Cp4.1LG14g04960 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g04960
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	MADS-box transcription factor family protein
Location	Cp4.1LG14 : 1323554 .. 1327231 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGGTTTTTTTTTTTTTTTTTCGTAGATCGAGCAAATTTATACGGTTTATATGTTCGTAAATTCATCGTTTTTCATGCAAATTACAGAAAATTTGGATCTGGGTCGAGTTGGATTGAGTTGAATTATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGGTAATTTTCTCTCTCTCTCTCTCTCTAAAAATTTACTGTTTTTTTGTTTATTTTAATGAATTTGTTCTTGATTTTNTAAATCAAATCCTAATTTCGTCGGCCCCTCGGTTTCTAGGGTTCTTTAATTCAATCCCCCATTTCCCAAATTGCACTCCCCTGATTGATCCCACCTTTTTTTTCTTTTTCGTTGCTTTTGTTTTTTTGTTTTTTTCTTTTTTTTTTTTAGTTAAAGATGTGATTTTTATGGTTTGAATTATTGTAAAAAACATTTATTTATTAGTAAAATGAATTTAATTACTTTTTTTTTCAATATAATTCTTTATTTTTTGATTTTATTAAGGAAATAATGTTTAAATTTATATGGGAAAAAATGGTATTTTGAAATGATCTGCAGACACATGACATCATAAGTGACATGTTAATGTCTTAAATTTTGTTCCAAAAAAACATGAAAATTGTTTGCAACTTGTCCAAGAATCTCTCTCTCTCATAATGTTTGGTTTTCTCTCCCTCTAATTATGGGGTTTGTCTGTACTAATTTGTAAATATCAAAAGTTTCTATGTAAAGAAAAAATATATATATATCTTTTGAAATTGTACGGAAAATTATTTATATAACCAAAACTGTATCGGTTCAAGTTCACTGTTAGTAGATATTGTCTATTTTAGTCCGTTAGTATCGTTATCAGTCTCTCATTTTTAAAACGAGTCTACTAAGAAGAGGTTGTCACACCCTTATATGTAATGTTTTATTTCGCTCTCCAACTAATGTGGATCTCGGATGTTATGAATAACCTTAATTCTTACACAGTCGTTGTCATATCATTTTCCGTCTTATTTAATCGAATTCTCGAGAAATATTTTTTAAAATAATTTCAAAGTTCAAAGGAAAAAATGAAAATATTTTTAGCTCGTTTACAAAGGTAACCGGTTAGGTGGACTTTGACTTTTTAAACGCTACGTTGGACCGAGTGAAGAATGAAAAACGTCCGCTAACACCTTTTAAAAGGGATAAAATCTTTTTTAGATCAGCAGAAATCTCTCTCTAGTAGACGCATTTTAAAACAGTGAGGCGGAGGGCCAAAGTGAAAATATCTACCAGTAGTGGCTTTTAAGCTGTTACAAATTTGAACTCCGACCTTAGAAAAGGAGTATGTACCAATTATCGTTGAGTTATATTATATAGTTTTATCATATTCTCGAAAAATGTTTTTTTATTGCATGAAGCATGCACGAGTTACTTGGAAGACATAATAAGCTACCAGAGGTGAATAACTTTTGCCAACCTCTATCTCAGGTGAGTTCAAATTCGAAACTCCGACCTTTTGATCGATGATATATATATATATAGTCATACCCATATGCTTAGGTTGGCACCGTAAGACGGTTGTTGCTTCGGTTAATCGTTTTTAGGGTTTATCTAGCAGATGGAAAAGAGTGTGTGTGCTAATTTGAGAGAGGAATTTGCAGCCAAAAACAAAGAACTTAGGTAACATTACTAAAATCTTTGTAAATTATAAGGAAAAAAGAGTCTGATTTTGTGTTAAAACTATGAACAAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAGAAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCTTAGAGACAAAGGTTCGTAATTCTTAACAAGTTTTATTCGATAATTAAGCTTATGATCATCAAATTACGTTATAATTCGGAGATTTTGTGTGTTGTTCATGCAGGATGAAAAGTTTCTAAAAGAGATCGATGCTGTTAAGGAGAAGGTCGATAATCGATTTTTGAAAATTAAGCTTATAATCACTATTCTACGTAATAGAACAGCTTCCGAACTTTGTTATCTACTTTTTTTTACAAATATAGTTCGAATTTGGCTAAGAATTCAAGTGTTTACATGATTTTCAAGAACAAAATGGATTATCGAAAAGGGTCTTAAATATTATCGAACACGAACGATAAAAATGCGAACCCGCTTCAAATAATACATGAATATTGATTGCAGGAAGCTTTGCTGATGAAAGAGAATCAGAGACTGAGGAATCGAGTGAGAGCTTTGAATAGAGATGAGCAAGAACAGCAAGCAGTGGGTGTTGGTGGGAGCTCCTTGGGCTCAAAGTCAATCACTAGCAATAGCAGCTCCTCACCAAACCCTAGTTCTCAAGATTGTGATGATATTTCTCTCAAATTGGGGTTAGTAGTTTTCTTACATGCACTATATAAAAGGCCTTTGAATCCCGTTTTTTTCGGAGATTAAAAGACGATAGATGAAAGTTAAGGGTCGATTTGAAATGATTGTTTAAGTGTTTGAGAATGGGGTTAGCGTTAAGAAAGAGATTTTTAGTTCATGGAAATAAGACGTTTCAGATAAGCCCTGAGATAGGTTCATTGGTGGTCGAACATTTCTTTAGAAATGGTTACTTAAAGATCTCTTTAGAGGGAAGACTATCTCCACATACCAACATAGGTCATTTTAGTATGTTTTGTCGTCATTTATATGTTTTTTAGACAAATATGAGTCATTTTAGTATGTTTTATCCTCATTCACATGTTTTTTAGACTGATACAAGTCATTTTAGTATATTTTGTTCTCATTTACATGATTTTTAGACAAACACATTTACATGATTAAGCATCATTTTAGTATAGAAAAATTCCTAGAATGTCGCTCAACATAGAATTGCTCCAGTCAAAGCATGTTTAATTTTAGAGTTTTTATGGTTGAGCCATCAAAAAAAGGGAGGAAAATACACCTTCTTGGTAAAGACAGTAACTTTCAATTTTTTAAGTCTGTTTTAGCGCTCTCATTTGGATCTCGATTCATTCATATGCCTGTCTTTTACTCGGGTGTCAAATTTGAAATAACTATACCAAATAACAGTTCAAAATGTTCTAGAAAGGTAGCTAAACAACTTTCAAAAGTACTATAACCATTCAAACAAAGTTAGTTTCTTGCAGAGAAAAAGGATCTGTGTGTACAAAGAGATGACAATTAATATATGTTTGCCTCTATATGCAGTCTTTGAAGGCTCAAAGTATGCGATTCTCTGCAGCAGCTTGGCAATGCAAGCTCAGCCTTCTCTAATGGAGCTTTTACTAATCACTGGACTGCCAAAGCCACTCCTATTTGCATACAGATAATAAGGATGTGAAAAGGCCAATTCATTCAATATCATATCATGTTTTCAAAGCAGAAATGAGTTACATACATGAATATTGTTTCTGCATACCAATTGATCAAGAGTTTATTAAACTTTCAAAGGGAGTTTTATAAAGAAAATGACACTTCTCAGACCAAGTAAACGAACCTGCTTGCCTGCCTGCTGCCCTTTGTAGCATCTTGA

mRNA sequence

TTAGGGTTTTTTTTTTTTTTTTTCGTAGATCGAGCAAATTTATACGGTTTATATGTTCGTAAATTCATCGTTTTTCATGCAAATTACAGAAAATTTGGATCTGGGTCGAGTTGGATTGAGTTGAATTATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGCATGCACGAGTTACTTGGAAGACATAATAAGCTACCAGAGGTGAATAACTTTTGCCAACCTCTATCTCAGATGGAAAAGAGTGTGTGTGCTAATTTGAGAGAGGAATTTGCAGCCAAAAACAAAGAACTTAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAGAAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCTTAGAGACAAAGGAAGCTTTGCTGATGAAAGAGAATCAGAGACTGAGGAATCGAGTGAGAGCTTTGAATAGAGATGAGCAAGAACAGCAAGCAGTGGGTGTTGGTGGGAGCTCCTTGGGCTCAAAGTCAATCACTAGCAATAGCAGCTCCTCACCAAACCCTATCTTTGAAGGCTCAAAGTATGCGATTCTCTGCAGCAGCTTGGCAATGCAAGCTCAGCCTTCTCTAATGGAGCTTTTACTAATCACTGGACTGCCAAAGCCACTCCTATTTGCATACAGATAATAAGGATGTGAAAAGGCCAATTCATTCAATATCATATCATGTTTTCAAAGCAGAAATGAGTTACATACATGAATATTGTTTCTGCATACCAATTGATCAAGAGTTTATTAAACTTTCAAAGGGAGTTTTATAAAGAAAATGACACTTCTCAGACCAAGTAAACGAACCTGCTTGCCTGCCTGCTGCCCTTTGTAGCATCTTGA

Coding sequence (CDS)

ATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGCATGCACGAGTTACTTGGAAGACATAATAAGCTACCAGAGGTGAATAACTTTTGCCAACCTCTATCTCAGATGGAAAAGAGTGTGTGTGCTAATTTGAGAGAGGAATTTGCAGCCAAAAACAAAGAACTTAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAGAAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCTTAGAGACAAAGGAAGCTTTGCTGATGAAAGAGAATCAGAGACTGAGGAATCGAGTGAGAGCTTTGAATAGAGATGAGCAAGAACAGCAAGCAGTGGGTGTTGGTGGGAGCTCCTTGGGCTCAAAGTCAATCACTAGCAATAGCAGCTCCTCACCAAACCCTATCTTTGAAGGCTCAAAGTATGCGATTCTCTGCAGCAGCTTGGCAATGCAAGCTCAGCCTTCTCTAATGGAGCTTTTACTAATCACTGGACTGCCAAAGCCACTCCTATTTGCATACAGATAA

Protein sequence

MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMHELLGRHNKLPEVNNFCQPLSQMEKSVCANLREEFAAKNKELRHMKGEELEELGIEELKQLEKLLEIGLNRVLETKEALLMKENQRLRNRVRALNRDEQEQQAVGVGGSSLGSKSITSNSSSSPNPIFEGSKYAILCSSLAMQAQPSLMELLLITGLPKPLLFAYR

Homology

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BLAST of Cp4.1LG14g04960 vs. Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-35
Identity = 92/171 (53.80%), Postives = 123/171 (71.93%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KIQIKKIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLFDYSSS
Sbjct: 1   MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Query: 61  SMHELLGR---HNK-LPEVNNFCQPLSQMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           SM ++L R   H+K L +++     L  +E S  + L +E + K+  LR M+GEEL+ L 
Sbjct: 61  SMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLN 120

Query: 121 IEELKQLEKLLEIGLNRVLETKEALLMKE-NQRLRNRVRALNRDEQEQQAV 167
           IEEL+QLE+ LE GL+RV+E K   +M+E NQ  +  +  +  +E+ +Q V
Sbjct: 121 IEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQV 171

[Close]

BLAST of Cp4.1LG14g04960 vs. Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.6e-35
Identity = 101/223 (45.29%), Postives = 132/223 (59.19%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KIQI+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLF++ SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  SMHELLGRHN----KLPEVNNFCQPLSQMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           SM E+L RHN     L +++     L  +E S  A + +E A K+  LR M+GEEL+ L 
Sbjct: 61  SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

Query: 121 IEELKQLEKLLEIGLNRVLETKE--------------ALLMKENQRLRNRVRALNRDEQ- 180
           IEEL+QLEK LE GL RV+ETK                 LM EN+RLR +   L  + + 
Sbjct: 121 IEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENER 180

Query: 181 ---------------EQQAVGVGGSSLGSKSITSNSSSSPNPI 190
                          E +   V      S+SIT+  +S+  P+
Sbjct: 181 LGMQICNNVHAHGGAESENAAVYEEGQSSESITNAGNSTGAPV 223

[Close]

BLAST of Cp4.1LG14g04960 vs. Swiss-Prot
Match: AGL24_ARATH (MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-34
Identity = 94/202 (46.53%), Postives = 135/202 (66.83%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KI+IKKIDNI ARQVTFSKRRRG+FKKA EL+ LCDAD+ALI+FSA+GKLF++SSS
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  SMHELLGRHN-KLPEVNNFCQPLS---QMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
            M ++LGR++     +N    P S   ++E    + L +E   K K+LR ++GE+L+ L 
Sbjct: 61  RMRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLN 120

Query: 121 IEELKQLEKLLEIGLNRV--------------LETKEALLMKENQRLRNRVRALNRDEQE 180
           +EEL++LEKLLE GL+RV              LE + + L+ EN+RLR+++  L     E
Sbjct: 121 LEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDKLETL-----E 180

Query: 181 QQAVGVGGSSLGSKSITSNSSS 185
           +  +     +L ++S+T+N SS
Sbjct: 181 RAKLTTLKEALETESVTTNVSS 197

[Close]

BLAST of Cp4.1LG14g04960 vs. Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 4.8e-32
Identity = 88/209 (42.11%), Postives = 126/209 (60.29%), Query Frame = 1


Query: 3   RQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSM 62
           R++I I++IDN+AARQVTFSKRRRGLFKKA EL+ LCDA++ L+VFSA+GKLF ++S+SM
Sbjct: 22  RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSM 81

Query: 63  HELLGRHNKLPEVNNFCQP----LSQMEKSVCANLREEFAAKNKELRHMKGEELEELGIE 122
            +++ R+N   +     +P    L   + S CA L+EE A  +  LR M+GEEL  L +E
Sbjct: 82  EQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVE 141

Query: 123 ELKQLEKLLEIGLNRVLET--------------KEALLMKENQRLRNRVRALNRDEQEQQ 182
           +L++LEK LE GL  VL+T              K   L++EN RL+ +++       E+ 
Sbjct: 142 QLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEEM 201

Query: 183 AVG-----VGGSSLGSKSITSNSSSSPNP 189
             G     V      S+S+T+ S   P P
Sbjct: 202 QPGPDSEIVYEEGQSSESVTNASYPRPPP 230

[Close]

BLAST of Cp4.1LG14g04960 vs. Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 6.9e-31
Identity = 81/178 (45.51%), Postives = 116/178 (65.17%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R++ +I++I++ AARQVTFSKRRRGLFKKA ELA LCDAD+AL+VFS++GKL  ++SS
Sbjct: 1   MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASS 60

Query: 61  SMHEL----------LGRHNKLPEVN----------------NFCQPLSQMEKSVCANLR 120
           +M+E+          LG+ +K P ++                 +   L Q+E S C++L 
Sbjct: 61  NMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLN 120

Query: 121 EEFAAKNKELRHMKGEELEELGIEELKQLEKLLEIGLNRVLETKEALLMKENQRLRNR 153
           E+ A  + +LR M+GEELE L +EEL+Q+EK LE GL RVL TK+   M+E   L+ +
Sbjct: 121 EQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRK 178

[Close]

BLAST of Cp4.1LG14g04960 vs. TrEMBL
Match: A0A061E2Z6_THECC (MIKC mads-box transcription factor, putative isoform 2 OS=Theobroma cacao GN=TCM_007378 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.2e-39
Identity = 98/166 (59.04%), Postives = 122/166 (73.49%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDN AARQVTFSKRRRGLFKKAHEL+TLCDA+IAL+VFSA+GKLF+YSS+
Sbjct: 1   MTRQKIQIKKIDNTAARQVTFSKRRRGLFKKAHELSTLCDAEIALVVFSATGKLFEYSST 60

Query: 61  SMHELLGRHNKLPEVNNFCQPL----SQMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           S  +++ R N   E  N    +     Q+E S  A L +E A KN+ELRH++GEEL+ L 
Sbjct: 61  STGQVIERRNLQSERTNGLDRVPSLEMQIESSAHAMLGKEIAEKNRELRHLRGEELQGLN 120

Query: 121 IEELKQLEKLLEIGLNRVLETKEALLMKENQRLRNRVRALNRDEQE 163
           +EELK LEKLLE GL+RV ETK+   +KE   L+ +   L  + Q+
Sbjct: 121 LEELKHLEKLLEAGLSRVTETKDERFLKEISNLKRKGAELMEENQQ 166

[Close]

BLAST of Cp4.1LG14g04960 vs. TrEMBL
Match: A0A0D2S8R6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G055700 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.7e-39
Identity = 99/172 (57.56%), Postives = 125/172 (72.67%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDN AARQVTFSKRRRGLFKKA+EL+TLCDA+IAL+VFS +GKLF+YSS+
Sbjct: 16  MTRQKIQIKKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSNTGKLFEYSST 75

Query: 61  SMHELLGRHNKLPEVNNFCQPLS----QMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           S  +++ R N   E  +   P+S    Q++ S CA L  E A K KELR ++GEEL+ L 
Sbjct: 76  STRQVIERRNLQSERIDLLDPISTLELQLQSSTCAKLGTEIAEKTKELRQLRGEELQGLD 135

Query: 121 IEELKQLEKLLEIGLNRVLETKEALLMKENQRL-RNRVRALNRDEQEQQAVG 168
           +EELK LEKLLE GLNRV +TK+ L  KE   L R  V  +  ++Q ++ +G
Sbjct: 136 LEELKHLEKLLEGGLNRVTQTKDELFFKEISILKRKEVELMEENQQLKEKMG 187

[Close]

BLAST of Cp4.1LG14g04960 vs. TrEMBL
Match: A0A061E173_THECC (MIKC mads-box transcription factor, putative isoform 1 OS=Theobroma cacao GN=TCM_007378 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.7e-39
Identity = 103/189 (54.50%), Postives = 130/189 (68.78%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDN AARQVTFSKRRRGLFKKAHEL+TLCDA+IAL+VFSA+GKLF+YSS+
Sbjct: 1   MTRQKIQIKKIDNTAARQVTFSKRRRGLFKKAHELSTLCDAEIALVVFSATGKLFEYSST 60

Query: 61  SMHELLGRHNKLPEVNNFCQPL----SQMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           S  +++ R N   E  N    +     Q+E S  A L +E A KN+ELRH++GEEL+ L 
Sbjct: 61  STGQVIERRNLQSERTNGLDRVPSLEMQIESSAHAMLGKEIAEKNRELRHLRGEELQGLN 120

Query: 121 IEELKQLEKLLEIGLNRVLETKEALLMKENQRLRNRVRALNRDEQEQQAVGVGGSSLGSK 180
           +EELK LEKLLE GL+RV ETK+   +KE   L+ +   L  +E +Q    +G SS+   
Sbjct: 121 LEELKHLEKLLEAGLSRVTETKDERFLKEISNLKRKGAEL-MEENQQLKQQIGNSSMDQA 180

Query: 181 SITSNSSSS 186
            +      S
Sbjct: 181 IVPQQGQPS 188

[Close]

BLAST of Cp4.1LG14g04960 vs. TrEMBL
Match: A0A0D2V9K5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G055700 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.7e-39
Identity = 99/172 (57.56%), Postives = 125/172 (72.67%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDN AARQVTFSKRRRGLFKKA+EL+TLCDA+IAL+VFS +GKLF+YSS+
Sbjct: 1   MTRQKIQIKKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSNTGKLFEYSST 60

Query: 61  SMHELLGRHNKLPEVNNFCQPLS----QMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           S  +++ R N   E  +   P+S    Q++ S CA L  E A K KELR ++GEEL+ L 
Sbjct: 61  STRQVIERRNLQSERIDLLDPISTLELQLQSSTCAKLGTEIAEKTKELRQLRGEELQGLD 120

Query: 121 IEELKQLEKLLEIGLNRVLETKEALLMKENQRL-RNRVRALNRDEQEQQAVG 168
           +EELK LEKLLE GLNRV +TK+ L  KE   L R  V  +  ++Q ++ +G
Sbjct: 121 LEELKHLEKLLEGGLNRVTQTKDELFFKEISILKRKEVELMEENQQLKEKMG 172

[Close]

BLAST of Cp4.1LG14g04960 vs. TrEMBL
Match: A0A0D2TVC3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G055700 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.3e-39
Identity = 96/162 (59.26%), Postives = 120/162 (74.07%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDN AARQVTFSKRRRGLFKKA+EL+TLCDA+IAL+VFS +GKLF+YSS+
Sbjct: 1   MTRQKIQIKKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSNTGKLFEYSST 60

Query: 61  SMHELLGRHNKLPEVNNFCQPLS----QMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           S  +++ R N   E  +   P+S    Q++ S CA L  E A K KELR ++GEEL+ L 
Sbjct: 61  STRQVIERRNLQSERIDLLDPISTLELQLQSSTCAKLGTEIAEKTKELRQLRGEELQGLD 120

Query: 121 IEELKQLEKLLEIGLNRVLETKEALLMKENQRLRNRVRALNR 159
           +EELK LEKLLE GLNRV +TK+ L  KE   L+ ++   +R
Sbjct: 121 LEELKHLEKLLEGGLNRVTQTKDELFFKEISILKRKLTLSDR 162

[Close]

BLAST of Cp4.1LG14g04960 vs. TAIR10
Match: AT2G22540.1 (AT2G22540.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.6e-36
Identity = 101/223 (45.29%), Postives = 132/223 (59.19%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KIQI+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLF++ SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  SMHELLGRHN----KLPEVNNFCQPLSQMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           SM E+L RHN     L +++     L  +E S  A + +E A K+  LR M+GEEL+ L 
Sbjct: 61  SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

Query: 121 IEELKQLEKLLEIGLNRVLETKE--------------ALLMKENQRLRNRVRALNRDEQ- 180
           IEEL+QLEK LE GL RV+ETK                 LM EN+RLR +   L  + + 
Sbjct: 121 IEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENER 180

Query: 181 ---------------EQQAVGVGGSSLGSKSITSNSSSSPNPI 190
                          E +   V      S+SIT+  +S+  P+
Sbjct: 181 LGMQICNNVHAHGGAESENAAVYEEGQSSESITNAGNSTGAPV 223

[Close]

BLAST of Cp4.1LG14g04960 vs. TAIR10
Match: AT4G24540.1 (AT4G24540.1 AGAMOUS-like 24)

HSP 1 Score: 147.9 bits (372), Expect = 7.6e-36
Identity = 94/202 (46.53%), Postives = 135/202 (66.83%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KI+IKKIDNI ARQVTFSKRRRG+FKKA EL+ LCDAD+ALI+FSA+GKLF++SSS
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  SMHELLGRHN-KLPEVNNFCQPLS---QMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
            M ++LGR++     +N    P S   ++E    + L +E   K K+LR ++GE+L+ L 
Sbjct: 61  RMRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLN 120

Query: 121 IEELKQLEKLLEIGLNRV--------------LETKEALLMKENQRLRNRVRALNRDEQE 180
           +EEL++LEKLLE GL+RV              LE + + L+ EN+RLR+++  L     E
Sbjct: 121 LEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDKLETL-----E 180

Query: 181 QQAVGVGGSSLGSKSITSNSSS 185
           +  +     +L ++S+T+N SS
Sbjct: 181 RAKLTTLKEALETESVTTNVSS 197

[Close]

BLAST of Cp4.1LG14g04960 vs. TAIR10
Match: AT4G37940.1 (AT4G37940.1 AGAMOUS-like 21)

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25
Identity = 79/190 (41.58%), Postives = 114/190 (60.00%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R KI I++ID+  +RQVTFSKRR+GL KKA ELA LCDA++ LI+FS++GKL+D++SS
Sbjct: 1   MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61  SMHELLGRHNKLP-EVNNFCQPLSQME--KSVCANLREEFAAKNKELRHMKGEELEELGI 120
           SM  ++ R+NK   E      P S+++  +   A LR+E  A  +  R M GE+L  L +
Sbjct: 61  SMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSV 120

Query: 121 EELKQLEKLLEIGLNRVLETKEALLMKENQRL---RNRVRALNRD-EQEQQAVGVGGSSL 180
            EL  LE  +EI L  +   KE LL +E Q L   RN +   N D  ++ Q +      L
Sbjct: 121 NELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQENVEL 180

Query: 181 GSKSITSNSS 184
             K+  +N++
Sbjct: 181 YKKAYMANTN 190

[Close]

BLAST of Cp4.1LG14g04960 vs. TAIR10
Match: AT3G57230.1 (AT3G57230.1 AGAMOUS-like 16)

HSP 1 Score: 105.9 bits (263), Expect = 3.3e-23
Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R KI IK+I+N  +RQVTFSKRR GL KKA ELA LCDA++ +I+FS++G+L+D+SSS
Sbjct: 1   MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61  SMHELLGRHNKLP-EVNNFCQPLSQME--KSVCANLREEFAAKNKELRHMKGEELEELGI 120
           SM  ++ R++    E ++   P S+++  +   A L+ +     +  R M GEEL  L +
Sbjct: 61  SMKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSV 120

Query: 121 EELKQLEKLLEIGLNRVLETKEALLMKENQRLRNRVRALNRD 160
           E L+ LE  LE+ L  V        MK++Q L   ++ LNR+
Sbjct: 121 EALQNLENQLELSLRGV-------RMKKDQMLIEEIQVLNRE 155

[Close]

BLAST of Cp4.1LG14g04960 vs. TAIR10
Match: AT2G45650.1 (AT2G45650.1 AGAMOUS-like 6)

HSP 1 Score: 104.4 bits (259), Expect = 9.6e-23
Identity = 60/159 (37.74%), Postives = 100/159 (62.89%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R ++++K+I+N   RQVTFSKRR GL KKA+EL+ LCDA++ALI+FS+ GKL+++ S 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  SMHELLGRHNKLPEV---NNFCQPLSQMEKSVCANLREEFAAKNKELRHMKGEELEELGI 120
            +   + R+N+       NN  +  +Q        L+ ++ +  +  R++ GE+L E+G+
Sbjct: 61  GIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGV 120

Query: 121 EELKQLEKLLEIGLNRVLETKEALLMKENQRLRNRVRAL 157
           +EL+ LE+ LE  L    + K  ++M+E + LR + R L
Sbjct: 121 KELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQL 159

[Close]

BLAST of Cp4.1LG14g04960 vs. NCBI nr
Match: gi|778692373|ref|XP_011653451.1| (PREDICTED: MADS-box protein JOINTLESS-like [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 3.6e-64
Identity = 152/209 (72.73%), Postives = 168/209 (80.38%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKI+IKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS
Sbjct: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  SMHELLGRHNKLPEVNNFCQPLSQMEKSVCANLREEFAAKNKELRHMKGEELEELGIEEL 120
           SM +LL RHN LPE+N+  QP SQ+EKS  A L EEFAAK KELRHMKGEEL+ELGIEEL
Sbjct: 61  SMLDLLRRHNMLPELNSISQPPSQLEKSAHAKLTEEFAAKTKELRHMKGEELQELGIEEL 120

Query: 121 KQLEKLLEIGLNRVLET--------------KEALLMKENQRLRNRV--RALNRD---EQ 180
           KQLEKLLE GLNRV+ET              KE+LLMKENQRLRN++    +NRD   E+
Sbjct: 121 KQLEKLLENGLNRVIETKDEKFLKEIVTVKEKESLLMKENQRLRNKLMETLINRDDQQEE 180

Query: 181 EQQAVGVGGSSLG--SKSITSNSSSSPNP 189
           E+  V + G+S+G  SKS TSNSSSS NP
Sbjct: 181 EEAVVLIAGNSVGSKSKSNTSNSSSSQNP 209

[Close]

BLAST of Cp4.1LG14g04960 vs. NCBI nr
Match: gi|659108938|ref|XP_008454463.1| (PREDICTED: MADS-box protein JOINTLESS-like isoform X1 [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 8.1e-64
Identity = 153/209 (73.21%), Postives = 169/209 (80.86%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKI+IKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS
Sbjct: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  SMHELLGRHNKLPEVNNFCQ-PLSQMEKSVCANLREEFAAKNKELRHMKGEELEELGIEE 120
           SM +LL RHN LPE+NN  Q P SQ+EKS  A L EEFAAK KELRHMKGEEL+ELGIEE
Sbjct: 61  SMLDLLRRHNMLPELNNISQLPPSQLEKSAHAKLTEEFAAKTKELRHMKGEELQELGIEE 120

Query: 121 LKQLEKLLEIGLNRVLET--------------KEALLMKENQRLRNRV--RALNRDEQEQ 180
           LK+LEKLLE GLNRV+ET              KE LLMKENQRLRN++    ++RDEQE+
Sbjct: 121 LKELEKLLENGLNRVIETKDEKFLKEIGTVKEKETLLMKENQRLRNKLMETLVDRDEQEE 180

Query: 181 Q--AVGVGGSSLG--SKSITSNSSSSPNP 189
           +   V +GG+S+G  SKS TSNSSSS NP
Sbjct: 181 EEAVVVIGGNSVGSKSKSNTSNSSSSQNP 209

[Close]

BLAST of Cp4.1LG14g04960 vs. NCBI nr
Match: gi|1000958008|ref|XP_015576953.1| (PREDICTED: MADS-box protein SVP isoform X2 [Ricinus communis])

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 107/208 (51.44%), Postives = 144/208 (69.23%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDNI ARQVTFSKRRRGLFKKA+EL+TLCDA+IAL+VFSA+GKLF+Y+SS
Sbjct: 1   MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYASS 60

Query: 61  SMHELLGRHNKLP-EVNNFCQPLSQMEKSVCANLREEFAAKNKELRHMKGEELEELGIEE 120
           S+++++ RHN  P  +    QP  +++   C  L +E A K +ELR M+GEEL+ L +EE
Sbjct: 61  SLNQVIERHNLHPRNLGRLDQPSLELQLENCTALSKEVAEKTQELRQMRGEELQGLSMEE 120

Query: 121 LKQLEKLLEIGLNRVLETKE--------------ALLMKENQRLRNRVRALNRDEQEQQA 180
           L+QLEK LE GL RV+ETK+              A LM+EN+RL+ ++  +N   +  Q 
Sbjct: 121 LQQLEKSLEGGLKRVMETKDDAITNEINDLKRKGAELMEENERLKQQM--VNAPVERLQL 180

Query: 181 VGVGGSSLGSKSITSNSSSSPNPIFEGS 194
           +  G SS    + TS+ ++ P   +EGS
Sbjct: 181 LEQGQSSDSMMTNTSSGTADPPQDYEGS 206

[Close]

BLAST of Cp4.1LG14g04960 vs. NCBI nr
Match: gi|590688075|ref|XP_007042845.1| (MIKC mads-box transcription factor, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-39
Identity = 98/166 (59.04%), Postives = 122/166 (73.49%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDN AARQVTFSKRRRGLFKKAHEL+TLCDA+IAL+VFSA+GKLF+YSS+
Sbjct: 1   MTRQKIQIKKIDNTAARQVTFSKRRRGLFKKAHELSTLCDAEIALVVFSATGKLFEYSST 60

Query: 61  SMHELLGRHNKLPEVNNFCQPL----SQMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           S  +++ R N   E  N    +     Q+E S  A L +E A KN+ELRH++GEEL+ L 
Sbjct: 61  STGQVIERRNLQSERTNGLDRVPSLEMQIESSAHAMLGKEIAEKNRELRHLRGEELQGLN 120

Query: 121 IEELKQLEKLLEIGLNRVLETKEALLMKENQRLRNRVRALNRDEQE 163
           +EELK LEKLLE GL+RV ETK+   +KE   L+ +   L  + Q+
Sbjct: 121 LEELKHLEKLLEAGLSRVTETKDERFLKEISNLKRKGAELMEENQQ 166

[Close]

BLAST of Cp4.1LG14g04960 vs. NCBI nr
Match: gi|823260249|ref|XP_012462847.1| (PREDICTED: MADS-box protein SVP-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 99/172 (57.56%), Postives = 125/172 (72.67%), Query Frame = 1


Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDN AARQVTFSKRRRGLFKKA+EL+TLCDA+IAL+VFS +GKLF+YSS+
Sbjct: 16  MTRQKIQIKKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSNTGKLFEYSST 75

Query: 61  SMHELLGRHNKLPEVNNFCQPLS----QMEKSVCANLREEFAAKNKELRHMKGEELEELG 120
           S  +++ R N   E  +   P+S    Q++ S CA L  E A K KELR ++GEEL+ L 
Sbjct: 76  STRQVIERRNLQSERIDLLDPISTLELQLQSSTCAKLGTEIAEKTKELRQLRGEELQGLD 135

Query: 121 IEELKQLEKLLEIGLNRVLETKEALLMKENQRL-RNRVRALNRDEQEQQAVG 168
           +EELK LEKLLE GLNRV +TK+ L  KE   L R  V  +  ++Q ++ +G
Sbjct: 136 LEELKHLEKLLEGGLNRVTQTKDELFFKEISILKRKEVELMEENQQLKEKMG 187

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g04960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
JOIN_SOLLC	1.6e-35	53.80	MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1	[more]
SVP_ARATH	4.6e-35	45.29	MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1	[more]
AGL24_ARATH	1.3e-34	46.53	MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1	[more]
MAD47_ORYSJ	4.8e-32	42.11	MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 ...	[more]
MAD55_ORYSJ	6.9e-31	45.51	MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 ...	[more]

BLAST of Cp4.1LG14g04960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E2Z6_THECC	2.2e-39	59.04	MIKC mads-box transcription factor, putative isoform 2 OS=Theobroma cacao GN=TCM...	[more]
A0A0D2S8R6_GOSRA	3.7e-39	57.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G055700 PE=4 SV=1	[more]
A0A061E173_THECC	3.7e-39	54.50	MIKC mads-box transcription factor, putative isoform 1 OS=Theobroma cacao GN=TCM...	[more]
A0A0D2V9K5_GOSRA	3.7e-39	57.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G055700 PE=4 SV=1	[more]
A0A0D2TVC3_GOSRA	6.3e-39	59.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G055700 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g04960 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22540.1	2.6e-36	45.29	K-box region and MADS-box transcription factor family protein	[more]
AT4G24540.1	7.6e-36	46.53	AGAMOUS-like 24	[more]
AT4G37940.1	1.6e-25	41.58	AGAMOUS-like 21	[more]
AT3G57230.1	3.3e-23	41.98	AGAMOUS-like 16	[more]
AT2G45650.1	9.6e-23	37.74	AGAMOUS-like 6	[more]

BLAST of Cp4.1LG14g04960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692373\|ref\|XP_011653451.1\|	3.6e-64	72.73	PREDICTED: MADS-box protein JOINTLESS-like [Cucumis sativus]	[more]
gi\|659108938\|ref\|XP_008454463.1\|	8.1e-64	73.21	PREDICTED: MADS-box protein JOINTLESS-like isoform X1 [Cucumis melo]	[more]
gi\|1000958008\|ref\|XP_015576953.1\|	4.8e-40	51.44	PREDICTED: MADS-box protein SVP isoform X2 [Ricinus communis]	[more]
gi\|590688075\|ref\|XP_007042845.1\|	3.1e-39	59.04	MIKC mads-box transcription factor, putative isoform 2 [Theobroma cacao]	[more]
gi\|823260249\|ref\|XP_012462847.1\|	5.3e-39	57.56	PREDICTED: MADS-box protein SVP-like isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002487	TF_Kbox
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g04960.1	Cp4.1LG14g04960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 38..59 score: 1.3E-25coord: 23..38 score: 1.3E-25coord: 3..23 score: 1.3
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 score: 3.1
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 6.4
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 28
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..85 score: 1.7
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 90..160 score: 8.9
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 83..166 score: 10
None	No IPR available	unknown	Coil	Coil	coord: 132..166 score: -coord: 90..110 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..162 score: 3.7
None	No IPR available	PANTHER	PTHR11945:SF179	MADS-BOX PROTEIN SVP	coord: 2..162 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g04960	Cucsa.331840	Cucumber (Gy14) v1	cgycpeB0867
Cp4.1LG14g04960	CmaCh16G002760	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g04960	CmoCh16G002960	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g04960	Csa4G182260	Cucumber (Chinese Long) v2	cpecuB223
Cp4.1LG14g04960	MELO3C018055	Melon (DHL92) v3.5.1	cpemeB201
Cp4.1LG14g04960	ClCG10G009620	Watermelon (Charleston Gray)	cpewcgB190
Cp4.1LG14g04960	CSPI04G11850	Wild cucumber (PI 183967)	cpecpiB225
Cp4.1LG14g04960	MELO3C018055.2	Melon (DHL92) v3.6.1	cpemedB243
Cp4.1LG14g04960	CsaV3_4G014770	Cucumber (Chinese Long) v3	cpecucB0268
Cp4.1LG14g04960	Bhi11G000867	Wax gourd	cpewgoB0266
Cp4.1LG14g04960	CsGy4G011270	Cucumber (Gy14) v2	cgybcpeB489

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG14g04960	Cp4.1LG01g02990	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g04960	Cucurbita maxima (Rimu)	cmacpeB114
Cp4.1LG14g04960	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g04960	Cucurbita moschata (Rifu)	cmocpeB092
Cp4.1LG14g04960	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g04960	Bottle gourd (USVL1VR-Ls)	cpelsiB168
Cp4.1LG14g04960	Watermelon (97103) v1	cpewmB204
Cp4.1LG14g04960	Melon (DHL92) v3.6.1	cpemedB220
Cp4.1LG14g04960	Melon (DHL92) v3.6.1	cpemedB240
Cp4.1LG14g04960	Silver-seed gourd	carcpeB0407
Cp4.1LG14g04960	Silver-seed gourd	carcpeB0523