Cp4.1LG14g05780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g05780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGlucose and ribitol dehydrogenase
LocationCp4.1LG14 : 832875 .. 833159 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTCTCGGCTCTGTTCCTACTCCATTGGAGCTTCTTCTTCTGGTTTCTTCTTCGGTGGTTGTCGCAGTGCTGAGTTTAGAAATAGTTTCATTCCGCGCAGTTGGGCCATCGGCGGTGTTGGGTTAGTGACAAACATGGCATCTGAAGGCCGCCGACAGTTTCCTCCACAGAAGCAACAAGCTCAGCCTGGCAAAGAGCACGTCATGGACCCAACTCCACAGTTTACCAGCCCAGATTACAGGCCTGCCAATAAGCTTCAGGCACCTTTCTTTTCAATCTAA

mRNA sequence

ATGCTTTCTCGGCTCTGTTCCTACTCCATTGGAGCTTCTTCTTCTGGTTTCTTCTTCGGTGGTTGTCGCAGTGCTGAGTTTAGAAATAGTTTCATTCCGCGCAGTTGGGCCATCGGCGGTGTTGGGTTAGTGACAAACATGGCATCTGAAGGCCGCCGACAGTTTCCTCCACAGAAGCAACAAGCTCAGCCTGGCAAAGAGCACGTCATGGACCCAACTCCACAGTTTACCAGCCCAGATTACAGGCCTGCCAATAAGCTTCAGGCACCTTTCTTTTCAATCTAA

Coding sequence (CDS)

ATGCTTTCTCGGCTCTGTTCCTACTCCATTGGAGCTTCTTCTTCTGGTTTCTTCTTCGGTGGTTGTCGCAGTGCTGAGTTTAGAAATAGTTTCATTCCGCGCAGTTGGGCCATCGGCGGTGTTGGGTTAGTGACAAACATGGCATCTGAAGGCCGCCGACAGTTTCCTCCACAGAAGCAACAAGCTCAGCCTGGCAAAGAGCACGTCATGGACCCAACTCCACAGTTTACCAGCCCAGATTACAGGCCTGCCAATAAGCTTCAGGCACCTTTCTTTTCAATCTAA

Protein sequence

MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQAPFFSI
Homology
[Close]
BLAST of Cp4.1LG14g05780 vs. Swiss-Prot
Match: GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-10
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 

Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          MAS G  QFPPQKQ++QPGKEH+MDP+PQ  SP Y+PANKLQ
Sbjct: 1  MASGG--QFPPQKQESQPGKEHLMDPSPQHASPHYKPANKLQ 40

[Close]
BLAST of Cp4.1LG14g05780 vs. Swiss-Prot
Match: GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-07
Identity = 22/33 (66.67%), Postives = 30/33 (90.91%), Query Frame = 1 

Query: 55 FPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKL 88
          FPPQKQ+ QPG +HVM+PTP+F+S +Y+P+NKL
Sbjct: 5  FPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]
BLAST of Cp4.1LG14g05780 vs. Swiss-Prot
Match: GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.2e-06
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 

Query: 53 RQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          +QFPPQ Q+ QPGKEH MDP P+     Y+PANKL+
Sbjct: 4  QQFPPQNQETQPGKEHAMDPRPEAIIQSYKPANKLK 39

[Close]
BLAST of Cp4.1LG14g05780 vs. Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.1e-06
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 58 QKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          QKQ AQPGKEHVM+ +PQF+S DY+P+NKL+
Sbjct: 6  QKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 36

[Close]
BLAST of Cp4.1LG14g05780 vs. TrEMBL
Match: A0A0A0L9H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176290 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.4e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQAPFFS 94
          MASEG+++FPPQKQQAQPGK+H MDPTPQFTSPDY PANKLQA  FS
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQALNFS 47

[Close]
BLAST of Cp4.1LG14g05780 vs. TrEMBL
Match: M5WC58_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009407mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-11
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 

Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          MAS G++QFPPQKQ+ QPGKEH MDPTPQFT+PDY+P+NKLQ
Sbjct: 1  MASGGKQQFPPQKQETQPGKEHAMDPTPQFTNPDYKPSNKLQ 42

[Close]
BLAST of Cp4.1LG14g05780 vs. TrEMBL
Match: V4TAA6_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003201mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.7e-11
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 1 

Query: 43 LVTNMASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          ++ NMAS G +QFPPQKQ+AQPGKEHVM+PTPQFTS DY+P+NKL+
Sbjct: 9  IMRNMAS-GNQQFPPQKQEAQPGKEHVMEPTPQFTSHDYKPSNKLR 53

[Close]
BLAST of Cp4.1LG14g05780 vs. TrEMBL
Match: A0A061FA32_THECC (NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_026573 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 

Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          MAS G++QFPPQKQ  QPGKEHVM+P PQFTSPDY+P+NK Q
Sbjct: 1  MASGGQQQFPPQKQSTQPGKEHVMNPIPQFTSPDYKPSNKFQ 42

[Close]
BLAST of Cp4.1LG14g05780 vs. TrEMBL
Match: F6HYY9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00340 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-10
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1 

Query: 43 LVTNMASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          L   MAS G +QFPPQ+Q+ QPGKEHVM PTPQF +PDYRPA+KLQ
Sbjct: 44 LQRTMASGGGQQFPPQRQERQPGKEHVMTPTPQFINPDYRPAHKLQ 89

[Close]
BLAST of Cp4.1LG14g05780 vs. TAIR10
Match: AT3G05260.1 (AT3G05260.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 22/33 (66.67%), Postives = 30/33 (90.91%), Query Frame = 1 

Query: 55 FPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKL 88
          FPPQKQ+ QPG +HVM+PTP+F+S +Y+P+NKL
Sbjct: 5  FPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]
BLAST of Cp4.1LG14g05780 vs. TAIR10
Match: AT1G54870.1 (AT1G54870.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.0e-07
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 58 QKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          QKQ AQPGKEHVM+ +PQF+S DY+P+NKL+
Sbjct: 53 QKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 83

[Close]
BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: gi|659077245|ref|XP_008439102.1| (PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 53/100 (53.00%), Postives = 59/100 (59.00%), Query Frame = 1 

Query: 1  MLSRLCSYS----------IGASSSGFFFGGCRSAEFRNSFIP--RSWAIGGVGLVTNMA 60
          ++SR CSY           +     G  F GC      NS I   R W       V +MA
Sbjct: 4  LISRFCSYPNIRPLVIPCCLLGGFCGADFTGCSCRSNTNSSIVSRRCW-------VRSMA 63

Query: 61 SEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          SEG++QFPPQKQQAQPGKEH MDPTPQFTSPDY PANKLQ
Sbjct: 64 SEGQQQFPPQKQQAQPGKEHAMDPTPQFTSPDYNPANKLQ 96

[Close]
BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: gi|700202149|gb|KGN57282.1| (hypothetical protein Csa_3G176290 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQAPFFS 94
          MASEG+++FPPQKQQAQPGK+H MDPTPQFTSPDY PANKLQA  FS
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQALNFS 47

[Close]
BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: gi|449460806|ref|XP_004148135.1| (PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          MASEG+++FPPQKQQAQPGK+H MDPTPQFTSPDY PANKLQ
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQ 42

[Close]
BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: gi|645222217|ref|XP_008246486.1| (PREDICTED: glucose and ribitol dehydrogenase-like [Prunus mume])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 

Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          MAS G++QFPPQKQ+ QPGKEH MDPTPQFT+PDY+P+NKLQ
Sbjct: 1  MASGGKQQFPPQKQETQPGKEHAMDPTPQFTNPDYKPSNKLQ 42

[Close]
BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: gi|694445999|ref|XP_009349395.1| (PREDICTED: glucose and ribitol dehydrogenase homolog 1 [Pyrus x bretschneideri])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1 

Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          MAS G++QFPPQKQ AQPGKEH MDPTPQFT+PDY+P+NKLQ
Sbjct: 1  MASGGKQQFPPQKQGAQPGKEHAMDPTPQFTNPDYKPSNKLQ 42

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g05780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GRDH_DAUCA2.8e-1073.81Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1[more]
GRDH2_ARATH3.8e-0766.67Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana GN=At3g05260... [more]
GRDH_ORYSJ3.2e-0661.11Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os0... [more]
GRDH1_ARATH7.1e-0670.97Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870... [more]
BLAST of Cp4.1LG14g05780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9H4_CUCSA8.4e-1482.98Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176290 PE=4 SV=1[more]
M5WC58_PRUPE1.0e-1178.57Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009407mg PE=4 SV=1[more]
V4TAA6_9ROSI8.7e-1173.91Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003201mg PE=... [more]
A0A061FA32_THECC1.9e-1076.19NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_02657... [more]
F6HYY9_VITVI3.3e-1071.74Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00340 PE=4 SV=... [more]
BLAST of Cp4.1LG14g05780 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05260.12.1e-0866.67 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT1G54870.14.0e-0770.97 NAD(P)-binding Rossmann-fold superfamily protein[more]
BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077245|ref|XP_008439102.1|3.7e-1553.00PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis melo][more]
gi|700202149|gb|KGN57282.1|1.2e-1382.98hypothetical protein Csa_3G176290 [Cucumis sativus][more]
gi|449460806|ref|XP_004148135.1|1.0e-1285.71PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis sativus][more]
gi|645222217|ref|XP_008246486.1|1.5e-1178.57PREDICTED: glucose and ribitol dehydrogenase-like [Prunus mume][more]
gi|694445999|ref|XP_009349395.1|1.5e-1180.95PREDICTED: glucose and ribitol dehydrogenase homolog 1 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g05780.1Cp4.1LG14g05780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g05780MELO3C006823.2Melon (DHL92) v3.6.1cpemedB233
Cp4.1LG14g05780CsaV3_3G016250Cucumber (Chinese Long) v3cpecucB0257
Cp4.1LG14g05780CsGy3G016130Cucumber (Gy14) v2cgybcpeB327
Cp4.1LG14g05780Carg16730Silver-seed gourdcarcpeB1215
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g05780Wild cucumber (PI 183967)cpecpiB217
Cp4.1LG14g05780Cucumber (Chinese Long) v2cpecuB214
Cp4.1LG14g05780Bottle gourd (USVL1VR-Ls)cpelsiB172
Cp4.1LG14g05780Watermelon (Charleston Gray)cpewcgB207
Cp4.1LG14g05780Watermelon (97103) v1cpewmB227
Cp4.1LG14g05780Melon (DHL92) v3.5.1cpemeB190
Cp4.1LG14g05780Silver-seed gourdcarcpeB0523
Cp4.1LG14g05780Silver-seed gourdcarcpeB0998
Cp4.1LG14g05780Silver-seed gourdcarcpeB1272
Cp4.1LG14g05780Wax gourdcpewgoB0298
Cp4.1LG14g05780Cucurbita pepo (Zucchini)cpecpeB232
Cp4.1LG14g05780Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG14g05780Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG14g05780Cucumber (Gy14) v1cgycpeB0673
Cp4.1LG14g05780Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g05780Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g05780Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g05780Cucurbita moschata (Rifu)cmocpeB668