Cp4.1LG15g00980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g00980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein family
LocationCp4.1LG15 : 783921 .. 785768 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAATGTGTACAAACTCCATTGTTGTATAATCAAAACTTGCAAGCAGAATGATCCTCGCTCTCTCCGTAGCCTCCTTCTTTCCTGTGCTGCTGCAGCTCCCGAAAGCTTATCTTATGCTCGCTATGTATTCTCTCGGATTCCTTCTCCAGATACCTTCGCTTACAACACCATCATACGAGCACATTCTCACTATTTTCCTTCTCATTCTTTGTCCTGTTTCTCTTCTATGCGGTGCAATGGCGTCCCCTGTGATCATTTCACATTCCCATTTGTTCTCAAGGCATGTTCTCGATTGCAAATGGATCTTCACTTGCATTCCCTTATTGTTAAGTATGGTTTGGACTCTGATATTTTTGTGCAGAATTCGTTGATGAGTGTTTATGGTTGCTGTGGGTCTGTTGAGATTGCAGTCAAGGTGTTTGATGAAATGTCTGAGAGAGATTCTGTTTCTTGGTCTACTGTTATTGTTTCTTTTGTTAATAATGGCTATGCATCTGAGGCTTTGGCCTTGTTTAAGGCAATGCAGCTGGAAGATAAAGTAGTTCCTGATGAGGTAACCATGCTCAGTGTGATATCTGCGATCTCGCACTTGGGAGCATTAGAATTGGGTCGTTGGGTTCGGATGTTTATCGACAAGCTTGGCTTGGAAATTTCTGTTGCTTTGGGCACTGCTCTTATTGATATGTTCTCCAGATGTGGCTCCATTGATGAATCAGTTGTAGTATTTGAAGAGATGGCGGTGAGGAATGTGTTGACATGGACCGCGCTGATAAACGGGTTTGCAGTCCACGGTCGCAGTAGGGAGGCTTTGGCAGTGTTCCACAGCATGAGGAATTCAGGGGTACAGCCAGATTATATAACCTTTTCTAGTGTCTTAGTAGCTTGTAGCCATGGCGGTCTTGTAAGAGAAGGTCGGGATATTTTCGAAAGCATTTCGAAGGATTATAAGATGGTTCCTTATCTAGAGCATTATGGCTGCATGGTTGATCTTCTTGGCCGTGCAGGGCTGCTGAATGAAGCTTACGAATTTGTCGAAAGAATGCCAATGAAGCCGAATTCAATCATCTGGAGGACCCTTCTCGGAGCATGTGCGAATCACAACGATCTCGATATAGCTGAGAAGGTGAAGGCGAAGATCTCTGAGCTAAACTCGTCGCACGATGGCGATTTTGTGCTTCTATCCAATGTGTATGGAGCAGCTGGTAGATGGGTAGAGAAGACATCGGTGAGGAGTTGGATGAGAAGCAAAAGAATAGGCAAAGAACCTGGCTGTAGTTTGATTAATATAGACCAAGCGACTCACGAGTTTGTTTCTGGGGACGATTCTCATCCACAGTCCGAGGAGATAACGAAGTTCTTGAGCTTGATTATTGGGAATCTAAGAAACAGCGGTTACACGCCTCGCACGGAAAATGTACTACACGATATCGACGAGGAAGAAAGAGAGCATTCCTTAAGTTATCACAGTGAGAAATTAGCCGTGGCTTTTGCTCTTCTTAGTTTAAAGGATAAAAGGACGATAAGGGTCATGAAGAATCTTAGAATTTGTCATGACTGTCATTCGTTTATGAAACATATTTCAGACAGGTATGAGAGGAAGATAATCATTCGGGATCGCAATCGGTTTCATCATTTTGATAAAGGATCATGTTCATGTCATGATTATTGGTGAAATTTCTCCCTTGAGTTGTTCCCTCTTCCCATTTATCTGTTCTTCAACTACGCCAATCCTTTAATGGTTATTACAATTTCATGAACTTCAATTATAAATCAGAACCAAGAATCAGCATATCACCGAATAGATGGTGATGTTTTCGACGTTGGACAGGTGAATATCATGTAA

mRNA sequence

ATGAATAATGTGTACAAACTCCATTGTTGTATAATCAAAACTTGCAAGCAGAATGATCCTCGCTCTCTCCGTAGCCTCCTTCTTTCCTGTGCTGCTGCAGCTCCCGAAAGCTTATCTTATGCTCGCTATGTATTCTCTCGGATTCCTTCTCCAGATACCTTCGCTTACAACACCATCATACGAGCACATTCTCACTATTTTCCTTCTCATTCTTTGTCCTGTTTCTCTTCTATGCGGTGCAATGGCGTCCCCTGTGATCATTTCACATTCCCATTTGTTCTCAAGGCATGTTCTCGATTGCAAATGGATCTTCACTTGCATTCCCTTATTGTTAAGTATGGTTTGGACTCTGATATTTTTGTGCAGAATTCGTTGATGAGTGTTTATGGTTGCTGTGGGTCTGTTGAGATTGCAGTCAAGAACCAAGAATCAGCATATCACCGAATAGATGGTGATGTTTTCGACGTTGGACAGGTGAATATCATGTAA

Coding sequence (CDS)

ATGAATAATGTGTACAAACTCCATTGTTGTATAATCAAAACTTGCAAGCAGAATGATCCTCGCTCTCTCCGTAGCCTCCTTCTTTCCTGTGCTGCTGCAGCTCCCGAAAGCTTATCTTATGCTCGCTATGTATTCTCTCGGATTCCTTCTCCAGATACCTTCGCTTACAACACCATCATACGAGCACATTCTCACTATTTTCCTTCTCATTCTTTGTCCTGTTTCTCTTCTATGCGGTGCAATGGCGTCCCCTGTGATCATTTCACATTCCCATTTGTTCTCAAGGCATGTTCTCGATTGCAAATGGATCTTCACTTGCATTCCCTTATTGTTAAGTATGGTTTGGACTCTGATATTTTTGTGCAGAATTCGTTGATGAGTGTTTATGGTTGCTGTGGGTCTGTTGAGATTGCAGTCAAGAACCAAGAATCAGCATATCACCGAATAGATGGTGATGTTTTCGACGTTGGACAGGTGAATATCATGTAA

Protein sequence

MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTIIRAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIFVQNSLMSVYGCCGSVEIAVKNQESAYHRIDGDVFDVGQVNIM
Homology
[Close]
BLAST of Cp4.1LG15g00980 vs. Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-16
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 1 

Query: 22  SLRSLLLSCAAAAPE-SLSYARYVFSRIPSPDTFAYNTIIRAHSHYFPSHSLSCF-SSMR 81
           S  S+L  CA +  E S++YA  +F  I  P TF +NT+IR + +        CF + M 
Sbjct: 65  SASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMM 124

Query: 82  CNGVPCDHFTFPFVLKACSRLQM---DLHLHSLIVKYGLDSDIFVQNSLMSVYGCCGSVE 139
             G   D+FT+P +LKAC+RL+       +H  + K GL++D+FVQNSL+++YG CG +E
Sbjct: 125 QRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEME 184

[Close]
BLAST of Cp4.1LG15g00980 vs. Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-15
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAA-AAPESLSYARYVFSRIPSPDTFAYNTI 60
           +  + + H  ++KT   +D  S   L+   A    P+++SYA  + +RI SP+ F +N++
Sbjct: 52  LTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSV 111

Query: 61  IRAHSHYF-PSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRL---QMDLHLHSLIVKYGL 120
           IRA+++   P  +L+ F  M    V  D ++F FVLKAC+     +    +H L +K GL
Sbjct: 112 IRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGL 171

Query: 121 DSDIFVQNSLMSVYGCCGSVEIAVK 141
            +D+FV+N+L++VYG  G  EIA K
Sbjct: 172 VTDVFVENTLVNVYGRSGYFEIARK 196

[Close]
BLAST of Cp4.1LG15g00980 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           +  + + H  +I+T   +DP S   L    A ++  SL YAR VF  IP P++FA+NT+I
Sbjct: 43  LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102

Query: 61  RAH-SHYFPSHSLSCFSSMRCNGVPC--DHFTFPFVLKAC---SRLQMDLHLHSLIVKYG 120
           RA+ S   P  S+  F  M  +   C  + +TFPF++KA    S L +   LH + VK  
Sbjct: 103 RAYASGPDPVLSIWAFLDM-VSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 162

Query: 121 LDSDIFVQNSLMSVYGCCGSVEIAVK 141
           + SD+FV NSL+  Y  CG ++ A K
Sbjct: 163 VGSDVFVANSLIHCYFSCGDLDSACK 187

[Close]
BLAST of Cp4.1LG15g00980 vs. Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           M  + ++H  +IKT   +D  +   +L  C A+ P  ++YA  VF+RI   + F +NTII
Sbjct: 38  MRELKQIHASLIKTGLISDTVTASRVLAFCCAS-PSDMNYAYLVFTRINHKNPFVWNTII 97

Query: 61  RAHSHY-FPSHSLSCFSSMRCNG--VPCDHFTFPFVLKACSRLQM---DLHLHSLIVKYG 120
           R  S   FP  ++S F  M C+   V     T+P V KA  RL        LH +++K G
Sbjct: 98  RGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEG 157

Query: 121 LDSDIFVQNSLMSVYGCCG 134
           L+ D F++N+++ +Y  CG
Sbjct: 158 LEDDSFIRNTMLHMYVTCG 175

[Close]
BLAST of Cp4.1LG15g00980 vs. Swiss-Prot
Match: PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 50/141 (35.46%), Postives = 76/141 (53.90%), Query Frame = 1 

Query: 6   KLHCCIIKTCKQNDPRSLRSLLLSCAAAAPES--LSYARYVFSRIPSPDTFAYNTIIRAH 65
           +LH  +IK+    +   L  L+  C    PE+  LSYAR VF  I  P  + +N++IR +
Sbjct: 24  QLHGLMIKSSVIRNVIPLSRLIDFCTTC-PETMNLSYARSVFESIDCPSVYIWNSMIRGY 83

Query: 66  SHY-FPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRL---QMDLHLHSLIVKYGLDSDI 125
           S+   P  +L  +  M   G   D+FTFP+VLKACS L   Q    +H  +VK G + ++
Sbjct: 84  SNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNM 143

Query: 126 FVQNSLMSVYGCCGSVEIAVK 141
           +V   L+ +Y CCG V   ++
Sbjct: 144 YVSTCLLHMYMCCGEVNYGLR 163

[Close]
BLAST of Cp4.1LG15g00980 vs. TrEMBL
Match: A0A0A0LC76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G611320 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-58
Identity = 114/140 (81.43%), Postives = 127/140 (90.71%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVY+LHC IIK+ KQNDP SLR+LLLSC AAAPESLSYARYVFSRIPSPDT AYNTII
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           R+HS +FPSHSL  F SMR NG+P D+FTFPFVLKACSRLQ++LHLHSLIVKYGLDSDIF
Sbjct: 61  RSHSRFFPSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRLQINLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 141
           VQN+L+ VYG CGS+E+AVK
Sbjct: 121 VQNALICVYGYCGSLEMAVK 140

[Close]
BLAST of Cp4.1LG15g00980 vs. TrEMBL
Match: A0A061E5E7_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_008277 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.9e-46
Identity = 93/135 (68.89%), Postives = 112/135 (82.96%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLH  +IKT  QNDP SLR LLLSCAA+APESLSYAR +F+RIPSPDTFAYNT+I
Sbjct: 1   MNNVYKLHARLIKTGLQNDPLSLRPLLLSCAASAPESLSYARCLFARIPSPDTFAYNTLI 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAH+H FPSH++S FS+M   G+  DHFTFPFV KAC+RLQ+ L  H+L++K GL SDI+
Sbjct: 61  RAHAHSFPSHAVSLFSAMHRGGLSPDHFTFPFVFKACARLQIGLETHALVIKLGLASDIY 120

Query: 121 VQNSLMSVYGCCGSV 136
           +QN+L+S YG  GSV
Sbjct: 121 IQNALISFYGSLGSV 135

[Close]
BLAST of Cp4.1LG15g00980 vs. TrEMBL
Match: A5BC56_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014979 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.8e-41
Identity = 89/148 (60.14%), Postives = 106/148 (71.62%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MN++YKLH  ++KT   N P +LR LLLSCAA+AP SLSYAR +F  I  PDTFA+NTII
Sbjct: 1   MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAH+   PS SLS FS M   GV  DHFTFPFVLKAC+RLQ  L LHSL+ K G DSD++
Sbjct: 61  RAHADSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACARLQTGLDLHSLLFKLGFDSDVY 120

Query: 121 VQNSLMSVYGCCGSVEIAVKNQESAYHR 149
           VQN L+  YGCCG ++ A+K  E    R
Sbjct: 121 VQNGLIHFYGCCGFLDFALKAFEEMPER 148

[Close]
BLAST of Cp4.1LG15g00980 vs. TrEMBL
Match: A0A0D2NH23_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G020900 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.8e-41
Identity = 90/135 (66.67%), Postives = 107/135 (79.26%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLH  +IKT  QNDP SLR LLLS AAAAP SL +A  VF+R+P PDTFAYNT+I
Sbjct: 1   MNNVYKLHVRLIKTGLQNDPVSLRRLLLSFAAAAPASLPHAHSVFARVPFPDTFAYNTLI 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAH+H  PSHS+S FS+MR +GV  D+FTFPFVLKAC+RL +    H+LI+K GL SDI+
Sbjct: 61  RAHAHSSPSHSVSLFSAMRRDGVSPDNFTFPFVLKACARLHIGHDAHALIIKLGLGSDIY 120

Query: 121 VQNSLMSVYGCCGSV 136
           VQN L+S+YG  GSV
Sbjct: 121 VQNGLISLYGSLGSV 135

[Close]
BLAST of Cp4.1LG15g00980 vs. TrEMBL
Match: A0A059BE70_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01976 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-37
Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MN+VYKLH  +IKT  Q+D  +LR LLLSCAA+APESL +AR +F+ I SPDT AY+TII
Sbjct: 1   MNDVYKLHSLVIKTGLQDDSATLRRLLLSCAASAPESLPHARSLFAGISSPDTVAYDTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRL-QMDLHLHSLIVKYGLDSDI 120
           R H+   P HSLS F+ M   GV  D+FTFPFVLKACSRL +M   LH+LI K GL SD+
Sbjct: 61  RCHARSSPPHSLSFFAQMLRRGVSPDNFTFPFVLKACSRLREMGHGLHALIAKLGLGSDV 120

Query: 121 FVQNSLMSVYGCCGSVEIAVK 141
           +VQN+L+S YGC G+VE A K
Sbjct: 121 YVQNALISAYGCAGAVESAPK 141

[Close]
BLAST of Cp4.1LG15g00980 vs. TAIR10
Match: AT1G31920.1 (AT1G31920.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-17
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 1 

Query: 22  SLRSLLLSCAAAAPE-SLSYARYVFSRIPSPDTFAYNTIIRAHSHYFPSHSLSCF-SSMR 81
           S  S+L  CA +  E S++YA  +F  I  P TF +NT+IR + +        CF + M 
Sbjct: 65  SASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMM 124

Query: 82  CNGVPCDHFTFPFVLKACSRLQM---DLHLHSLIVKYGLDSDIFVQNSLMSVYGCCGSVE 139
             G   D+FT+P +LKAC+RL+       +H  + K GL++D+FVQNSL+++YG CG +E
Sbjct: 125 QRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEME 184

[Close]
BLAST of Cp4.1LG15g00980 vs. TAIR10
Match: AT4G18840.1 (AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-16
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAA-AAPESLSYARYVFSRIPSPDTFAYNTI 60
           +  + + H  ++KT   +D  S   L+   A    P+++SYA  + +RI SP+ F +N++
Sbjct: 52  LTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSV 111

Query: 61  IRAHSHYF-PSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRL---QMDLHLHSLIVKYGL 120
           IRA+++   P  +L+ F  M    V  D ++F FVLKAC+     +    +H L +K GL
Sbjct: 112 IRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGL 171

Query: 121 DSDIFVQNSLMSVYGCCGSVEIAVK 141
            +D+FV+N+L++VYG  G  EIA K
Sbjct: 172 VTDVFVENTLVNVYGRSGYFEIARK 196

[Close]
BLAST of Cp4.1LG15g00980 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 6.2e-16
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           +  + + H  +I+T   +DP S   L    A ++  SL YAR VF  IP P++FA+NT+I
Sbjct: 43  LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102

Query: 61  RAH-SHYFPSHSLSCFSSMRCNGVPC--DHFTFPFVLKAC---SRLQMDLHLHSLIVKYG 120
           RA+ S   P  S+  F  M  +   C  + +TFPF++KA    S L +   LH + VK  
Sbjct: 103 RAYASGPDPVLSIWAFLDM-VSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 162

Query: 121 LDSDIFVQNSLMSVYGCCGSVEIAVK 141
           + SD+FV NSL+  Y  CG ++ A K
Sbjct: 163 VGSDVFVANSLIHCYFSCGDLDSACK 187

[Close]
BLAST of Cp4.1LG15g00980 vs. TAIR10
Match: AT3G05240.1 (AT3G05240.1 mitochondrial editing factor 19)

HSP 1 Score: 77.4 bits (189), Expect = 9.0e-15
Identity = 50/141 (35.46%), Postives = 76/141 (53.90%), Query Frame = 1 

Query: 6   KLHCCIIKTCKQNDPRSLRSLLLSCAAAAPES--LSYARYVFSRIPSPDTFAYNTIIRAH 65
           +LH  +IK+    +   L  L+  C    PE+  LSYAR VF  I  P  + +N++IR +
Sbjct: 24  QLHGLMIKSSVIRNVIPLSRLIDFCTTC-PETMNLSYARSVFESIDCPSVYIWNSMIRGY 83

Query: 66  SHY-FPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRL---QMDLHLHSLIVKYGLDSDI 125
           S+   P  +L  +  M   G   D+FTFP+VLKACS L   Q    +H  +VK G + ++
Sbjct: 84  SNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNM 143

Query: 126 FVQNSLMSVYGCCGSVEIAVK 141
           +V   L+ +Y CCG V   ++
Sbjct: 144 YVSTCLLHMYMCCGEVNYGLR 163

[Close]
BLAST of Cp4.1LG15g00980 vs. TAIR10
Match: AT2G42920.1 (AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 9.0e-15
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           M  + ++H  +IKT   +D  +   +L  C A+ P  ++YA  VF+RI   + F +NTII
Sbjct: 38  MRELKQIHASLIKTGLISDTVTASRVLAFCCAS-PSDMNYAYLVFTRINHKNPFVWNTII 97

Query: 61  RAHSHY-FPSHSLSCFSSMRCNG--VPCDHFTFPFVLKACSRLQM---DLHLHSLIVKYG 120
           R  S   FP  ++S F  M C+   V     T+P V KA  RL        LH +++K G
Sbjct: 98  RGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEG 157

Query: 121 LDSDIFVQNSLMSVYGCCG 134
           L+ D F++N+++ +Y  CG
Sbjct: 158 LEDDSFIRNTMLHMYVTCG 175

[Close]
BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: gi|449468588|ref|XP_004152003.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-58
Identity = 114/140 (81.43%), Postives = 127/140 (90.71%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVY+LHC IIK+ KQNDP SLR+LLLSC AAAPESLSYARYVFSRIPSPDT AYNTII
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           R+HS +FPSHSL  F SMR NG+P D+FTFPFVLKACSRLQ++LHLHSLIVKYGLDSDIF
Sbjct: 61  RSHSRFFPSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRLQINLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 141
           VQN+L+ VYG CGS+E+AVK
Sbjct: 121 VQNALICVYGYCGSLEMAVK 140

[Close]
BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: gi|659093094|ref|XP_008447368.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 3.4e-56
Identity = 111/140 (79.29%), Postives = 125/140 (89.29%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MN+VYKLHC IIK+ KQ DP SLR+LLLSC A APESLSY RYVFSRIPSPDTFA NTII
Sbjct: 1   MNSVYKLHCYIIKSGKQTDPLSLRTLLLSCVATAPESLSYTRYVFSRIPSPDTFACNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           R+HSH FPSHSLS F +MR NG+P D+FTFPFVLKACSRLQ++LHLHSLIVK+GLDSDIF
Sbjct: 61  RSHSHLFPSHSLSYFFAMRSNGIPFDNFTFPFVLKACSRLQINLHLHSLIVKHGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 141
           VQN+L+ VYG CGS+E+AVK
Sbjct: 121 VQNALICVYGYCGSLEMAVK 140

[Close]
BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: gi|590691296|ref|XP_007043745.1| (Tetratricopeptide repeat-like superfamily protein [Theobroma cacao])

HSP 1 Score: 192.2 bits (487), Expect = 7.1e-46
Identity = 93/135 (68.89%), Postives = 112/135 (82.96%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLH  +IKT  QNDP SLR LLLSCAA+APESLSYAR +F+RIPSPDTFAYNT+I
Sbjct: 1   MNNVYKLHARLIKTGLQNDPLSLRPLLLSCAASAPESLSYARCLFARIPSPDTFAYNTLI 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAH+H FPSH++S FS+M   G+  DHFTFPFV KAC+RLQ+ L  H+L++K GL SDI+
Sbjct: 61  RAHAHSFPSHAVSLFSAMHRGGLSPDHFTFPFVFKACARLQIGLETHALVIKLGLASDIY 120

Query: 121 VQNSLMSVYGCCGSV 136
           +QN+L+S YG  GSV
Sbjct: 121 IQNALISFYGSLGSV 135

[Close]
BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: gi|147806246|emb|CAN72195.1| (hypothetical protein VITISV_014979 [Vitis vinifera])

HSP 1 Score: 176.4 bits (446), Expect = 4.0e-41
Identity = 89/148 (60.14%), Postives = 106/148 (71.62%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MN++YKLH  ++KT   N P +LR LLLSCAA+AP SLSYAR +F  I  PDTFA+NTII
Sbjct: 1   MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAH+   PS SLS FS M   GV  DHFTFPFVLKAC+RLQ  L LHSL+ K G DSD++
Sbjct: 61  RAHADSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACARLQTGLDLHSLLFKLGFDSDVY 120

Query: 121 VQNSLMSVYGCCGSVEIAVKNQESAYHR 149
           VQN L+  YGCCG ++ A+K  E    R
Sbjct: 121 VQNGLIHFYGCCGFLDFALKAFEEMPER 148

[Close]
BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: gi|823130148|ref|XP_012452177.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Gossypium raimondii])

HSP 1 Score: 175.6 bits (444), Expect = 6.9e-41
Identity = 90/135 (66.67%), Postives = 107/135 (79.26%), Query Frame = 1 

Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLH  +IKT  QNDP SLR LLLS AAAAP SL +A  VF+R+P PDTFAYNT+I
Sbjct: 1   MNNVYKLHVRLIKTGLQNDPVSLRRLLLSFAAAAPASLPHAHSVFARVPFPDTFAYNTLI 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAH+H  PSHS+S FS+MR +GV  D+FTFPFVLKAC+RL +    H+LI+K GL SDI+
Sbjct: 61  RAHAHSSPSHSVSLFSAMRRDGVSPDNFTFPFVLKACARLHIGHDAHALIIKLGLGSDIY 120

Query: 121 VQNSLMSVYGCCGSV 136
           VQN L+S+YG  GSV
Sbjct: 121 VQNGLISLYGSLGSV 135

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g00980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR68_ARATH7.6e-1639.34Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN... [more]
PP321_ARATH4.9e-1535.17Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN... [more]
PP175_ARATH1.1e-1437.67Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
PP200_ARATH1.6e-1334.53Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
PP214_ARATH1.6e-1335.46Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th... [more]
BLAST of Cp4.1LG15g00980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC76_CUCSA1.1e-5881.43Uncharacterized protein OS=Cucumis sativus GN=Csa_3G611320 PE=4 SV=1[more]
A0A061E5E7_THECC4.9e-4668.89Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_0082... [more]
A5BC56_VITVI2.8e-4160.14Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014979 PE=4 SV=1[more]
A0A0D2NH23_GOSRA4.8e-4166.67Uncharacterized protein OS=Gossypium raimondii GN=B456_002G020900 PE=4 SV=1[more]
A0A059BE70_EUCGR1.4e-3761.70Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01976 PE=4 SV=1[more]
BLAST of Cp4.1LG15g00980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31920.14.3e-1739.34 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G18840.12.8e-1635.17 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT2G29760.16.2e-1637.67 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G05240.19.0e-1535.46 mitochondrial editing factor 19[more]
AT2G42920.19.0e-1534.53 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449468588|ref|XP_004152003.1|1.6e-5881.43PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis s... [more]
gi|659093094|ref|XP_008447368.1|3.4e-5679.29PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis m... [more]
gi|590691296|ref|XP_007043745.1|7.1e-4668.89Tetratricopeptide repeat-like superfamily protein [Theobroma cacao][more]
gi|147806246|emb|CAN72195.1|4.0e-4160.14hypothetical protein VITISV_014979 [Vitis vinifera][more]
gi|823130148|ref|XP_012452177.1|6.9e-4166.67PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Gossypium... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g00980.1Cp4.1LG15g00980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 161..162
scor
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 19..140
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g00980CsaV3_3G028420Cucumber (Chinese Long) v3cpecucB0297
Cp4.1LG15g00980Bhi05G000112Wax gourdcpewgoB0327
Cp4.1LG15g00980CsGy3G025090Cucumber (Gy14) v2cgybcpeB331
Cp4.1LG15g00980Carg16906Silver-seed gourdcarcpeB1057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g00980Cucurbita pepo (Zucchini)cpecpeB155
Cp4.1LG15g00980Cucurbita pepo (Zucchini)cpecpeB258
Cp4.1LG15g00980Cucurbita pepo (Zucchini)cpecpeB265
Cp4.1LG15g00980Cucurbita pepo (Zucchini)cpecpeB273
Cp4.1LG15g00980Cucurbita pepo (Zucchini)cpecpeB284
Cp4.1LG15g00980Cucumber (Gy14) v1cgycpeB0379
Cp4.1LG15g00980Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g00980Cucurbita maxima (Rimu)cmacpeB615
Cp4.1LG15g00980Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g00980Cucurbita moschata (Rifu)cmocpeB564
Cp4.1LG15g00980Cucurbita moschata (Rifu)cmocpeB848
Cp4.1LG15g00980Wild cucumber (PI 183967)cpecpiB242
Cp4.1LG15g00980Cucumber (Chinese Long) v2cpecuB238
Cp4.1LG15g00980Bottle gourd (USVL1VR-Ls)cpelsiB209
Cp4.1LG15g00980Watermelon (Charleston Gray)cpewcgB240
Cp4.1LG15g00980Watermelon (97103) v1cpewmB257
Cp4.1LG15g00980Melon (DHL92) v3.5.1cpemeB231
Cp4.1LG15g00980Cucumber (Gy14) v2cgybcpeB341
Cp4.1LG15g00980Melon (DHL92) v3.6.1cpemedB270
Cp4.1LG15g00980Melon (DHL92) v3.6.1cpemedB283
Cp4.1LG15g00980Silver-seed gourdcarcpeB0332
Cp4.1LG15g00980Silver-seed gourdcarcpeB1094
Cp4.1LG15g00980Silver-seed gourdcarcpeB1329
Cp4.1LG15g00980Cucumber (Chinese Long) v3cpecucB0308