Cp4.1LG14g07590 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g07590
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPolygalacturonase, putative
LocationCp4.1LG14 : 5968750 .. 5970828 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTATGCCAAAAGAAAAGTGTTCAATATTATTGATTTTGGCGCCACACCTGATGAAAGAACAGATAGCAGTAAGGTACACAAACTTCACTAATCTATGAAACCCTTTTTTTCTCTTTCAATTCTCTTATATATTATATCCATCGCATACCATCTTTATTTCATGATAATCAAATCAATAGTTAACCCTAAGTTCATGAACTTAGGAGTATTTTTATATGAATTTATTTATCATAGAGTATCTTGAGAAGTTATTAGTCGTAGAACATTTCTAAGAGAAGTTACTAGTAATCGAACATTTTTTTGTTAGGAATCACGAACCTCCACAATGAAGTAGATATCAATGGAGATGATTTCTTACTTATAAACTCATGATCATTCCCTAAATTAGCCAAATGTGGGACTCTCTCCCAACAATCCTCCCCTCGAACAAAGTACACTATAAAATCTTCCCTGAGACCTATGGAGCCCTTAAACAAAATACACCCTTTGTTCGACACTTGAGAATTCTATTGACATGGCTAAGTTAAGGGCATGGCTCTGATACCATGTTAGGAATCACGAACCTCCACAATTGTATGATATTGTCTACTTTGAACAAAAGCTCTCATGGTTTTGCTTTTGGTTTTCGAAAAGGTCTCATACCAATGGAGATATATTCGTTACTTATAAACCCATAATCACTCCCTAAATTAGGCCAGGTGGGACTCCTTCCCAACTATCTTCAACGTTGTTAAGAGAAGAATTGTTGGAGTATTTTCTCCCTTTAAATAAAAGTTAGATAGGTTTTATTCGCAATAGAAAATTGAAAAATATTGTGCTAGAAGTACTTAGTTTTAAATTTTAAATGTTAATGTATTTCATTTGTAGGCTTTGCGTGCGGCATGGAGTGAAGCGTGTGCAAATAATGGAGGTGGTGTGATTTTGGTACCAGCGGTAGGGAGGTTCTTGGTCTTGCCCGTGTTGCTTCAAGGTCCTTGCAAAGGCATCATTGAACTGCAGGTTGATGGCGATCTCTTGGCTTCCTCACACAAGGCTTTTGCCATTGGTTACTCTTGGTTCAAATTCTATGGAGTCAACAACTTGGTTATCAAGGGTCTAGGCCGCTTCGTTGGCCGAGGTCGAACCGCTTGGCCTTACAATACCTGCAAATATGGATCATGCAGTCGCCTTCCTATTGTGAGTCTATAAGTTACCATTTGTTTTCGACATATTTGTTGTAATATAACGTTTGATTTCTCGTAGACTATAAATCTCCAATCAATCAACAATTTAAGGATCAGGGACATAACATCGGTAAATAGCAAACTCTACCATTTCAACGTGCATGGATGCAATGATGTAGTGTTTGATAACGTTAAAGTAATAGCACCAGGTGAAAGTCCTAACACGAATGGCATCCACATTTCCAAGTCGACGGGTGTCACCATAAAAAACTCATTCATCGCCACAGGAGATGATTGCATCTCCTTTGGCCGTGGAAGTAAGGACGTTAAAATAACCAACGTTCATTGCGGTCCTGGCCATGGAATTAGCATCGGTAGTCTCGGAAAGTTCCCAGATGAACCAAATATTAATGGAATCATAGTAAGCGACTCCAAATTCGTTGGCACGACAAATGGTGTTCAGATCAAAACATGGTCCAAATCATATCCAAGTGTGGTTAGCAATATTACATTTGTGAATCTCGAAATGTATAATGTCGAACGCCCTATCATGATCGATCAAAACTACTGTCCCAACAATGCTTGCAAGAACAATAAAGTGGTACGAATCTTGAAATTTGTTTGACTTCGACCAAAGTTGATATTACATTATAACGAATGATTCTAAATCGAAATGTGAATGATTGCAGAGCGTGTCAAGAATACAAATTAAAGATGTGAAGTTTGAAAACATATGGGGAACATCATCGGAGCACTTGGCAGTAACTTTGAAATGCAGCCAAGTTTTTCCATGCCAAGGCATAGTGTTAAACAACATCAACCTAGTCTTCAATGGCAGTGGCTCCTCAACTTCGATATGCCAAAACGTCGAGGGTTCGGCTTCTCGCCCTCTTCGGCCTCCCTCTTGCCTTTAA

mRNA sequence

TGCTATGCCAAAAGAAAAGTGTTCAATATTATTGATTTTGGCGCCACACCTGATGAAAGAACAGATAGCACGGTAGGGAGGTTCTTGGTCTTGCCCGTGTTGCTTCAAGGTCCTTGCAAAGGCATCATTGAACTGCAGGTTGATGGCGATCTCTTGGCTTCCTCACACAAGGCTTTTGCCATTGGTTACTCTTGGTTCAAATTCTATGGAGTCAACAACTTGGTTATCAAGGGTCTAGGCCGCTTCGTTGGCCGAGGTCGAACCGCTTGGCCTTACAATACCTGCAAATATGGATCATGCAGTCGCCTTCCTATTAGCGTGTCAAGAATACAAATTAAAGATGTGAAGTTTGAAAACATATGGGGAACATCATCGGAGCACTTGGCAGTAACTTTGAAATGCAGCCAAGTTTTTCCATGCCAAGGCATAGTGTTAAACAACATCAACCTAGTCTTCAATGGCAGTGGCTCCTCAACTTCGATATGCCAAAACGTCGAGGGTTCGGCTTCTCGCCCTCTTCGGCCTCCCTCTTGCCTTTAA

Coding sequence (CDS)

TGCTATGCCAAAAGAAAAGTGTTCAATATTATTGATTTTGGCGCCACACCTGATGAAAGAACAGATAGCACGGTAGGGAGGTTCTTGGTCTTGCCCGTGTTGCTTCAAGGTCCTTGCAAAGGCATCATTGAACTGCAGGTTGATGGCGATCTCTTGGCTTCCTCACACAAGGCTTTTGCCATTGGTTACTCTTGGTTCAAATTCTATGGAGTCAACAACTTGGTTATCAAGGGTCTAGGCCGCTTCGTTGGCCGAGGTCGAACCGCTTGGCCTTACAATACCTGCAAATATGGATCATGCAGTCGCCTTCCTATTAGCGTGTCAAGAATACAAATTAAAGATGTGAAGTTTGAAAACATATGGGGAACATCATCGGAGCACTTGGCAGTAACTTTGAAATGCAGCCAAGTTTTTCCATGCCAAGGCATAGTGTTAAACAACATCAACCTAGTCTTCAATGGCAGTGGCTCCTCAACTTCGATATGCCAAAACGTCGAGGGTTCGGCTTCTCGCCCTCTTCGGCCTCCCTCTTGCCTTTAA

Protein sequence

CYAKRKVFNIIDFGATPDERTDSTVGRFLVLPVLLQGPCKGIIELQVDGDLLASSHKAFAIGYSWFKFYGVNNLVIKGLGRFVGRGRTAWPYNTCKYGSCSRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNGSGSSTSICQNVEGSASRPLRPPSCL
Homology
[Close]
BLAST of Cp4.1LG14g07590 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.3e-12
Identity = 48/176 (27.27%), Postives = 83/176 (47.16%), Query Frame = 1 

Query: 8   FNIIDFGATPDERTDSTV----------------------GRFLVLPVLLQGPCKGIIEL 67
           F+I   GA+ + +TDST                       G FLV P+   GPCKG + +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVTI 100

Query: 68  QVDGDLLASSH-KAFAIGYSWFKFYGVNNLVIKGLGRFVGRGRTAWPYNTC-KYGSCSRL 127
           QV+G+LLA++    +    +W +   V+NLVI G G+  G+G   W  N+C K   C  L
Sbjct: 101 QVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYDCKIL 160

Query: 128 PISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNGSGSST 160
           P S+    + + +   I   +S+   + +     + C+ +++ ++N+   G   +T
Sbjct: 161 PNSLVMDFVNNGEVSGITLLNSKFFHMNM-----YKCKDMLIKDVNVTAPGDSPNT 211

[Close]
BLAST of Cp4.1LG14g07590 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-11
Identity = 46/176 (26.14%), Postives = 80/176 (45.45%), Query Frame = 1 

Query: 8   FNIIDFGATPDERTDSTV----------------------GRFLVLPVLLQGPCKGIIEL 67
           F+I   GA+ + +TDST                       G FLV  +   GPCKG + +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTI 100

Query: 68  QVDGDLLASSH-KAFAIGYSWFKFYGVNNLVIKGLGRFVGRGRTAWPYNTC-KYGSCSRL 127
           QVDG+LLA++    +    +W +   V+NLVI G G   G+G   W  N+C K   C  L
Sbjct: 101 QVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCKIL 160

Query: 128 PISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNGSGSST 160
           P S+    + + +   +   +S+   + +     + C+ +++ ++ +   G   +T
Sbjct: 161 PNSLVMDFVNNGEVSGVTLLNSKFFHMNM-----YQCKNMLIKDVTVTAPGDSPNT 211

[Close]
BLAST of Cp4.1LG14g07590 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 46/176 (26.14%), Postives = 80/176 (45.45%), Query Frame = 1 

Query: 8   FNIIDFGATPDERTDSTV----------------------GRFLVLPVLLQGPCKGIIEL 67
           F+I   GA+ + +TDST                       G FLV  +   GPCKG + +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTI 100

Query: 68  QVDGDLLASSH-KAFAIGYSWFKFYGVNNLVIKGLGRFVGRGRTAWPYNTC-KYGSCSRL 127
           QVDG+LLA++    +    +W +   V+NLVI G G   G+G   W  N+C K   C  L
Sbjct: 101 QVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCKIL 160

Query: 128 PISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNGSGSST 160
           P S+    + + +   +   +S+   + +     + C+ +++ ++ +   G   +T
Sbjct: 161 PNSLVMDFVNNGEVSGVTLLNSKFFHMNM-----YRCKDMLIKDVTVTAPGDSPNT 211

[Close]
BLAST of Cp4.1LG14g07590 vs. Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 54/185 (29.19%), Postives = 79/185 (42.70%), Query Frame = 1 

Query: 7   VFNIIDFGATPDERT--------------DSTV--------GRFLVLPVLLQGPCKGIIE 66
           V++I  FGA  D  T              DS V        G FL  PV+  GPCK  + 
Sbjct: 51  VYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVT 110

Query: 67  LQVDGDLLASSHKAFAIGYS---WFKFYGVNNLVIKGLGRFVGRGRTAWPYNTC-KYGSC 126
           + V G ++A++      GY+   WF F  V+NLV+ G G F G+G   W  + C K   C
Sbjct: 111 VNVIGTIIATTS-----GYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCGKKVQC 170

Query: 127 SRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNGSGSSTS 166
           +  P S+    +K+V+   I   +++   + L  ++    Q I L       N  G   S
Sbjct: 171 NLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLS 230

[Close]
BLAST of Cp4.1LG14g07590 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 41/135 (30.37%), Postives = 67/135 (49.63%), Query Frame = 1 

Query: 21  TDSTV----GRFLVLPVLLQGPCKGIIELQVDGDLLASSHKAFAIGYSWFKFYGVNNLVI 80
           T STV    G +L+  V L+GPCK  IE+ V G + A +  +     +W +FY V N  +
Sbjct: 61  TPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPNWVRFYSVENFKM 120

Query: 81  KGLGRFVGRGRTAWPYNTCKYGSC-SRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCS 140
            G G F G+G  A+  NTC+     S+LP+++    + +   ++I    S+   +     
Sbjct: 121 FGGGIFDGQGSIAYEKNTCENREFRSKLPVNIRFDFVTNALIQDITSKDSKLFHI----- 180

Query: 141 QVFPCQGIVLNNINL 151
            VF C+ I L  + +
Sbjct: 181 NVFACKNITLERLKI 190

[Close]
BLAST of Cp4.1LG14g07590 vs. TrEMBL
Match: A0A0A0L660_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063620 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.2e-18
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 99  SCSRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNGSGSS 158
           SC+   ++ S +QIKDV+++ I G+S+  +AV  +CSQV PCQGIVL +INL FNG G +
Sbjct: 166 SCAPNKMNKSMVQIKDVRYQGITGSSNTPVAVDFECSQVLPCQGIVLQDINLTFNGGGKT 225

Query: 159 TSICQNVEGSASRPLRPPSCL 180
           TSIC NV+GSAS    PPSCL
Sbjct: 226 TSICHNVKGSASGQQLPPSCL 246

[Close]
BLAST of Cp4.1LG14g07590 vs. TrEMBL
Match: M0S3Y0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 55/167 (32.93%), Postives = 85/167 (50.90%), Query Frame = 1 

Query: 7   VFNIIDFGATPDERTDSTV----------------------GRFLVLPVLLQGPCKGIIE 66
           V+N+ D+GA  D +TD+T                       G +L+ P + +GPCKGI+ 
Sbjct: 28  VYNVKDYGAAGDGQTDNTKAFETAWSAACAVQGKATIVIPEGAYLLGPTIFKGPCKGIMV 87

Query: 67  LQVDGDLLASSHKAFAIGYSWFKFYGVNNLVIKGLGRFVGRGRTAWPYNTC-KYGSCSRL 126
           +QV G LLAS+H   A    W  F  +N LVI G GRF G+G +AWPYN C K  +C  L
Sbjct: 88  MQVKGQLLASTHLE-AYNQYWLHFQYINGLVISGGGRFNGQGASAWPYNQCKKTNNCKPL 147

Query: 127 PISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINL 151
           P+++    + +   ++I    S+   +      VF  + I+ ++I +
Sbjct: 148 PMNLVFSFVTNATIKSISSIDSKFFHI-----HVFESRNIIFDSIKI 188

[Close]
BLAST of Cp4.1LG14g07590 vs. TrEMBL
Match: A0A087HKH8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G020100 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 67/205 (32.68%), Postives = 95/205 (46.34%), Query Frame = 1 

Query: 7   VFNIIDFGATPDERTDS----------------------TVGRFLVLPVLLQGPCKGIIE 66
           VF+I  FGA  D  T+S                        G FL  PV+  GPC+  I 
Sbjct: 49  VFDITKFGAVGDGSTNSFKAFLNTWIKVCASPVPATLLVPKGEFLTGPVIFAGPCESKIT 108

Query: 67  LQVDGDLLASSHKAFAIGYS---WFKFYGVNNLVIKGLGRFVGRGRTAWPYNTCKYGSCS 126
           ++V G + A++      GY+   W  F  V+N+V+ G G F G+G   W  + C      
Sbjct: 109 VEVHGTVSATTS-----GYATPEWILFEHVDNVVLTGTGTFHGKGEKVWAADGCGKKLQC 168

Query: 127 RLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVF---NGSGSS 176
            LP + SR+ I DV F+N+ GTS     V + CS+  PC+G+ + ++NL F   NG GS 
Sbjct: 169 NLPPTDSRVAISDVLFKNVRGTSITKDVVQIMCSKSLPCKGVNVVDVNLNFVGKNGGGSD 228

[Close]
BLAST of Cp4.1LG14g07590 vs. TrEMBL
Match: M0S0F8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.9e-17
Identity = 55/167 (32.93%), Postives = 84/167 (50.30%), Query Frame = 1 

Query: 7   VFNIIDFGATPDERTDSTV----------------------GRFLVLPVLLQGPCKGIIE 66
           V+N+ D+GA  D +TD+T                       G +L+ P + +GPCKGI+ 
Sbjct: 28  VYNVKDYGAAGDGKTDNTKAFETAWSAACAAQGKATIVIPEGAYLLGPTIFKGPCKGIMV 87

Query: 67  LQVDGDLLASSHKAFAIGYSWFKFYGVNNLVIKGLGRFVGRGRTAWPYNTC-KYGSCSRL 126
           +QV G LLAS+H      Y W  F  +N LVI G GRF G+G +AWPYN C K   C  L
Sbjct: 88  MQVKGQLLASTHLEDYNQY-WLHFQYINGLVISGGGRFNGQGASAWPYNQCKKTNDCKPL 147

Query: 127 PISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINL 151
           P+++    + +   ++I    S+   +      VF  + I+ ++I +
Sbjct: 148 PMNLVFSFVTNATIKSISSIDSKFFHI-----HVFESRNIIFDSIKI 188

[Close]
BLAST of Cp4.1LG14g07590 vs. TrEMBL
Match: M0UD85_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.1e-17
Identity = 65/192 (33.85%), Postives = 93/192 (48.44%), Query Frame = 1 

Query: 7   VFNIIDFGATPDERTDSTV----------------------GRFLVLPVLLQGPCKGIIE 66
           V+N+ D+GAT D +TD+T                       G +L+ P + +GPCKGI+ 
Sbjct: 28  VYNVKDYGATGDGQTDNTKAFEAAWSAACTVEGRTTIVIPEGAYLLGPTIFRGPCKGIMV 87

Query: 67  LQVDGDLLASSHKAFAIGYSWFKFYGVNNLVIKGLGRFVGRGRTAWPYNTC-KYGSCSRL 126
           +QV G LLAS+H   A   +W  F  +N LVI G G+F G+G +AWPYN C K  +C  L
Sbjct: 88  MQVKGQLLASTHLE-AYKENWLDFQYINGLVISGGGKFDGQGASAWPYNQCKKILNCKPL 147

Query: 127 P----------ISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINL-VF 162
           P           ++S I   D KF ++    S +  +T    ++  C  I     NL +F
Sbjct: 148 PKTLVFNFVTNATISSINFIDSKFFHVHVFKSRN--ITFDSIRINDCISIGSGCTNLTIF 207

[Close]
BLAST of Cp4.1LG14g07590 vs. TAIR10
Match: AT2G33160.1 (AT2G33160.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein)

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-16
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1 

Query: 95  CKYGSCSRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNG 154
           C +G C       S +QIKDVK+ NIWGTS+   A+ ++CS+ FPCQ + L+NINL + G
Sbjct: 318 CPHGQCDSPGKYASHVQIKDVKYNNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVG 377

Query: 155 -SGSSTSICQNVEGSASRPLRPPSC 179
             G  T++C+NV GS    + P +C
Sbjct: 378 RDGLVTALCENVGGSIRGKIVPANC 402

[Close]
BLAST of Cp4.1LG14g07590 vs. TAIR10
Match: AT1G78400.1 (AT1G78400.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1 

Query: 106 SVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNG-SGSSTSICQN 165
           S S+IQI+DVKF+NIWGTS+   AV L+CS+  PC+ + L NIN+V  G  G +TS+C+N
Sbjct: 329 SFSKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINIVHRGRDGPATSVCEN 388

Query: 166 VEGSASRPLRPPSCL 180
           V G     + PPSC+
Sbjct: 389 VGGWIGGKISPPSCI 403

[Close]
BLAST of Cp4.1LG14g07590 vs. TAIR10
Match: AT2G15450.1 (AT2G15450.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-16
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 1 

Query: 95  CKYGSCSRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNG 154
           C +  C       S +QI+++K +NI+GTS   +AV L+CS++FPC+ + L +IN+  NG
Sbjct: 317 CPHPPCEHERKGESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQNG 376

Query: 155 --SGSSTSICQNVEGSASRPLRPPSCL 180
              GSSTS+C+NV+G A   + PP CL
Sbjct: 377 VKDGSSTSVCENVDGFARGKMFPPHCL 403

[Close]
BLAST of Cp4.1LG14g07590 vs. TAIR10
Match: AT1G17150.1 (AT1G17150.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 8.9e-16
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 95  CKYGSCSRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNG 154
           C Y  CS +    S IQI++V  +NIWGTS   +AV  +CS+ FPC+ + L +INL  +G
Sbjct: 318 CPYPPCSNM--GDSHIQIRNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLIDINLTHHG 377

Query: 155 -SGSSTSICQNVEGSASRPLRPPSCL 180
             G ++++C+NV+GSA+  + PP CL
Sbjct: 378 VDGPASALCENVDGSATGKMVPPHCL 401

[Close]
BLAST of Cp4.1LG14g07590 vs. TAIR10
Match: AT2G15470.1 (AT2G15470.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 7.6e-15
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 95  CKYGSCSRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNG 154
           C +  C       S +QI+++K +NI+GTS   +A+ L+CS++FPC+ + L +IN+  NG
Sbjct: 317 CPHPPCEHERKGESHVQIQNLKLKNIYGTSKNKVAMNLQCSKIFPCKNVELIDINIKQNG 376

Query: 155 --SGSSTSICQNVEGSASRPLRPPSCL 180
              GSSTS+C+NV+G A   + P  CL
Sbjct: 377 VKDGSSTSVCENVDGFARGKMFPQHCL 403

[Close]
BLAST of Cp4.1LG14g07590 vs. NCBI nr
Match: gi|764522914|ref|XP_011457655.1| (PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-19
Identity = 56/156 (35.90%), Postives = 90/156 (57.69%), Query Frame = 1 

Query: 26  GRFLVLPVLLQGPCKGIIELQVDGDLLASSHKA-FAIGYSWFKFYGVNNLVIKGLGRFVG 85
           G + +     +GPCK  IELQV G L A    A  +   +W +F  ++N  + G G F G
Sbjct: 130 GTYKLKEASFKGPCKAPIELQVQGTLEAPQASAQLSKPDTWIEFSNLDNFTLLGGGTFDG 189

Query: 86  RGRTAWPYNTC-KYGSCSRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGI 145
           +G+ AW  N C K   C+ + I+ S+++I +V F+NI GTSS  +AV + C+   PC+ +
Sbjct: 190 QGQKAWLANDCHKNSKCTSIAIAPSKVKISNVSFKNIRGTSSTPVAVKIACATGLPCEKV 249

Query: 146 VLNNINLVFNGS-GSSTSICQNVEGSASRPLRPPSC 179
            + +I+L ++G+ GS TS C NV+ + +R     +C
Sbjct: 250 EMTDIDLKYSGNEGSITSQCSNVKPTVTRVANTLAC 285

[Close]
BLAST of Cp4.1LG14g07590 vs. NCBI nr
Match: gi|802778727|ref|XP_012091225.1| (PREDICTED: exopolygalacturonase-like [Jatropha curcas])

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 64/194 (32.99%), Postives = 95/194 (48.97%), Query Frame = 1 

Query: 7   VFNIIDFGATPDERTDSTV---------------------GRFLVLPVLLQGPCKGIIEL 66
           VF+I  +GA  DE+TD                        G FL+  V L+GPCKG +E+
Sbjct: 30  VFDITKYGAQADEKTDCCEAVMSAWKEACAAGSSKVLIPKGTFLMGIVKLEGPCKGAMEI 89

Query: 67  QVDGDLLASSHKAFAIGYSWFKFYGVNNLVIKGLGRFVGRGRTAWPYNTCKYGSCSRLPI 126
           ++ G L A +      G  W     V+ L I G G F G+G  AW               
Sbjct: 90  ELQGTLKAPADPKAIKGEGWITIDHVDQLTICGGGTFDGQGEAAW-------------KD 149

Query: 127 SVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNGS-GSSTSICQN 179
           + S+++I D+ F+NI GT++  +AV L CS   PC+ + L +I+LV++GS G + S C N
Sbjct: 150 APSKVKISDITFKNIKGTTTTPIAVQLSCSNGLPCEKVELADIDLVYSGSEGPAKSECTN 209

[Close]
BLAST of Cp4.1LG14g07590 vs. NCBI nr
Match: gi|449463753|ref|XP_004149596.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 1 

Query: 26  GRFLVLPVLLQGPCKGIIELQVDGDLLASSHKAFAIGYSWFKFYGVNNLVIKGLGRFVGR 85
           G+FLVLP+LLQGPC G+I +Q+DG+LLASS K FAIG  W     VNNL I GLGR  G 
Sbjct: 29  GKFLVLPLLLQGPCHGVIRIQLDGELLASSDKQFAIGDHWLSIENVNNLFIDGLGRLTGS 88

Query: 86  GRTAWPYNTCKYGSCSRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVL 145
           G +AWP N+         PIS+    +     +NI    S+     +  S     + +  
Sbjct: 89  GASAWPSNSL------NRPISMKFNNVNTASIKNISSFDSKFFHFAVHAS-----RDVTF 148

Query: 146 NNINLVFNGSGSST 160
           +N+ +V   +  +T
Sbjct: 149 DNVTVVAPANSPNT 151

[Close]
BLAST of Cp4.1LG14g07590 vs. NCBI nr
Match: gi|700200929|gb|KGN56062.1| (hypothetical protein Csa_3G063620 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 99  SCSRLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVFNGSGSS 158
           SC+   ++ S +QIKDV+++ I G+S+  +AV  +CSQV PCQGIVL +INL FNG G +
Sbjct: 166 SCAPNKMNKSMVQIKDVRYQGITGSSNTPVAVDFECSQVLPCQGIVLQDINLTFNGGGKT 225

Query: 159 TSICQNVEGSASRPLRPPSCL 180
           TSIC NV+GSAS    PPSCL
Sbjct: 226 TSICHNVKGSASGQQLPPSCL 246

[Close]
BLAST of Cp4.1LG14g07590 vs. NCBI nr
Match: gi|674249865|gb|KFK42630.1| (hypothetical protein AALP_AA1G020100 [Arabis alpina])

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 67/205 (32.68%), Postives = 95/205 (46.34%), Query Frame = 1 

Query: 7   VFNIIDFGATPDERTDS----------------------TVGRFLVLPVLLQGPCKGIIE 66
           VF+I  FGA  D  T+S                        G FL  PV+  GPC+  I 
Sbjct: 49  VFDITKFGAVGDGSTNSFKAFLNTWIKVCASPVPATLLVPKGEFLTGPVIFAGPCESKIT 108

Query: 67  LQVDGDLLASSHKAFAIGYS---WFKFYGVNNLVIKGLGRFVGRGRTAWPYNTCKYGSCS 126
           ++V G + A++      GY+   W  F  V+N+V+ G G F G+G   W  + C      
Sbjct: 109 VEVHGTVSATTS-----GYATPEWILFEHVDNVVLTGTGTFHGKGEKVWAADGCGKKLQC 168

Query: 127 RLPISVSRIQIKDVKFENIWGTSSEHLAVTLKCSQVFPCQGIVLNNINLVF---NGSGSS 176
            LP + SR+ I DV F+N+ GTS     V + CS+  PC+G+ + ++NL F   NG GS 
Sbjct: 169 NLPPTDSRVAISDVLFKNVRGTSITKDVVQIMCSKSLPCKGVNVVDVNLNFVGKNGGGSD 228

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g07590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR3_MAIZE4.3e-1227.27Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
PGLR2_MAIZE8.2e-1126.14Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR1_MAIZE1.4e-1026.14Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR1_ARATH2.4e-1029.19Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1[more]
PGLR_GOSBA2.4e-1030.37Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
BLAST of Cp4.1LG14g07590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L660_CUCSA8.2e-1856.79Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063620 PE=3 SV=1[more]
M0S3Y0_MUSAM2.4e-1732.93Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1[more]
A0A087HKH8_ARAAL2.4e-1732.68Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G020100 PE=3 SV=1[more]
M0S0F8_MUSAM6.9e-1732.93Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1[more]
M0UD85_MUSAM9.1e-1733.85Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1[more]
BLAST of Cp4.1LG14g07590 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33160.13.1e-1644.71 glycoside hydrolase family 28 protein / polygalacturonase (pectinase... [more]
AT1G78400.13.1e-1652.00 Pectin lyase-like superfamily protein[more]
AT2G15450.14.0e-1643.68 Pectin lyase-like superfamily protein[more]
AT1G17150.18.9e-1644.19 Pectin lyase-like superfamily protein[more]
AT2G15470.17.6e-1541.38 Pectin lyase-like superfamily protein[more]
BLAST of Cp4.1LG14g07590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|764522914|ref|XP_011457655.1|2.1e-1935.90PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca][more]
gi|802778727|ref|XP_012091225.1|3.7e-1932.99PREDICTED: exopolygalacturonase-like [Jatropha curcas][more]
gi|449463753|ref|XP_004149596.1|3.1e-1839.55PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|700200929|gb|KGN56062.1|1.2e-1756.79hypothetical protein Csa_3G063620 [Cucumis sativus][more]
gi|674249865|gb|KFK42630.1|3.4e-1732.68hypothetical protein AALP_AA1G020100 [Arabis alpina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g07590.1Cp4.1LG14g07590.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 107..169
score: 2.9
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 3..179
score: 7.77
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 100..178
score: 7.0E-18coord: 3..94
score: 2.2
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 108..179
score: 1.6
NoneNo IPR availablePANTHERPTHR31375:SF10GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN-RELATEDcoord: 108..179
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g07590Cucumber (Chinese Long) v3cpecucB0256
Cp4.1LG14g07590Wax gourdcpewgoB0276
Cp4.1LG14g07590Cucurbita pepo (Zucchini)cpecpeB240
Cp4.1LG14g07590Cucumber (Gy14) v1cgycpeB0026
Cp4.1LG14g07590Cucurbita maxima (Rimu)cmacpeB345
Cp4.1LG14g07590Cucurbita maxima (Rimu)cmacpeB469
Cp4.1LG14g07590Cucurbita maxima (Rimu)cmacpeB818
Cp4.1LG14g07590Cucurbita moschata (Rifu)cmocpeB308
Cp4.1LG14g07590Cucurbita moschata (Rifu)cmocpeB772
Cp4.1LG14g07590Wild cucumber (PI 183967)cpecpiB216
Cp4.1LG14g07590Cucumber (Chinese Long) v2cpecuB213
Cp4.1LG14g07590Bottle gourd (USVL1VR-Ls)cpelsiB179
Cp4.1LG14g07590Watermelon (Charleston Gray)cpewcgB194
Cp4.1LG14g07590Melon (DHL92) v3.5.1cpemeB185
Cp4.1LG14g07590Cucumber (Gy14) v2cgybcpeB326
Cp4.1LG14g07590Melon (DHL92) v3.6.1cpemedB232
Cp4.1LG14g07590Silver-seed gourdcarcpeB0683
Cp4.1LG14g07590Silver-seed gourdcarcpeB0833