Query: 62  FATKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNER 121
           ++  +    +G+ KR RYE   +P Q G+WIMHEYSL+ D + +  D  YVLCR +KN+R
Sbjct: 81  YSHLSAVQPLGFKKRLRYEG-GVPHQVGQWIMHEYSLNIDLVPEN-DQGYVLCRLRKNDR 140

Query: 122 LKRKLQNDRE 129
            ++K +  R+
Sbjct: 141 EEKKAEKRRK 142

[Close]
BLAST of Cp4.1LG15g01770 vs. TrEMBL
Match: A0A061FR05_THECC (Transcription factor-like protein OS=Theobroma cacao GN=TCM_044639 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-21
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 1 

Query: 2   EPWEIWLHFGGTN---DKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPI 61
           EPWEIW   GG N   D+DLYFFTKLK+ + N  R    INR VG   GTW GE+S  PI
Sbjct: 45  EPWEIWDLHGGFNLQSDEDLYFFTKLKKKSQNGSR----INRSVG--TGTWMGEDSGKPI 104

Query: 62  FATKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNER 121
           ++  +    +G+ +RFRYE   +P+Q G+WIMHEYSL+   + +  D  YVLCR +KN+R
Sbjct: 105 YSRLSAIQPLGFKRRFRYEG-GVPQQVGQWIMHEYSLNTTLVPEN-DQGYVLCRVRKNDR 164

Query: 122 LKRKLQNDRE 129
            ++K +  R+
Sbjct: 165 EEKKAEKRRK 166

[Close]
BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: gi|659085698|ref|XP_008443554.1| (PREDICTED: protein SOMBRERO-like [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 95/138 (68.84%), Postives = 109/138 (78.99%), Query Frame = 1 

Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           +EPWEIW  F G + +DLYFFTKLKRST N G LS HINRK+G ANGTWSGENSA PI+A
Sbjct: 54  IEPWEIWQSFKGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGSANGTWSGENSATPIYA 113

Query: 61  TKTD-KTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQ-QAVDSDYVLCRFKKNER 120
            + D + IIGY KRFRYEN QL E HGEWIMHEYSLHQD ++ Q VD +YVLCR +KNER
Sbjct: 114 NEDDHEQIIGYRKRFRYENDQLQEHHGEWIMHEYSLHQDHLKCQGVDPNYVLCRIRKNER 173

Query: 121 LKRKLQNDREEQQLNKKK 137
            KRKL+  RE +Q NKK+
Sbjct: 174 AKRKLKVQRELKQPNKKR 191

[Close]
BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: gi|449448878|ref|XP_004142192.1| (PREDICTED: NAC transcription factor 29-like [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 90/137 (65.69%), Postives = 107/137 (78.10%), Query Frame = 1 

Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           +EPWEIW  FGG + +DLYFFTKLKRST N G LS HINRK+GL NGTWSGENSA+PI+ 
Sbjct: 54  VEPWEIWQSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYV 113

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQ-QAVDSDYVLCRFKKNERL 120
            K  + IIGY KRFRYEN  L E HGEWIMHEYSLH D ++ + VD +YVLCR +KN+R 
Sbjct: 114 NKDHEQIIGYRKRFRYENESLEEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRA 173

Query: 121 KRKLQNDREEQQLNKKK 137
           KRKL+ + E +Q NKK+
Sbjct: 174 KRKLETESELKQSNKKR 190

[Close]
BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: gi|659131362|ref|XP_008465646.1| (PREDICTED: NAC domain-containing protein 72-like [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 5.6e-44
Identity = 95/136 (69.85%), Postives = 108/136 (79.41%), Query Frame = 1 

Query: 2   EPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFAT 61
           EPWEIW  F G + +DLYFFTKLKRST N G+LSAHI+RK+GLANGTWSGENSA PIFA 
Sbjct: 55  EPWEIWQSFKGIDGEDLYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFAN 114

Query: 62  KTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSI-QQAVDSDYVLCRFKKNERLK 121
           + D+ IIGY KRFRYEN Q+ E HGEWIMHEY LHQ  +  Q VD +YVLCR +KNER K
Sbjct: 115 EDDEQIIGYRKRFRYENDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAK 174

Query: 122 RKLQNDREEQQLNKKK 137
           RKL+  RE QQ NKK+
Sbjct: 175 RKLE-IRELQQPNKKR 189

[Close]
BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: gi|778688961|ref|XP_011652873.1| (PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 3.6e-43
Identity = 86/136 (63.24%), Postives = 105/136 (77.21%), Query Frame = 1 

Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           +EPWEIW  FGG + +DLYFFTKLKRST N G LS HINRK+GL NGTWSGENSA+PI+ 
Sbjct: 54  VEPWEIWQSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYV 113

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
            + D+ IIGY KRFRYEN    E HGEWIMHEY+LH + + + VD +YVLCR ++NER +
Sbjct: 114 NEDDQQIIGYRKRFRYENESSEEHHGEWIMHEYNLHPNYLCEGVDPNYVLCRIRRNERAR 173

Query: 121 RKLQNDREEQQLNKKK 137
           RKL+   E +Q NKK+
Sbjct: 174 RKLEIQGELKQPNKKR 189

[Close]
BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: gi|449442783|ref|XP_004139160.1| (PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.0e-42
Identity = 89/138 (64.49%), Postives = 108/138 (78.26%), Query Frame = 1 

Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           +EPWEIW  FGG + +DLYFFTKLKRST N G LS H+NRK+GL NGTWSGENSA+PI+ 
Sbjct: 58  VEPWEIWQSFGGIDGEDLYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYV 117

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQ-QAVDSDYVLCRFKKNERL 120
            +  + IIGY KRFRYEN  L E HGEWIMHEYS+HQ  ++ + VDS+YVLCR +KNER+
Sbjct: 118 NENCEEIIGYRKRFRYENESLEEHHGEWIMHEYSMHQRYLRCEGVDSNYVLCRMRKNERV 177

Query: 121 KRK-LQNDREEQQLNKKK 137
           KRK L+   E +Q NKK+
Sbjct: 178 KRKLLEIQGEAKQPNKKR 195

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g01770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g01770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXM1_CUCSA7.8e-4565.69Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1[more]
A0A0A0LFJ5_CUCSA2.5e-4363.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1[more]
A0A0A0M0I5_CUCSA7.3e-4364.49Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1[more]
A0A061FRF9_THECC8.4e-2348.46Uncharacterized protein OS=Theobroma cacao GN=TCM_044619 PE=4 SV=1[more]
A0A061FR05_THECC2.7e-2147.69Transcription factor-like protein OS=Theobroma cacao GN=TCM_044639 PE=4 SV=1[more]
BLAST of Cp4.1LG15g01770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085698|ref|XP_008443554.1|1.1e-4468.84PREDICTED: protein SOMBRERO-like [Cucumis melo][more]
gi|449448878|ref|XP_004142192.1|1.1e-4465.69PREDICTED: NAC transcription factor 29-like [Cucumis sativus][more]
gi|659131362|ref|XP_008465646.1|5.6e-4469.85PREDICTED: NAC domain-containing protein 72-like [Cucumis melo][more]
gi|778688961|ref|XP_011652873.1|3.6e-4363.24PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus][more]
gi|449442783|ref|XP_004139160.1|1.0e-4264.49PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003441NAC-dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g01770.1Cp4.1LG15g01770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003441NAC domainPFAMPF02365NAMcoord: 7..95
score: 1.
IPR003441NAC domainPROFILEPS51005NACcoord: 1..116
score: 19
IPR003441NAC domainunknownSSF101941NAC domaincoord: 2..114
score: 1.19
NoneNo IPR availableunknownCoilCoilcoord: 113..136
scor
NoneNo IPR availablePANTHERPTHR31719FAMILY NOT NAMEDcoord: 2..131
score: 1.2
NoneNo IPR availablePANTHERPTHR31719:SF10SUBFAMILY NOT NAMEDcoord: 2..131
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g01770Cucumber (Chinese Long) v3cpecucB0297
Cp4.1LG15g01770Wax gourdcpewgoB0327
Cp4.1LG15g01770Cucurbita pepo (Zucchini)cpecpeB273
Cp4.1LG15g01770Cucumber (Gy14) v1cgycpeB0399
Cp4.1LG15g01770Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g01770Cucurbita maxima (Rimu)cmacpeB615
Cp4.1LG15g01770Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g01770Cucurbita moschata (Rifu)cmocpeB564
Cp4.1LG15g01770Wild cucumber (PI 183967)cpecpiB242
Cp4.1LG15g01770Cucumber (Chinese Long) v2cpecuB238
Cp4.1LG15g01770Bottle gourd (USVL1VR-Ls)cpelsiB191
Cp4.1LG15g01770Watermelon (Charleston Gray)cpewcgB216
Cp4.1LG15g01770Watermelon (Charleston Gray)cpewcgB243
Cp4.1LG15g01770Watermelon (97103) v1cpewmB256
Cp4.1LG15g01770Watermelon (97103) v1cpewmB235
Cp4.1LG15g01770Melon (DHL92) v3.5.1cpemeB229
Cp4.1LG15g01770Cucumber (Gy14) v2cgybcpeB331
Cp4.1LG15g01770Melon (DHL92) v3.6.1cpemedB268
Cp4.1LG15g01770Silver-seed gourdcarcpeB0114
Cp4.1LG15g01770Silver-seed gourdcarcpeB1094