Cp4.1LG14g10650 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g10650
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 8808763 .. 8810778 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTTCTGATGCTCAAATCTCCCTTTCTTCTACGAAGGGCGGATTGCAGAGCTTGTGCTTGTTCCTGTATTTGCAATATCATGTCTCTTGTTTTGCCGCAGGTGTCTAAAAGCTTTATGAATCCTTCGACCAATTCGTCCACCAATTCCCTGTTCTGGTGGCTCGATAAAACCTGTTTGGTGGAAGCCATGTGGAGAAGCTCGTCCATACAAGCGTATAAATCGTCCAGTCCCTGCAGGCCATTGCAGATTGACTTGGAGGTTGAAGGAGATGAGCTCTCCAATGCCTTCAACTTGCTCAGTTGCTCTTCGATTCTGAGAGTGGTGGGATGGGATCTGGAGGGTAGACTGATTGATCGTAAATGGTAACGAGCAGCCATTGTTGGTTGCTTTAGAAAGCTTAACTTTGAGAAGTCTGCTGAGTTTGATGATGTTAAAACTCTATGAATCTGTTTATATATGGGGGCACATTGCAGGGAAGATAAGAGGGAGGAGACAGCGAGCGTTGGTTTCAATGAATGCAACTTGGAAGCAGGGAAATGGCCGGCGGGAGTGTCCTTTTCTTGCTCTAAAAACCGAGAAAGGTCAGCTCATTTCTTGCTTTGAATTGTCTCCTTGTTTGGAATATAAAATTCAGGCTGCACAAATCTCACGTTTAGGAGCAAGTGCAATGCATATGCTGAAGCTTTTTTTATACTAAAATGAAAAGGAAACAGAAATTTAATGTTAAATTTTGTTTGCTTTCTCTTCAATCTTGTCGTGGGGCAAAGGATTGGCACCCATGTTTCATATAGCCATGACAAGTGCTGATAGATTCTTCTTACAAATGGCATGTGGTTTTTGGTTCATTTATTTGATGAGTATGATTAGTTTGATCTAGATTATAATTATTAGTGAATTGGCAAGAACTAAAATAATTGTTCATGCAACTTAGAAAGGAAAATGAAATACTTACAAATTGGAGGACCAAAATATAATATTTCTAAGCTTAAAACATCACAATAAACATAGAAATTTGTGGTGGAAAATAGGATTTCAATCATAGTTAAAGAAAAGAACACTTTTGAGTGTTGTTTGGAGTGTTGTTTGGATTTTCAAGAGTTCTCCTGACATGAAATGAAAATTTGGAATTAAGTTATTTGTTAGTGAATAAAAAAGATCATTTCCCACATTGTAGATAGCCGGATACAACCAGGAGGCAATGATGCTTAATTTCTTTGCATCAGGTTGCGCGAAAAAAGATGGAATGGGAGAATCTTGGAGGCAAAAAAACAGAACATTAAAAAGGAGGCCACGTACATCGCAGAACACTGAACATGTCCATTGCAAACAAGGCTCTCATGGATCTAACATGTGATCGTACAGTTCAAAAGGTACGCATTACAGAAACAATTAACAATCCTTTTTTGAAGTAACATCAAATTAGGAGATACTTTAGCTCTAAAACTCAAAGCTATAAGAAAAAGAACTAAAATATATACATATATATTTTTTCATTGAAGGAAAGGACTAAAGGAAACTCCTGAAAGACTGAGAGTATCAAAAAGAGTTATTATTGAGTCTAGTTGTGCCTGTGAACCGAACCATATGTTTCATTAGGTAGCCAAAAGCTTTACCCCAAATTCCGGGGGATTCTTCTAAAGTCGTCCTGCACATGCCCCCTCTAACTTCCAGGATGGCTTGACATCTATCTATCAAACATCAAGATTAAAGCACTCCTAAATCCACTCTAGTCTCGACCTTTCATGTGTTGTGGTTTGGTGATTGCAATTGCTAGCCTAAGCAATGTTCAAGTGTCTGTATTACTGCACGTGTGCTGTGTCGGCATCCTTGTAATTCTACTCCCCAATTACTCTCCATCTCCATCGCCCTGCAGGTCTCTTCTCGTGTACATGGGTTTTCTTTTCCAATGAAAAGGAGTATTTAATAGCTTTTGCACGACATGCTCCATCCACTTATAATGCGTCATGTCATTAGTATTTAATATTTATATTATAGTTTAATCAATTCCTA

mRNA sequence

ATGGCGTTTCTGATGCTCAAATCTCCCTTTCTTCTACGAAGGGCGGATTGCAGAGCTTGTGCTTGTTCCTGTATTTGCAATATCATGTCTCTTGTTTTGCCGCAGGTGTCTAAAAGCTTTATGAATCCTTCGACCAATTCGTCCACCAATTCCCTGTTCTGGTGGCTCGATAAAACCTGTTTGGTGGAAGCCATGTGGAGAAGCTCGTCCATACAAGCGTATAAATCGTCCAGTCCCTGCAGGCCATTGCAGATTGACTTGGAGGTTGAAGGAGATGAGCTCTCCAATGCCTTCAACTTGCTCAGTTGCTCTTCGATTCTGAGAGTGGTGGGATGGGATCTGGAGGGTAGACTGATTGATCGGAAGATAAGAGGGAGGAGACAGCGAGCGTTGGTTTCAATGAATGCAACTTGGAAGCAGGGAAATGGCCGGCGGGAGTGTCCTTTTCTTGCTCTAAAAACCGAGAAAGGTTGCGCGAAAAAAGATGGAATGGGAGAATCTTGGAGGCAAAAAAACAGAACATTAAAAAGGAGGCCACGTACATCGCAGAACACTGAACATGTCCATTGCAAACAAGGCTCTCATGGATCTAACATGTGATCGTACAGTTCAAAAGGAAAGGACTAAAGGAAACTCCTGAAAGACTGAGAGTATCAAAAAGAGTTATTATTGAGTCTAGTTGTGCCTGTGAACCGAACCATATGTTTCATTAGGTAGCCAAAAGCTTTACCCCAAATTCCGGGGGATTCTTCTAAAGTCGTCCTGCACATGCCCCCTCTAACTTCCAGGATGGCTTGACATCTATCTATCAAACATCAAGATTAAAGCACTCCTAAATCCACTCTAGTCTCGACCTTTCATGTGTTGTGGTTTGGTGATTGCAATTGCTAGCCTAAGCAATGTTCAAGTGTCTGTATTACTGCACGTGTGCTGTGTCGGCATCCTTGTAATTCTACTCCCCAATTACTCTCCATCTCCATCGCCCTGCAGGTCTCTTCTCGTGTACATGGGTTTTCTTTTCCAATGAAAAGGAGTATTTAATAGCTTTTGCACGACATGCTCCATCCACTTATAATGCGTCATGTCATTAGTATTTAATATTTATATTATAGTTTAATCAATTCCTA

Coding sequence (CDS)

ATGGCGTTTCTGATGCTCAAATCTCCCTTTCTTCTACGAAGGGCGGATTGCAGAGCTTGTGCTTGTTCCTGTATTTGCAATATCATGTCTCTTGTTTTGCCGCAGGTGTCTAAAAGCTTTATGAATCCTTCGACCAATTCGTCCACCAATTCCCTGTTCTGGTGGCTCGATAAAACCTGTTTGGTGGAAGCCATGTGGAGAAGCTCGTCCATACAAGCGTATAAATCGTCCAGTCCCTGCAGGCCATTGCAGATTGACTTGGAGGTTGAAGGAGATGAGCTCTCCAATGCCTTCAACTTGCTCAGTTGCTCTTCGATTCTGAGAGTGGTGGGATGGGATCTGGAGGGTAGACTGATTGATCGGAAGATAAGAGGGAGGAGACAGCGAGCGTTGGTTTCAATGAATGCAACTTGGAAGCAGGGAAATGGCCGGCGGGAGTGTCCTTTTCTTGCTCTAAAAACCGAGAAAGGTTGCGCGAAAAAAGATGGAATGGGAGAATCTTGGAGGCAAAAAAACAGAACATTAAAAAGGAGGCCACGTACATCGCAGAACACTGAACATGTCCATTGCAAACAAGGCTCTCATGGATCTAACATGTGA

Protein sequence

MAFLMLKSPFLLRRADCRACACSCICNIMSLVLPQVSKSFMNPSTNSSTNSLFWWLDKTCLVEAMWRSSSIQAYKSSSPCRPLQIDLEVEGDELSNAFNLLSCSSILRVVGWDLEGRLIDRKIRGRRQRALVSMNATWKQGNGRRECPFLALKTEKGCAKKDGMGESWRQKNRTLKRRPRTSQNTEHVHCKQGSHGSNM
Homology
[Close]
BLAST of Cp4.1LG14g10650 vs. TrEMBL
Match: A0A0A0L1K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002440 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.2e-31
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1 

Query: 33  LPQVSKSFMNPSTNSSTNSLFWWLDKTCLVEAMWRSSSIQAYKSSSPCRPLQIDLEVEGD 92
           L  VSKSFMNPST+SST+  FW LDKTCLV+A+WRSSS++AYKSSSP +PLQIDLEVEGD
Sbjct: 51  LELVSKSFMNPSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGD 110

Query: 93  ELSNAFNLLSCSSILRVVGWDLEG 117
           E SN FNLLSCSSILRVVGWDLEG
Sbjct: 111 EFSNGFNLLSCSSILRVVGWDLEG 134

[Close]
BLAST of Cp4.1LG14g10650 vs. NCBI nr
Match: gi|700200490|gb|KGN55623.1| (hypothetical protein Csa_3G002440 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 4.6e-31
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1 

Query: 33  LPQVSKSFMNPSTNSSTNSLFWWLDKTCLVEAMWRSSSIQAYKSSSPCRPLQIDLEVEGD 92
           L  VSKSFMNPST+SST+  FW LDKTCLV+A+WRSSS++AYKSSSP +PLQIDLEVEGD
Sbjct: 51  LELVSKSFMNPSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGD 110

Query: 93  ELSNAFNLLSCSSILRVVGWDLEG 117
           E SN FNLLSCSSILRVVGWDLEG
Sbjct: 111 EFSNGFNLLSCSSILRVVGWDLEG 134

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g10650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g10650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1K1_CUCSA3.2e-3182.14Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002440 PE=4 SV=1[more]
BLAST of Cp4.1LG14g10650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g10650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200490|gb|KGN55623.1|4.6e-3182.14hypothetical protein Csa_3G002440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g10650.1Cp4.1LG14g10650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g10650CmaCh16G012680Cucurbita maxima (Rimu)cmacpeB345
Cp4.1LG14g10650Bhi11G000236Wax gourdcpewgoB0273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g10650Cucurbita pepo (Zucchini)cpecpeB241
Cp4.1LG14g10650Cucurbita pepo (Zucchini)cpecpeB244
Cp4.1LG14g10650Cucurbita pepo (Zucchini)cpecpeB252
Cp4.1LG14g10650Cucumber (Gy14) v1cgycpeB0036
Cp4.1LG14g10650Cucumber (Gy14) v1cgycpeB0845
Cp4.1LG14g10650Cucurbita maxima (Rimu)cmacpeB815
Cp4.1LG14g10650Cucurbita maxima (Rimu)cmacpeB872
Cp4.1LG14g10650Cucurbita moschata (Rifu)cmocpeB091
Cp4.1LG14g10650Cucurbita moschata (Rifu)cmocpeB308
Cp4.1LG14g10650Cucurbita moschata (Rifu)cmocpeB608
Cp4.1LG14g10650Cucurbita moschata (Rifu)cmocpeB769
Cp4.1LG14g10650Wild cucumber (PI 183967)cpecpiB215
Cp4.1LG14g10650Wild cucumber (PI 183967)cpecpiB230
Cp4.1LG14g10650Cucumber (Chinese Long) v2cpecuB212
Cp4.1LG14g10650Cucumber (Chinese Long) v2cpecuB228
Cp4.1LG14g10650Bottle gourd (USVL1VR-Ls)cpelsiB165
Cp4.1LG14g10650Bottle gourd (USVL1VR-Ls)cpelsiB183
Cp4.1LG14g10650Watermelon (Charleston Gray)cpewcgB193
Cp4.1LG14g10650Watermelon (Charleston Gray)cpewcgB201
Cp4.1LG14g10650Watermelon (97103) v1cpewmB202
Cp4.1LG14g10650Watermelon (97103) v1cpewmB230
Cp4.1LG14g10650Melon (DHL92) v3.5.1cpemeB184
Cp4.1LG14g10650Melon (DHL92) v3.5.1cpemeB206
Cp4.1LG14g10650Cucumber (Gy14) v2cgybcpeB325
Cp4.1LG14g10650Melon (DHL92) v3.6.1cpemedB231
Cp4.1LG14g10650Melon (DHL92) v3.6.1cpemedB249
Cp4.1LG14g10650Silver-seed gourdcarcpeB0223
Cp4.1LG14g10650Silver-seed gourdcarcpeB0559
Cp4.1LG14g10650Silver-seed gourdcarcpeB0601
Cp4.1LG14g10650Cucumber (Chinese Long) v3cpecucB0255
Cp4.1LG14g10650Cucumber (Chinese Long) v3cpecucB0282
Cp4.1LG14g10650Wax gourdcpewgoB0278
Cp4.1LG14g10650Wax gourdcpewgoB0303