Cp4.1LG14g04320 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g04320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAromatic-L-amino-acid decarboxylase
LocationCp4.1LG14 : 1733634 .. 1735204 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGTTTGATTTTAAAAGTTTGTGGAAGTTATGGTGGTTTGAATTGAATTATGATTTATGGGTACCATTGTATTTGTTCTTGATTCGATGCAAGCTGGAACTCTGGAACCGGAAGTTGCATTTCTCACTGCTTCTCTTGTATGGTTCTATTTTATATGCTTATGAAATCCACCCCCACCACCCTTTTGTATGTTATAGATTTGAATTGTGCCCAAGTGTTCTCTAATATTTCCTTTATAAATAATTGAAGACAGATTCCAGATATTTTCCCGGTGCTTGCGGCTGCATATAAGACACTTGTATCCAAGTCGAGGGATTCTCTGTCTACAATTATTCGGGTTCAAAGCATGTAATTCTTTCTGACTTCTTGGATATGACAGACTGTTGCTAATTTATTTGTGGGTATGGACGAGTGATCTTTGGACTTAATCATATGCAGATTACAGAGTTTTTGAAAAGATGTGGAATTTCTGGTAACTCTTCTTATGTCCTTGTGGCTCGTTTTAATTTAATTGTATTTCTGAACTCTTGATAAACTCAACCTTTTTGTACAATCTATTTACCCGTGCTAGATGAAGTCCATCGAGAAACTAATACATGGTAAAGAGATCAACCTAGAGGAATTGGGAGGGAGAGCAGACCAAGCTTGGATACGAAAGGTGCAATCTATGTCTTCTTGATATGCAATATTGGTTTTTCGTTTCATTTGGTTTTTTTCACCTCTCACCATTGTTTTGCCCTAGTCTTCCTTTTTATTAAGTAAACATTGAAATTCTAATACAAATTTCAAAAACAAAAAAGAAGTTTTTAAGAACTATTTCTTTTTAAGTTTCGACACTTTATTTTTAAATACTCCCATAAAAAGTAGATACCATAACAAAGAAAACAAAGAAATCAATAGTTAAAAATGTTATCTCCCAGCTTAATTTTCAAAAATCAAATGATTATACAATGGAGCTTCAATTATCAGACTCTTATGCTTTAGATCCATCTCTACTAAGTTTTAGAGAGCCTTTGCTCGCTCCAAATCAATACGAGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAACATTTTTTTATAAGGTGTAGAAACCCCTCTCTAGCAAACACGTTTTAAAAACTTTGAGGGAAGTCCGAAAGGGAAAACCCAAAGAAGACAATATTTGCTAGCAATGGTGGACTTGGACTATCACAATACATTACACCGAATTATGGTACCATGGTTTTATCACTTGCCAATAACAAAATGGTCATTTTTTCTCCTTTCAGCATTTTAAGATAACTGGACCCGAGTTGACGGTATCATCATCACATGTAGAATCGCTGCGCGGGATGCCTTGTAGCTGCAAAACCTGCAACAAGTTTCATCTTTGGCTGTTGGCACACAGTCACTCCTCTATAGGTGAATGCATTGATTTGTTTTACAGTATAATTACTTTTAGGTTGATGATGTCTATATGGAATGTTCAAATGATTATGCTGTTTATGTCTGATGGGAATTGATTAATTTGTAATTAGATTGATGATGTCTAAGCAATTTTATAGAATTCTCAGGTAATCATG

mRNA sequence

ATGTCTGTGTTTGATTTTAAAAGTTTGTGGAAGTTATGGTGGTTTGAATTGAATTATGATTTATGGGTACCATTGTATTTGTTCTTGATTCGATGCAAGCTGGAACTCTGGAACCGGAAGTTGCATTTCTCACTGCTTCTCTTGTATGGTTCTATTTTATATGCTTATGAAATCCACCCCCACCACCCTTTTATGAAGTCCATCGAGAAACTAATACATGGTAAAGAGATCAACCTAGAGGAATTGGGAGGGAGAGCAGACCAAGCTTGGATACGAAAGCATTTTAAGATAACTGGACCCGAGTTGACGGTATCATCATCACATGTAGAATCGCTGCGCGGGATGCCTTGTAGCTGCAAAACCTGCAACAAGTTTCATCTTTGGCTGTTGGCACACAGTCACTCCTCTATAGGTGAATGCATTGATTTGTTTTACAGTATAATTACTTTTAGGTTGATGATGTCTATATGGAATGTTCAAATGATTATGCTGTTTATGTCTGATGGGAATTGATTAATTTGTAATTAGATTGATGATGTCTAAGCAATTTTATAGAATTCTCAGGTAATCATG

Coding sequence (CDS)

ATGTCTGTGTTTGATTTTAAAAGTTTGTGGAAGTTATGGTGGTTTGAATTGAATTATGATTTATGGGTACCATTGTATTTGTTCTTGATTCGATGCAAGCTGGAACTCTGGAACCGGAAGTTGCATTTCTCACTGCTTCTCTTGTATGGTTCTATTTTATATGCTTATGAAATCCACCCCCACCACCCTTTTATGAAGTCCATCGAGAAACTAATACATGGTAAAGAGATCAACCTAGAGGAATTGGGAGGGAGAGCAGACCAAGCTTGGATACGAAAGCATTTTAAGATAACTGGACCCGAGTTGACGGTATCATCATCACATGTAGAATCGCTGCGCGGGATGCCTTGTAGCTGCAAAACCTGCAACAAGTTTCATCTTTGGCTGTTGGCACACAGTCACTCCTCTATAGGTGAATGCATTGATTTGTTTTACAGTATAATTACTTTTAGGTTGATGATGTCTATATGGAATGTTCAAATGATTATGCTGTTTATGTCTGATGGGAATTGA

Protein sequence

MSVFDFKSLWKLWWFELNYDLWVPLYLFLIRCKLELWNRKLHFSLLLLYGSILYAYEIHPHHPFMKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSSSHVESLRGMPCSCKTCNKFHLWLLAHSHSSIGECIDLFYSIITFRLMMSIWNVQMIMLFMSDGN
Homology
[Close]
BLAST of Cp4.1LG14g04320 vs. TrEMBL
Match: A0A0A0LBY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207370 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVS 106
           +K+IEKL+HGKEINLEELG RADQA I+KHFKITGPELT+S
Sbjct: 115 VKAIEKLVHGKEINLEELGERADQAQIQKHFKITGPELTLS 155

[Close]
BLAST of Cp4.1LG14g04320 vs. TrEMBL
Match: A5BY91_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035626 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSS 107
           MK I+KLIHGKEI+LEE+ GRADQA I KH+KITGPEL +SS
Sbjct: 115 MKDIDKLIHGKEIDLEEMEGRADQAQIHKHYKITGPELGISS 156

[Close]
BLAST of Cp4.1LG14g04320 vs. TrEMBL
Match: D7TPJ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00500 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSS 107
           MK I+KLIHGKEI+LEE+ GRADQA I KH+KITGPEL +SS
Sbjct: 115 MKDIDKLIHGKEIDLEEMEGRADQAQIHKHYKITGPELGISS 156

[Close]
BLAST of Cp4.1LG14g04320 vs. TrEMBL
Match: A0A061E7N4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007059 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.6e-09
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSS 107
           MK++EKLI+GKEI+LEEL GRADQA I+KH+KITGPEL VS+
Sbjct: 138 MKAVEKLINGKEIDLEELEGRADQAQIQKHYKITGPELGVST 179

[Close]
BLAST of Cp4.1LG14g04320 vs. TrEMBL
Match: A0A061DZR1_THECC (Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_007059 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.6e-09
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSS 107
           MK++EKLI+GKEI+LEEL GRADQA I+KH+KITGPEL VS+
Sbjct: 85  MKAVEKLINGKEIDLEELEGRADQAQIQKHYKITGPELGVST 126

[Close]
BLAST of Cp4.1LG14g04320 vs. TAIR10
Match: AT4G34412.1 (AT4G34412.1 Kinase binding protein CGI-121 (InterPro:IPR013926))

HSP 1 Score: 50.8 bits (120), Expect = 9.4e-07
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSS 107
           M+ + KLI+GKEI+LEEL   A+QA I KH+KIT  EL +SS
Sbjct: 116 MEEVAKLINGKEIDLEELKTHANQANILKHYKITSQELGISS 157

[Close]
BLAST of Cp4.1LG14g04320 vs. NCBI nr
Match: gi|659112228|ref|XP_008456125.1| (PREDICTED: EKC/KEOPS complex subunit Tprkb [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSS 107
           +K+IEKL+HGKEINLEELG RADQA I+KHFKITGPELT+SS
Sbjct: 115 VKAIEKLVHGKEINLEELGERADQAQIQKHFKITGPELTLSS 156

[Close]
BLAST of Cp4.1LG14g04320 vs. NCBI nr
Match: gi|449445876|ref|XP_004140698.1| (PREDICTED: EKC/KEOPS complex subunit Tprkb [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVS 106
           +K+IEKL+HGKEINLEELG RADQA I+KHFKITGPELT+S
Sbjct: 115 VKAIEKLVHGKEINLEELGERADQAQIQKHFKITGPELTLS 155

[Close]
BLAST of Cp4.1LG14g04320 vs. NCBI nr
Match: gi|225428802|ref|XP_002285147.1| (PREDICTED: EKC/KEOPS complex subunit Tprkb [Vitis vinifera])

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSS 107
           MK I+KLIHGKEI+LEE+ GRADQA I KH+KITGPEL +SS
Sbjct: 115 MKDIDKLIHGKEIDLEEMEGRADQAQIHKHYKITGPELGISS 156

[Close]
BLAST of Cp4.1LG14g04320 vs. NCBI nr
Match: gi|147783534|emb|CAN75121.1| (hypothetical protein VITISV_035626 [Vitis vinifera])

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSS 107
           MK I+KLIHGKEI+LEE+ GRADQA I KH+KITGPEL +SS
Sbjct: 115 MKDIDKLIHGKEIDLEEMEGRADQAQIHKHYKITGPELGISS 156

[Close]
BLAST of Cp4.1LG14g04320 vs. NCBI nr
Match: gi|590686581|ref|XP_007042422.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 

Query: 65  MKSIEKLIHGKEINLEELGGRADQAWIRKHFKITGPELTVSS 107
           MK++EKLI+GKEI+LEEL GRADQA I+KH+KITGPEL VS+
Sbjct: 138 MKAVEKLINGKEIDLEELEGRADQAQIQKHYKITGPELGVST 179

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g04320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g04320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBY8_CUCSA2.1e-1082.93Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207370 PE=3 SV=1[more]
A5BY91_VITVI3.9e-0976.19Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035626 PE=3 SV=1[more]
D7TPJ4_VITVI3.9e-0976.19Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00500 PE=3 SV=... [more]
A0A061E7N4_THECC8.6e-0976.19Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007059 PE=3 SV=1[more]
A0A061DZR1_THECC8.6e-0976.19Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_007059 PE... [more]
BLAST of Cp4.1LG14g04320 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34412.19.4e-0759.52 Kinase binding protein CGI-121 (InterPro:IPR013926)[more]
BLAST of Cp4.1LG14g04320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112228|ref|XP_008456125.1|1.0e-1083.33PREDICTED: EKC/KEOPS complex subunit Tprkb [Cucumis melo][more]
gi|449445876|ref|XP_004140698.1|2.9e-1082.93PREDICTED: EKC/KEOPS complex subunit Tprkb [Cucumis sativus][more]
gi|225428802|ref|XP_002285147.1|5.6e-0976.19PREDICTED: EKC/KEOPS complex subunit Tprkb [Vitis vinifera][more]
gi|147783534|emb|CAN75121.1|5.6e-0976.19hypothetical protein VITISV_035626 [Vitis vinifera][more]
gi|590686581|ref|XP_007042422.1|1.2e-0876.19Uncharacterized protein isoform 1 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0044424 intracellular part
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g04320.1Cp4.1LG14g04320.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g04320Cucsa.244310Cucumber (Gy14) v1cgycpeB0652
Cp4.1LG14g04320CmaCh04G004920Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g04320CmoCh16G003810Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g04320CmoCh04G005310Cucurbita moschata (Rifu)cmocpeB668
Cp4.1LG14g04320Cla013066Watermelon (97103) v1cpewmB228
Cp4.1LG14g04320Csa3G207370Cucumber (Chinese Long) v2cpecuB205
Cp4.1LG14g04320MELO3C019508Melon (DHL92) v3.5.1cpemeB192
Cp4.1LG14g04320CSPI03G18520Wild cucumber (PI 183967)cpecpiB208
Cp4.1LG14g04320MELO3C019508.2Melon (DHL92) v3.6.1cpemedB234
Cp4.1LG14g04320CsaV3_3G018580Cucumber (Chinese Long) v3cpecucB0247
Cp4.1LG14g04320Bhi01G001255Wax gourdcpewgoB0295
Cp4.1LG14g04320Carg08165Silver-seed gourdcarcpeB0523
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g04320Cp4.1LG01g02280Cucurbita pepo (Zucchini)cpecpeB234
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g04320Cucumber (Gy14) v1cgycpeB0593
Cp4.1LG14g04320Cucurbita maxima (Rimu)cmacpeB035
Cp4.1LG14g04320Cucurbita maxima (Rimu)cmacpeB114
Cp4.1LG14g04320Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g04320Cucurbita moschata (Rifu)cmocpeB092
Cp4.1LG14g04320Wild cucumber (PI 183967)cpecpiB233
Cp4.1LG14g04320Cucumber (Chinese Long) v2cpecuB217
Cp4.1LG14g04320Cucumber (Chinese Long) v2cpecuB230
Cp4.1LG14g04320Bottle gourd (USVL1VR-Ls)cpelsiB171
Cp4.1LG14g04320Bottle gourd (USVL1VR-Ls)cpelsiB177
Cp4.1LG14g04320Watermelon (Charleston Gray)cpewcgB205
Cp4.1LG14g04320Watermelon (Charleston Gray)cpewcgB208
Cp4.1LG14g04320Watermelon (97103) v1cpewmB233
Cp4.1LG14g04320Melon (DHL92) v3.5.1cpemeB200
Cp4.1LG14g04320Melon (DHL92) v3.5.1cpemeB182
Cp4.1LG14g04320Cucumber (Gy14) v2cgybcpeB317
Cp4.1LG14g04320Silver-seed gourdcarcpeB0926
Cp4.1LG14g04320Cucumber (Chinese Long) v3cpecucB0261