Cp4.1LG14g06520 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g06520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMYB transcription factor
LocationCp4.1LG14 : 448709 .. 450418 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTACCGTTCGACACTGCTGCAACGTCGTTGCGAGATGATCTATTGAAGAGAGCTCGGAAACCTTACACCATCACCAAGTGCAGAGAGAGCTGGACTGAGCCTGAGCACGATAAGTTCCTCGAAGCTATTCAACTGTATGATCTTCTCTCTCCGATATATTTTCGAGCTTCTTTGTTCTTCTTCATCCTCCTGTTTTTCTCTTTTTTGTTGTGGATATTTTTTTAATTCGATTTAAAATTTTGCCCGTCTTGATAAGATTTCGTATCTCTGTGCGGTTTTATGCTCGTATCCGGCATCGTCTTTGATTTGTGGTTTCTGAATTCACGAGTGGAGGCCGCGCGATTTGTTTTCGGAGTGATTTTGGAGTATTTGACTGTTTGTTTTGTTTTCTTTCATCAGGAGAGGAATTCTGGTCTGTTTTTTGATTATTTGGAAGAAATGTCCGGAAGCATTTGAATTGTTGCTTTTGTGTTTGTTTCCGATCTAATCGTTCGTGTATCTTCTCTTTGATTGTATGCTTCAGATTTGATCGTGACTGGAAGAAGATTGAGGCCTTTGTAGGGTCGAAGACCGTCATTCAGGTAATGGACACACTCGTCTTACGTCCCATTTTTATCCTACGAATCTAATGAACAAATCTGGAATGTTTTCGTTCTTTTCTCGTTAGATATCGAGAAATAACGATGTTATTCGTCTTTCTGGAATTTTTGTTCTTCAATAGCGTTTCTAAGATTATAGATAAGTTCTGGAATTTAAAGATTATGAAGTAAATATAATATCCTGTTACGTTTGGTCAAAACAAATCATGCTCGAATTCTTCAAGCTTTGGCTCTTCTATTATAAGTAGTCTAAAGATGATGATTCTTATCAGATACGAAGTCACGCTCAGAAGTACTTCCTGAAGGTTGAGAAGAGTGGGACAGGCGAACACTTACCTCCTCCACGACNGGCGTGTTGGACGATGCACCGTCTTTATCGGTCACATCATGACACTTATCCAGCTCTCACATGTCTCGATAGGCACCACTTGCATATCGTGTTTCGAATGACTACGCATAGAGTCTCACAACCTACTATTTTCTTAGTACAATCGTGACATTCTCTCTCACTTAAACTAGTCATCATATTCAATATTTTTCGGAAACACAATTACCTAGTGGAATCTGAGACCATCGTGAAATGTTGTTTTTGTTGGTGGTGTTTGTGAAGGAAGAGATATTGGATGAGACTGACGAATACGTTGCTGTTCATAACAAGTAAGTGCTGATTTCTTTATAAAATTTTATTTTTACAAGTTTGTGGTAATAATGAATCATATTTGTGTAAAAAATACAGGCTGAAAGTGAATATGAGAGTAAGGAGATCAAAGTCAGAATCTCCAGGAGCAGCCCATCTGCGCTGGATATCACCAATGCCATCCCCACTGTCTTCATACCATCACTCTCCACTTTCTTCATCGTATAATCACTCACCAATGCCTCCGCGTATTCACTCCCCATTTACTCCACCGCCTCTCTCTTCTTCCCTTGGAAATTACTTGCACTCTTCTCCCACTCCATCTCCCGTTTCTCCAAATAAGGTTCTTTTTTCTTCCATCCTACATAAATGTTATGAGATTCGTGTATTTTAATCTTCGAATTTATATTTTATTCATAGGTTTCAAGGAAATCGTACGAAAAGCTGAAGCAGGCATATGGATCATAG

mRNA sequence

ATGGCGTTACCGTTCGACACTGCTGCAACGTCGTTGCGAGATGATCTATTGAAGAGAGCTCGGAAACCTTACACCATCACCAAGTGCAGAGAGAGCTGGACTGAGCCTGAGCACGATAAGTTCCTCGAAGCTATTCAACTATTTGATCGTGACTGGAAGAAGATTGAGGCCTTTGTAGGGTCGAAGACCGTCATTCAGGAAGAGATATTGGATGAGACTGACGAATACGTTGCTGTTCATAACAAGCTGAAAGTGAATATGAGAGTAAGGAGATCAAAGTCAGAATCTCCAGGAGCAGCCCATCTGCGCTGGATATCACCAATGCCATCCCCACTGTCTTCATACCATCACTCTCCACTTTCTTCATCGTATAATCACTCACCAATGCCTCCGCGTATTCACTCCCCATTTACTCCACCGCCTCTCTCTTCTTCCCTTGGAAATTACTTGCACTCTTCTCCCACTCCATCTCCCGTTTCTCCAAATAAGGTTTCAAGGAAATCGTACGAAAAGCTGAAGCAGGCATATGGATCATAG

Coding sequence (CDS)

ATGGCGTTACCGTTCGACACTGCTGCAACGTCGTTGCGAGATGATCTATTGAAGAGAGCTCGGAAACCTTACACCATCACCAAGTGCAGAGAGAGCTGGACTGAGCCTGAGCACGATAAGTTCCTCGAAGCTATTCAACTATTTGATCGTGACTGGAAGAAGATTGAGGCCTTTGTAGGGTCGAAGACCGTCATTCAGGAAGAGATATTGGATGAGACTGACGAATACGTTGCTGTTCATAACAAGCTGAAAGTGAATATGAGAGTAAGGAGATCAAAGTCAGAATCTCCAGGAGCAGCCCATCTGCGCTGGATATCACCAATGCCATCCCCACTGTCTTCATACCATCACTCTCCACTTTCTTCATCGTATAATCACTCACCAATGCCTCCGCGTATTCACTCCCCATTTACTCCACCGCCTCTCTCTTCTTCCCTTGGAAATTACTTGCACTCTTCTCCCACTCCATCTCCCGTTTCTCCAAATAAGGTTTCAAGGAAATCGTACGAAAAGCTGAAGCAGGCATATGGATCATAG

Protein sequence

MALPFDTAATSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQEEILDETDEYVAVHNKLKVNMRVRRSKSESPGAAHLRWISPMPSPLSSYHHSPLSSSYNHSPMPPRIHSPFTPPPLSSSLGNYLHSSPTPSPVSPNKVSRKSYEKLKQAYGS
Homology
[Close]
BLAST of Cp4.1LG14g06520 vs. Swiss-Prot
Match: RVE6_ARATH (Protein REVEILLE 6 OS=Arabidopsis thaliana GN=RVE6 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-21
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 10  TSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 67
           +S  +DL K+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAF+GSKTVIQ
Sbjct: 52  SSSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 108

[Close]
BLAST of Cp4.1LG14g06520 vs. Swiss-Prot
Match: RVE3_ARATH (Protein REVEILLE 3 OS=Arabidopsis thaliana GN=RVE3 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-18
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 11 SLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 67
          S  +D  K+ RKPYTITK RE+WTE EHDKFLEA+ LFDRDWKKI+AFVGSKTVIQ
Sbjct: 42 SFFEDPTKKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQ 97

[Close]
BLAST of Cp4.1LG14g06520 vs. Swiss-Prot
Match: RVE8_ARATH (Protein REVEILLE 8 OS=Arabidopsis thaliana GN=RVE8 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-18
Identity = 60/135 (44.44%), Postives = 76/135 (56.30%), Query Frame = 1 

Query: 4   PFDTAATSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKT 63
           P  T+  ++ +   K+ RKPYTITK RESWTE EHDKFLEA+QLFDRDWKKIE FVGSKT
Sbjct: 17  PPPTSTDAVAEGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKT 76

Query: 64  VIQEEILDETDEYVAVHNKLKVNMRVRRSKSESPGAAHLRWISPMPSPLSSYHHSPLSSS 123
           VIQ  I     +Y      LKV         ++   AH+    P P P     H     +
Sbjct: 77  VIQ--IRSHAQKYF-----LKV--------QKNGTLAHV----PPPRPKRKAAHPYPQKA 132

Query: 124 YNHSPMPPRIHSPFT 139
             ++ MP ++ + FT
Sbjct: 137 SKNAQMPLQVSTSFT 132

[Close]
BLAST of Cp4.1LG14g06520 vs. Swiss-Prot
Match: RVE5_ARATH (Protein REVEILLE 5 OS=Arabidopsis thaliana GN=RVE5 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 7  TAATSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 66
          T+  S  +D   + RKPYTI K RE+WT+ EHDKFLEA+ LFDRDWKKIEAFVGSKTV+Q
Sbjct: 36 TSTVSFSEDPTTKIRKPYTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQ 95

[Close]
BLAST of Cp4.1LG14g06520 vs. Swiss-Prot
Match: RVE4_ARATH (Protein REVEILLE 4 OS=Arabidopsis thaliana GN=RVE4 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-17
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 18 KRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 67
          K+ RK YTITK RESWTE EHDKFLEA+QLFDRDWKKIE FVGSKTVIQ
Sbjct: 36 KKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQ 84

[Close]
BLAST of Cp4.1LG14g06520 vs. TrEMBL
Match: A0A0A0L9X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183990 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 90/126 (71.43%), Postives = 99/126 (78.57%), Query Frame = 1 

Query: 64  VIQEEILDETDEYVAVHNKLKVNMRVRRSKSESPGAAHLRWISPMPSPLSSYHHSPLSSS 123
           ++QEEILDETDEYVAVHNKLKVNM VRRS SESPG   L+W+SP+ SPLSSYHHSPLSSS
Sbjct: 378 LLQEEILDETDEYVAVHNKLKVNMEVRRSTSESPGGPRLQWMSPVASPLSSYHHSPLSSS 437

Query: 124 YN-----HSPMPPRIHSPFTPPPLSSSLGNYLHSSPTPSPV-----SP-NKVSRKSYEKL 179
           YN     HSP+PP IHSPF PP LSSS  NY HSSPTP  V     SP +K+SRKSYEKL
Sbjct: 438 YNHSPILHSPIPPHIHSPFNPPSLSSSPRNYFHSSPTPCSVPSLSASPSHKISRKSYEKL 497

[Close]
BLAST of Cp4.1LG14g06520 vs. TrEMBL
Match: A0A0A0L8T4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183960 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.4e-27
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 1 

Query: 1  MALPFDTAATSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60
          MALPF+T  TS RDDL KRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG
Sbjct: 1  MALPFETVITSSRDDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60

Query: 61 SKTVIQ 67
          SKTVIQ
Sbjct: 61 SKTVIQ 66

[Close]
BLAST of Cp4.1LG14g06520 vs. TrEMBL
Match: A0A0B2PUC4_GLYSO (Transcription factor ASG4 OS=Glycine soja GN=glysoja_042194 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 3  LPFDTAATSLRD---DLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFV 62
          LPF  AAT+  D   D  K+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAFV
Sbjct: 25 LPFAAAATATADSFEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFV 84

Query: 63 GSKTVIQ 67
          GSKTVIQ
Sbjct: 85 GSKTVIQ 91

[Close]
BLAST of Cp4.1LG14g06520 vs. TrEMBL
Match: Q0PJE6_SOYBN (MYB transcription factor MYB148 (Fragment) OS=Glycine max GN=MYB148 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 3  LPFDTAATSLRD---DLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFV 62
          LPF  AAT+  D   D  K+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAFV
Sbjct: 6  LPFAAAATATADSFEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFV 65

Query: 63 GSKTVIQ 67
          GSKTVIQ
Sbjct: 66 GSKTVIQ 72

[Close]
BLAST of Cp4.1LG14g06520 vs. TrEMBL
Match: I1NGY2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G162800 PE=4 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 3  LPFDTAATSLRD---DLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFV 62
          LPF  AAT+  D   D  K+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAFV
Sbjct: 25 LPFAAAATATADSFEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFV 84

Query: 63 GSKTVIQ 67
          GSKTVIQ
Sbjct: 85 GSKTVIQ 91

[Close]
BLAST of Cp4.1LG14g06520 vs. TAIR10
Match: AT5G52660.2 (AT5G52660.2 Homeodomain-like superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-22
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 10  TSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 67
           +S  +DL K+ RKPYTITK RESWTEPEHDKFLEA+QLFDRDWKKIEAF+GSKTVIQ
Sbjct: 52  SSSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 108

[Close]
BLAST of Cp4.1LG14g06520 vs. TAIR10
Match: AT1G01520.1 (AT1G01520.1 Homeodomain-like superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 11 SLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 67
          S  +D  K+ RKPYTITK RE+WTE EHDKFLEA+ LFDRDWKKI+AFVGSKTVIQ
Sbjct: 42 SFFEDPTKKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQ 97

[Close]
BLAST of Cp4.1LG14g06520 vs. TAIR10
Match: AT3G09600.1 (AT3G09600.1 Homeodomain-like superfamily protein)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-19
Identity = 60/135 (44.44%), Postives = 76/135 (56.30%), Query Frame = 1 

Query: 4   PFDTAATSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKT 63
           P  T+  ++ +   K+ RKPYTITK RESWTE EHDKFLEA+QLFDRDWKKIE FVGSKT
Sbjct: 17  PPPTSTDAVAEGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKT 76

Query: 64  VIQEEILDETDEYVAVHNKLKVNMRVRRSKSESPGAAHLRWISPMPSPLSSYHHSPLSSS 123
           VIQ  I     +Y      LKV         ++   AH+    P P P     H     +
Sbjct: 77  VIQ--IRSHAQKYF-----LKV--------QKNGTLAHV----PPPRPKRKAAHPYPQKA 132

Query: 124 YNHSPMPPRIHSPFT 139
             ++ MP ++ + FT
Sbjct: 137 SKNAQMPLQVSTSFT 132

[Close]
BLAST of Cp4.1LG14g06520 vs. TAIR10
Match: AT4G01280.2 (AT4G01280.2 Homeodomain-like superfamily protein)

HSP 1 Score: 91.3 bits (225), Expect = 6.6e-19
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 7  TAATSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 66
          T+  S  +D   + RKPYTI K RE+WT+ EHDKFLEA+ LFDRDWKKIEAFVGSKTV+Q
Sbjct: 36 TSTVSFSEDPTTKIRKPYTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQ 95

[Close]
BLAST of Cp4.1LG14g06520 vs. TAIR10
Match: AT5G02840.1 (AT5G02840.1 LHY/CCA1-like 1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-18
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 18 KRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKTVIQ 67
          K+ RK YTITK RESWTE EHDKFLEA+QLFDRDWKKIE FVGSKTVIQ
Sbjct: 36 KKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQ 84

[Close]
BLAST of Cp4.1LG14g06520 vs. NCBI nr
Match: gi|659077642|ref|XP_008439309.1| (PREDICTED: DUF21 domain-containing protein At5g52790 isoform X1 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-37
Identity = 89/122 (72.95%), Postives = 97/122 (79.51%), Query Frame = 1 

Query: 64  VIQEEILDETDEYVAVHNKLKVNMRVRRSKSESPGAAHLRWISPMPSPLSSYHHSPLSSS 123
           ++QEEILDETDEYVAVHNKLKVNM+VRRS SESPG  HL+WISP+ SPLSSYHHSPLSSS
Sbjct: 378 LLQEEILDETDEYVAVHNKLKVNMKVRRSTSESPGGPHLQWISPVASPLSSYHHSPLSSS 437

Query: 124 YN-----HSPMPPRIHSPFTPPPLSSSLGNYLHSSPTPSPV-------SPNKVSRKSYEK 174
           YN     HSP+PP IHSPF PP LSSS  NY HSSPTP  V       S +K+SRKSYEK
Sbjct: 438 YNHSPILHSPIPPHIHSPFNPPSLSSSPRNYFHSSPTPCSVPSLSASPSSHKISRKSYEK 497

[Close]
BLAST of Cp4.1LG14g06520 vs. NCBI nr
Match: gi|700202284|gb|KGN57417.1| (hypothetical protein Csa_3G183990 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 90/126 (71.43%), Postives = 99/126 (78.57%), Query Frame = 1 

Query: 64  VIQEEILDETDEYVAVHNKLKVNMRVRRSKSESPGAAHLRWISPMPSPLSSYHHSPLSSS 123
           ++QEEILDETDEYVAVHNKLKVNM VRRS SESPG   L+W+SP+ SPLSSYHHSPLSSS
Sbjct: 378 LLQEEILDETDEYVAVHNKLKVNMEVRRSTSESPGGPRLQWMSPVASPLSSYHHSPLSSS 437

Query: 124 YN-----HSPMPPRIHSPFTPPPLSSSLGNYLHSSPTPSPV-----SP-NKVSRKSYEKL 179
           YN     HSP+PP IHSPF PP LSSS  NY HSSPTP  V     SP +K+SRKSYEKL
Sbjct: 438 YNHSPILHSPIPPHIHSPFNPPSLSSSPRNYFHSSPTPCSVPSLSASPSHKISRKSYEKL 497

[Close]
BLAST of Cp4.1LG14g06520 vs. NCBI nr
Match: gi|778688559|ref|XP_011652777.1| (PREDICTED: DUF21 domain-containing protein At5g52790 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 6.4e-32
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 64  VIQEEILDETDEYVAVHNKLKVNMRVRRSKSESPGAAHLRWISPMPSPLSSYHHSPLSSS 123
           ++QEEILDETDEYVAVHNKLKVNM VRRS SESPG   L+W+SP+ SPLSSYHHSPLSSS
Sbjct: 389 LLQEEILDETDEYVAVHNKLKVNMEVRRSTSESPGGPRLQWMSPVASPLSSYHHSPLSSS 448

Query: 124 YN-----HSPMPPRIHSPFTPPPLSSSLGNYLHSSPTPSPV 160
           YN     HSP+PP IHSPF PP LSSS  NY HSSPTP  V
Sbjct: 449 YNHSPILHSPIPPHIHSPFNPPSLSSSPRNYFHSSPTPCSV 489

[Close]
BLAST of Cp4.1LG14g06520 vs. NCBI nr
Match: gi|449445999|ref|XP_004140759.1| (PREDICTED: protein REVEILLE 6 isoform X2 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 1 

Query: 1  MALPFDTAATSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60
          MALPF+T  TS RDDL KRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG
Sbjct: 1  MALPFETVITSSRDDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60

Query: 61 SKTVIQ 67
          SKTVIQ
Sbjct: 61 SKTVIQ 66

[Close]
BLAST of Cp4.1LG14g06520 vs. NCBI nr
Match: gi|778679712|ref|XP_011651186.1| (PREDICTED: protein REVEILLE 6 isoform X3 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 1 

Query: 1  MALPFDTAATSLRDDLLKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60
          MALPF+T  TS RDDL KRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG
Sbjct: 1  MALPFETVITSSRDDLSKRARKPYTITKCRESWTEPEHDKFLEAIQLFDRDWKKIEAFVG 60

Query: 61 SKTVIQ 67
          SKTVIQ
Sbjct: 61 SKTVIQ 66

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g06520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RVE6_ARATH3.0e-2182.46Protein REVEILLE 6 OS=Arabidopsis thaliana GN=RVE6 PE=2 SV=1[more]
RVE3_ARATH3.1e-1876.79Protein REVEILLE 3 OS=Arabidopsis thaliana GN=RVE3 PE=2 SV=1[more]
RVE8_ARATH6.9e-1844.44Protein REVEILLE 8 OS=Arabidopsis thaliana GN=RVE8 PE=2 SV=1[more]
RVE5_ARATH1.2e-1768.33Protein REVEILLE 5 OS=Arabidopsis thaliana GN=RVE5 PE=2 SV=1[more]
RVE4_ARATH2.6e-1785.71Protein REVEILLE 4 OS=Arabidopsis thaliana GN=RVE4 PE=1 SV=1[more]
BLAST of Cp4.1LG14g06520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9X3_CUCSA1.0e-3671.43Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183990 PE=4 SV=1[more]
A0A0A0L8T4_CUCSA7.4e-2792.42Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183960 PE=4 SV=1[more]
A0A0B2PUC4_GLYSO2.3e-2079.10Transcription factor ASG4 OS=Glycine soja GN=glysoja_042194 PE=4 SV=1[more]
Q0PJE6_SOYBN2.3e-2079.10MYB transcription factor MYB148 (Fragment) OS=Glycine max GN=MYB148 PE=2 SV=1[more]
I1NGY2_SOYBN2.3e-2079.10Uncharacterized protein OS=Glycine max GN=GLYMA_20G162800 PE=4 SV=2[more]
BLAST of Cp4.1LG14g06520 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52660.21.7e-2282.46 Homeodomain-like superfamily protein[more]
AT1G01520.11.7e-1976.79 Homeodomain-like superfamily protein[more]
AT3G09600.13.9e-1944.44 Homeodomain-like superfamily protein[more]
AT4G01280.26.6e-1968.33 Homeodomain-like superfamily protein[more]
AT5G02840.11.5e-1885.71 LHY/CCA1-like 1[more]
BLAST of Cp4.1LG14g06520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077642|ref|XP_008439309.1|2.3e-3772.95PREDICTED: DUF21 domain-containing protein At5g52790 isoform X1 [Cucumis melo][more]
gi|700202284|gb|KGN57417.1|1.5e-3671.43hypothetical protein Csa_3G183990 [Cucumis sativus][more]
gi|778688559|ref|XP_011652777.1|6.4e-3275.25PREDICTED: DUF21 domain-containing protein At5g52790 [Cucumis sativus][more]
gi|449445999|ref|XP_004140759.1|1.1e-2692.42PREDICTED: protein REVEILLE 6 isoform X2 [Cucumis sativus][more]
gi|778679712|ref|XP_011651186.1|1.1e-2692.42PREDICTED: protein REVEILLE 6 isoform X3 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR006447Myb_dom_plants
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0042752 regulation of circadian rhythm
biological_process GO:0009737 response to abscisic acid
biological_process GO:0046686 response to cadmium ion
biological_process GO:0009723 response to ethylene
biological_process GO:0009739 response to gibberellin
biological_process GO:0009753 response to jasmonic acid
biological_process GO:0009751 response to salicylic acid
biological_process GO:0009651 response to salt stress
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g06520.1Cp4.1LG14g06520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 30..64
score: 2.
IPR006447Myb domain, plantsTIGRFAMsTIGR01557TIGR01557coord: 28..65
score: 2.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 30..63
score: 1.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 15..66
score: 4.64
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 11..66
score: 5.8
NoneNo IPR availablePANTHERPTHR12802:SF48SUBFAMILY NOT NAMEDcoord: 11..66
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g06520MELO3C006934.2Melon (DHL92) v3.6.1cpemedB226
Cp4.1LG14g06520MELO3C005840.2Melon (DHL92) v3.6.1cpemedB215
Cp4.1LG14g06520MELO3C006086.2Melon (DHL92) v3.6.1cpemedB225
Cp4.1LG14g06520CsaV3_5G001040Cucumber (Chinese Long) v3cpecucB0275
Cp4.1LG14g06520CsaV3_3G008670Cucumber (Chinese Long) v3cpecucB0252
Cp4.1LG14g06520BhiUN557G21Wax gourdcpewgoB0286
Cp4.1LG14g06520CsGy5G000920Cucumber (Gy14) v2cgybcpeB617
Cp4.1LG14g06520CsGy3G017350Cucumber (Gy14) v2cgybcpeB327
Cp4.1LG14g06520CsGy3G008640Cucumber (Gy14) v2cgybcpeB321
Cp4.1LG14g06520Carg08398Silver-seed gourdcarcpeB0998
Cp4.1LG14g06520Carg15106Silver-seed gourdcarcpeB1376
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g06520Cp4.1LG09g00710Cucurbita pepo (Zucchini)cpecpeB023
Cp4.1LG14g06520Cp4.1LG05g06290Cucurbita pepo (Zucchini)cpecpeB245
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g06520Cucumber (Chinese Long) v3cpecucB0257
Cp4.1LG14g06520Cucumber (Chinese Long) v3cpecucB0278
Cp4.1LG14g06520Cucurbita pepo (Zucchini)cpecpeB197
Cp4.1LG14g06520Cucurbita pepo (Zucchini)cpecpeB232
Cp4.1LG14g06520Cucurbita pepo (Zucchini)cpecpeB242
Cp4.1LG14g06520Cucurbita pepo (Zucchini)cpecpeB254
Cp4.1LG14g06520Cucumber (Gy14) v1cgycpeB0241
Cp4.1LG14g06520Cucurbita maxima (Rimu)cmacpeB307
Cp4.1LG14g06520Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g06520Cucurbita maxima (Rimu)cmacpeB425
Cp4.1LG14g06520Cucurbita maxima (Rimu)cmacpeB608
Cp4.1LG14g06520Cucurbita moschata (Rifu)cmocpeB270
Cp4.1LG14g06520Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g06520Cucurbita moschata (Rifu)cmocpeB386
Cp4.1LG14g06520Cucurbita moschata (Rifu)cmocpeB557
Cp4.1LG14g06520Wild cucumber (PI 183967)cpecpiB217
Cp4.1LG14g06520Wild cucumber (PI 183967)cpecpiB227
Cp4.1LG14g06520Cucumber (Chinese Long) v2cpecuB214
Cp4.1LG14g06520Cucumber (Chinese Long) v2cpecuB225
Cp4.1LG14g06520Bottle gourd (USVL1VR-Ls)cpelsiB163
Cp4.1LG14g06520Bottle gourd (USVL1VR-Ls)cpelsiB172
Cp4.1LG14g06520Watermelon (Charleston Gray)cpewcgB199
Cp4.1LG14g06520Watermelon (Charleston Gray)cpewcgB207
Cp4.1LG14g06520Watermelon (97103) v1cpewmB227
Cp4.1LG14g06520Watermelon (97103) v1cpewmB229
Cp4.1LG14g06520Melon (DHL92) v3.5.1cpemeB179
Cp4.1LG14g06520Melon (DHL92) v3.5.1cpemeB190
Cp4.1LG14g06520Melon (DHL92) v3.6.1cpemedB233
Cp4.1LG14g06520Silver-seed gourdcarcpeB0690
Cp4.1LG14g06520Silver-seed gourdcarcpeB1039