Cp4.1LG15g01550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g01550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG15 : 1280859 .. 1281098 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTCAAATAATACATAGGAGATTTCCCCGCCCTCCCTTACAGGGTGACCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCGCACATTTGA

mRNA sequence

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTCAAATAATACATAGGAGATTTCCCCGCCCTCCCTTACAGGGTGACCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCGCACATTTGA

Coding sequence (CDS)

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTCAAATAATACATAGGAGATTTCCCCGCCCTCCCTTACAGGGTGACCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCGCACATTTGA

Protein sequence

MKLWMICLVLISMVVMARADEEESKPIEFLNCNQPKPPPACLQIIHRRFPRPPLQGDRGCNAITRCRGGIGSGRPPPHI
Homology
[Close]
BLAST of Cp4.1LG15g01550 vs. TrEMBL
Match: A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-07
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 

Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C   +    P  P   DRG
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 61 CNAITRCRG 69
          C+AI RCRG
Sbjct: 61 CSAIHRCRG 67

[Close]
BLAST of Cp4.1LG15g01550 vs. TrEMBL
Match: A0A0A0LI94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-06
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1 

Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          MK W+ICL LI M+V+ +    E+K ++F++ CNQP PPP C    +R         +R 
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTC---PNRDKVEEANPYNRD 60

Query: 61 CNAITRCRGG 70
          C+AI RCRGG
Sbjct: 61 CSAINRCRGG 67

[Close]
BLAST of Cp4.1LG15g01550 vs. NCBI nr
Match: gi|700211681|gb|KGN66777.1| (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 

Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C   +    P  P   DRG
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 61 CNAITRCRG 69
          C+AI RCRG
Sbjct: 61 CSAIHRCRG 67

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g01550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g01550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0X3_CUCSA8.4e-0744.93Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1[more]
A0A0A0LI94_CUCSA7.1e-0644.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1[more]
BLAST of Cp4.1LG15g01550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g01550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211681|gb|KGN66777.1|1.2e-0644.93hypothetical protein Csa_1G690160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g01550.1Cp4.1LG15g01550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g01550Silver-seed gourdcarcpeB1094
Cp4.1LG15g01550Cucumber (Chinese Long) v3cpecucB0297
Cp4.1LG15g01550Wax gourdcpewgoB0327
Cp4.1LG15g01550Cucurbita pepo (Zucchini)cpecpeB273
Cp4.1LG15g01550Cucumber (Gy14) v1cgycpeB0399
Cp4.1LG15g01550Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g01550Cucurbita maxima (Rimu)cmacpeB615
Cp4.1LG15g01550Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g01550Cucurbita moschata (Rifu)cmocpeB564
Cp4.1LG15g01550Wild cucumber (PI 183967)cpecpiB242
Cp4.1LG15g01550Cucumber (Chinese Long) v2cpecuB238
Cp4.1LG15g01550Bottle gourd (USVL1VR-Ls)cpelsiB209
Cp4.1LG15g01550Watermelon (Charleston Gray)cpewcgB240
Cp4.1LG15g01550Watermelon (97103) v1cpewmB258
Cp4.1LG15g01550Melon (DHL92) v3.5.1cpemeB229
Cp4.1LG15g01550Cucumber (Gy14) v2cgybcpeB331
Cp4.1LG15g01550Melon (DHL92) v3.6.1cpemedB268