Cp4.1LG14g04180 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g04180
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG14 : 1840903 .. 1841941 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAGTTTTCTTTTCCCTCCATTTCTCTCTCCCCTGCGAAGGTCACAACAGAGGGAAAACCTAACGACTGTCGATGCTCAATGGCATTCGGTTATCGATCTTCATCCCAAACCCTAATCGCCTTCTCTTTCGGATCCTCCATTCCTACCTCGGTTCCTCTCACATCGACATTGCCCCTCCGCCATCATCCCCACCATTCAAATGCTCAATCTCGCCCCGTTCCCTCTCTGCAACTCTTCGCAATCTCCTGCAGCCGCTCTCTGCGCCGGACCCACCTCCGATTCTATCTTATGCTTCGGTTTTCCAGTTCCTTACTGGCCAAAATCTGTTGAAATTGGGCCAACAAGTTCATGCCCATATGCTTCTCCGTGGCCTTGAGCCCACTGCACTTGTTGGTTCCAAGATGGTTGCGTTTTATGCGAGTTCTGGTGATATTGATTCATCTGTTGCGGTTTTCAATCGGATTAGTGAGCCTTCTTCTCTGTTGTTTAATTCTATGATTCGAGCCTATGCGCGATATGGGTTTGCGGAGAGAACTGTTGCCACTTATTTTTCTATGCATTCTTGGGGATTTACAGGGGATTACTTTACTTTTCCTTTTGTTCTTAAGTCTTCTGTGGATTTGTTGAGTGTTTGGATGGGGAAATGTGTTCATGGACTGGTTTTGAGAGCTGGGTTGCAGTTTGATTTGTATGTGGCTACTTCTTTGATTGATTTGTATGGGAAATGTGGTGAAATAAAGGATGCGCGTAAGGTGTTTGATAAAATGACTGTTAGAGATGTTTCGGCTTGGAATGCTTTACTTGCTGGTTACATGAAGGGGGGGTTTATAGATGCTGCTGTGGCGATTTTTGAGAGAATGCCGTGGAGGAATATCGTCTCTTGGACGACTATGATTTCTGGATACTCACAGAGCGGCTTGGCACAGCAGGCATTGAGTTTGTTTGATGAAATGCTGAAAGAAGATTCAGGAGTAAGACCCAATTGGGTGACTATAATGAGTGTCCTCCCAGCTTGTGCACAATCATCGGCACTCGA

mRNA sequence

CAAAAGTTTTCTTTTCCCTCCATTTCTCTCTCCCCTGCGAAGGTCACAACAGAGGGAAAACCTAACGACTGTCGATGCTCAATGGCATTCGGTTATCGATCTTCATCCCAAACCCTAATCGCCTTCTCTTTCGGATCCTCCATTCCTACCTCGGTTCCTCTCACATCGACATTGCCCCTCCGCCATCATCCCCACCATTCAAATGCTCAATCTCGCCCCCCGCTCTCTGCGCCGGACCCACCTCCGATTCTATCTTATGCTTCGGTTTTCCAGTTCCTTACTGGCCAAAATCTGTTGAAATTGGGCCAACAAGTTCATGCCCATATGCTTCTCCGTGGCCTTGAGCCCACTGCACTTGTTGGTTCCAAGATGGTTGCGTTTTATGCGAGTTCTGGTGATATTGATTCATCTGTTGCGGTTTTCAATCGGATTAGTGAGCCTTCTTCTCTGTTGTTTAATTCTATGATTCGAGCCTATGCGCGATATGGGTTTGCGGAGAGAACTGTTGCCACTTATTTTTCTATGCATTCTTGGGGATTTACAGGGGATTACTTTACTTTTCCTTTTGTTCTTAAGTCTTCTGTGGATTTGTTGAGTGTTTGGATGGGGAAATGTGTTCATGGACTGGTTTTGAGAGCTGGGTTGCAGAGTAAGACCCAATTGGGTGACTATAATGAGTGTCCTCCCAGCTTGTGCACAATCATCGGCACTCGA

Coding sequence (CDS)

CAAAAGTTTTCTTTTCCCTCCATTTCTCTCTCCCCTGCGAAGGTCACAACAGAGGGAAAACCTAACGACTGTCGATGCTCAATGGCATTCGGTTATCGATCTTCATCCCAAACCCTAATCGCCTTCTCTTTCGGATCCTCCATTCCTACCTCGGTTCCTCTCACATCGACATTGCCCCTCCGCCATCATCCCCACCATTCAAATGCTCAATCTCGCCCCCCGCTCTCTGCGCCGGACCCACCTCCGATTCTATCTTATGCTTCGGTTTTCCAGTTCCTTACTGGCCAAAATCTGTTGAAATTGGGCCAACAAGTTCATGCCCATATGCTTCTCCGTGGCCTTGAGCCCACTGCACTTGTTGGTTCCAAGATGGTTGCGTTTTATGCGAGTTCTGGTGATATTGATTCATCTGTTGCGGTTTTCAATCGGATTAGTGAGCCTTCTTCTCTGTTGTTTAATTCTATGATTCGAGCCTATGCGCGATATGGGTTTGCGGAGAGAACTGTTGCCACTTATTTTTCTATGCATTCTTGGGGATTTACAGGGGATTACTTTACTTTTCCTTTTGTTCTTAAGTCTTCTGTGGATTTGTTGAGTGTTTGGATGGGGAAATGTGTTCATGGACTGGTTTTGAGAGCTGGGTTGCAGAGTAAGACCCAATTGGGTGACTATAATGAGTGTCCTCCCAGCTTGTGCACAATCATCGGCACTCGA

Protein sequence

QKFSFPSISLSPAKVTTEGKPNDCRCSMAFGYRSSSQTLIAFSFGSSIPTSVPLTSTLPLRHHPHHSNAQSRPPLSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWMGKCVHGLVLRAGLQSKTQLGDYNECPPSLCTIIGTR
Homology
[Close]
BLAST of Cp4.1LG14g04180 vs. Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-11
Identity = 56/182 (30.77%), Postives = 90/182 (49.45%), Query Frame = 1 

Query: 58  LPLRHHPHHSNAQSRPPLSAPDPPPILSYASVFQ--FLTGQNL-----LKLGQQVHAHML 117
           L L H P     QSR  +S+  P   L   S  +  FL GQ L     ++  + VH+ ++
Sbjct: 8   LHLLHFPKFRKFQSRK-VSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRII 67

Query: 118 LRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPSSLLFNSMIRAYARYGFAERTVA 177
           L  L   + +G K++  YAS  D+ S+  VF+ I E + ++ N MIR+Y   GF    V 
Sbjct: 68  LEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVK 127

Query: 178 TYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWMGKCVHGLVLRAGLQSKTQLGD-----YN 228
            + +M       D++TFP VLK+     ++ +G+ +HG   + GL S   +G+     Y 
Sbjct: 128 VFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYG 187

[Close]
BLAST of Cp4.1LG14g04180 vs. Swiss-Prot
Match: PPR23_ARATH (Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-11
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 1 

Query: 89  VFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPS 148
           + + L G N      ++HAH+L   L  + L+ +  ++   S  + D +  VF+ I  P+
Sbjct: 7   LLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPN 66

Query: 149 SLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWMGKCVHG 208
            L+FN+MI+ Y+  G    +++ + SM S G   D +T+  +LKS   L  +  GKCVHG
Sbjct: 67  VLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHG 126

Query: 209 LVLRAG 215
            ++R G
Sbjct: 127 ELIRTG 132

[Close]
BLAST of Cp4.1LG14g04180 vs. Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 1 

Query: 103 QQVHAHMLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPSSLLFNSMIRAYARY 162
           ++++A +++ GL  ++ + +KMV F     D+D +  +FN++S P+  L+NS+IRAY   
Sbjct: 27  KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86

Query: 163 GFAERTVATYFSMHSWGF-TGDYFTFPFVLKSSVDLLSVWMGKCVHGLVLRAG 215
                 +  Y  +    F   D FTFPF+ KS   L S ++GK VHG + + G
Sbjct: 87  SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFG 139

[Close]
BLAST of Cp4.1LG14g04180 vs. Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-10
Identity = 38/148 (25.68%), Postives = 72/148 (48.65%), Query Frame = 1 

Query: 75  LSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDI 134
           L++ D PP   Y ++ + L     L  G+Q+HAH++  GL     + + +V  Y   G +
Sbjct: 176 LASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWL 235

Query: 135 DSSVAVFNRISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSS 194
             +  VF++++    +    ++  Y + G A   +  +  + + G   D F F  VLK+ 
Sbjct: 236 VGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKAC 295

Query: 195 VDLLSVWMGKCVHGLVLRAGLQSKTQLG 223
             L  + +GK +H  V + GL+S+  +G
Sbjct: 296 ASLEELNLGKQIHACVAKLGLESEVSVG 323

[Close]
BLAST of Cp4.1LG14g04180 vs. Swiss-Prot
Match: PPR55_ARATH (Pentatricopeptide repeat-containing protein At1g22830 OS=Arabidopsis thaliana GN=PCMP-E24 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-10
Identity = 41/128 (32.03%), Postives = 65/128 (50.78%), Query Frame = 1 

Query: 83  ILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFN 142
           + S AS+     G N    GQQ+HAH +  GLE  +++  K+V FY++   +D +  +  
Sbjct: 83  LYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITE 142

Query: 143 RISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWM 202
                  L +N +I +Y R    + +V+ Y  M S G   D FT+P V+K+   LL    
Sbjct: 143 NSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAY 202

Query: 203 GKCVHGLV 211
           G+ VHG +
Sbjct: 203 GRVVHGSI 210

[Close]
BLAST of Cp4.1LG14g04180 vs. TrEMBL
Match: A0A0A0KEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430650 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 6.7e-68
Identity = 131/143 (91.61%), Postives = 136/143 (95.10%), Query Frame = 1 

Query: 74  PLSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGD 133
           PLSAP PPPILSYA VFQFLTG N+LKLG QVHAHMLLRGL+PTALVGSKMVAFYASSGD
Sbjct: 61  PLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGD 120

Query: 134 IDSSVAVFNRISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS 193
           IDSSV+VFN I EPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS
Sbjct: 121 IDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS 180

Query: 194 SVDLLSVWMGKCVHGLVLRAGLQ 217
           SV+LLSVWMGKCVHGL+LR GLQ
Sbjct: 181 SVELLSVWMGKCVHGLILRIGLQ 203

[Close]
BLAST of Cp4.1LG14g04180 vs. TrEMBL
Match: A0A0D2SZE2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G028200 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.3e-44
Identity = 96/174 (55.17%), Postives = 119/174 (68.39%), Query Frame = 1 

Query: 49  PTSVPLTSTLPLRHHPHHSNAQSRPPLSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAH 108
           P   P TSTLP    P          +S  +PPP LSYA +FQFLTGQN LKLGQQ+HAH
Sbjct: 40  PKPFPYTSTLPTLLQP----------ISDQNPPPHLSYAPLFQFLTGQNFLKLGQQIHAH 99

Query: 109 MLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPSSLLFNSMIRAYARYGFAERT 168
           M L GL+P A +G+KMVA YASSGD++S+V VF +I +P+SLL+NS+IRAY   G+  +T
Sbjct: 100 MTLHGLQPNAFLGAKMVAMYASSGDLESAVTVFRKIKDPTSLLYNSIIRAYTNNGYPLKT 159

Query: 169 VATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWMGKCVHGLVLRAGLQSKTQLG 223
           +  Y  MHS    GD FTFPFVLKS  ++L VWMG+CVHG  LR GL+    +G
Sbjct: 160 IDIYREMHSLRLKGDNFTFPFVLKSCANVLDVWMGECVHGQSLRFGLELDAYVG 203

[Close]
BLAST of Cp4.1LG14g04180 vs. TrEMBL
Match: M5X3I7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002838mg PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.1e-41
Identity = 87/148 (58.78%), Postives = 109/148 (73.65%), Query Frame = 1 

Query: 75  LSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDI 134
           L A DP  I  YA +FQ LT QNLLKLGQQVHA M LRGLEP A +G+KMVA YASS ++
Sbjct: 10  LLAQDPTCISFYAPIFQSLTSQNLLKLGQQVHAQMALRGLEPNAFLGAKMVAMYASSDNL 69

Query: 135 DSSVAVFNRISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSS 194
           DS+V +F+R++ PS+LL+NS+IRAY  YG++E+T+  Y  MH  G  GD FT+PFVLK  
Sbjct: 70  DSAVNIFHRVNNPSTLLYNSIIRAYTLYGYSEKTMEIYGQMHRLGLKGDNFTYPFVLKCC 129

Query: 195 VDLLSVWMGKCVHGLVLRAGLQSKTQLG 223
            +L S+W+GKCVH L LR GL S   +G
Sbjct: 130 ANLSSIWLGKCVHSLSLRIGLASDMYVG 157

[Close]
BLAST of Cp4.1LG14g04180 vs. TrEMBL
Match: K4B1Y4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.0e-40
Identity = 82/133 (61.65%), Postives = 101/133 (75.94%), Query Frame = 1 

Query: 82  PILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDIDSSVAVF 141
           P  +YAS+FQFL G+N +KLGQQVHAHM +RG+ P  LV +KMVA YASSG+IDS+  +F
Sbjct: 15  PPSTYASIFQFLVGKNFVKLGQQVHAHMAVRGVSPNGLVAAKMVAMYASSGEIDSASYIF 74

Query: 142 NRISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVW 201
           +  +EPSSLL+N+MIRA   YG  +RT+  +F MHS GF GD FTFPFV KS  DL  VW
Sbjct: 75  DSATEPSSLLYNAMIRALTLYGITKRTIEIFFQMHSLGFRGDNFTFPFVFKSCADLSDVW 134

Query: 202 MGKCVHGLVLRAG 215
            GKCVH L+LR+G
Sbjct: 135 CGKCVHSLILRSG 147

[Close]
BLAST of Cp4.1LG14g04180 vs. TrEMBL
Match: A0A061DZC2_THECC (Mitochondrial editing factor 21 OS=Theobroma cacao GN=TCM_006915 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.6e-39
Identity = 89/176 (50.57%), Postives = 114/176 (64.77%), Query Frame = 1 

Query: 47  SIPTSVPLTSTLPLRHHPHHSNAQSRPPLSAPDPPPILSYASVFQFLTGQNLLKLGQQVH 106
           +IP   P TSTL     P          +S  + P   SYA +FQFLT +N LKLGQQ+H
Sbjct: 38  TIPKPSPYTSTLQTLLQP----------ISNQNAPRHSSYAPLFQFLTARNCLKLGQQIH 97

Query: 107 AHMLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPSSLLFNSMIRAYARYGFAE 166
           +HM L GL+P A +G+KMVA YAS GD++S+V +FN I  P+SLL+NS+IRAY   G+  
Sbjct: 98  SHMTLHGLQPNAFLGAKMVAMYASLGDLESAVTIFNEIESPTSLLYNSIIRAYTNCGYPL 157

Query: 167 RTVATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWMGKCVHGLVLRAGLQSKTQLG 223
           +TV  Y  MH  G  GD FTFPFVLKS  ++L+ WMGKCVHG  LR G++    +G
Sbjct: 158 KTVDIYCKMHYLGLKGDNFTFPFVLKSCANVLNGWMGKCVHGQSLRFGMELDIYVG 203

[Close]
BLAST of Cp4.1LG14g04180 vs. TAIR10
Match: AT3G49142.1 (AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 56/182 (30.77%), Postives = 90/182 (49.45%), Query Frame = 1 

Query: 58  LPLRHHPHHSNAQSRPPLSAPDPPPILSYASVFQ--FLTGQNL-----LKLGQQVHAHML 117
           L L H P     QSR  +S+  P   L   S  +  FL GQ L     ++  + VH+ ++
Sbjct: 8   LHLLHFPKFRKFQSRK-VSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRII 67

Query: 118 LRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPSSLLFNSMIRAYARYGFAERTVA 177
           L  L   + +G K++  YAS  D+ S+  VF+ I E + ++ N MIR+Y   GF    V 
Sbjct: 68  LEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVK 127

Query: 178 TYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWMGKCVHGLVLRAGLQSKTQLGD-----YN 228
            + +M       D++TFP VLK+     ++ +G+ +HG   + GL S   +G+     Y 
Sbjct: 128 VFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYG 187

[Close]
BLAST of Cp4.1LG14g04180 vs. TAIR10
Match: AT1G09190.1 (AT1G09190.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 1 

Query: 89  VFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPS 148
           + + L G N      ++HAH+L   L  + L+ +  ++   S  + D +  VF+ I  P+
Sbjct: 7   LLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPN 66

Query: 149 SLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWMGKCVHG 208
            L+FN+MI+ Y+  G    +++ + SM S G   D +T+  +LKS   L  +  GKCVHG
Sbjct: 67  VLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHG 126

Query: 209 LVLRAG 215
            ++R G
Sbjct: 127 ELIRTG 132

[Close]
BLAST of Cp4.1LG14g04180 vs. TAIR10
Match: AT2G20540.1 (AT2G20540.1 mitochondrial editing factor 21)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-11
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 1 

Query: 103 QQVHAHMLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPSSLLFNSMIRAYARY 162
           ++++A +++ GL  ++ + +KMV F     D+D +  +FN++S P+  L+NS+IRAY   
Sbjct: 27  KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86

Query: 163 GFAERTVATYFSMHSWGF-TGDYFTFPFVLKSSVDLLSVWMGKCVHGLVLRAG 215
                 +  Y  +    F   D FTFPF+ KS   L S ++GK VHG + + G
Sbjct: 87  SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFG 139

[Close]
BLAST of Cp4.1LG14g04180 vs. TAIR10
Match: AT5G13270.1 (AT5G13270.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 38/148 (25.68%), Postives = 72/148 (48.65%), Query Frame = 1 

Query: 75  LSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDI 134
           L++ D PP   Y ++ + L     L  G+Q+HAH++  GL     + + +V  Y   G +
Sbjct: 176 LASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWL 235

Query: 135 DSSVAVFNRISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSS 194
             +  VF++++    +    ++  Y + G A   +  +  + + G   D F F  VLK+ 
Sbjct: 236 VGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKAC 295

Query: 195 VDLLSVWMGKCVHGLVLRAGLQSKTQLG 223
             L  + +GK +H  V + GL+S+  +G
Sbjct: 296 ASLEELNLGKQIHACVAKLGLESEVSVG 323

[Close]
BLAST of Cp4.1LG14g04180 vs. TAIR10
Match: AT1G22830.1 (AT1G22830.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-11
Identity = 41/128 (32.03%), Postives = 65/128 (50.78%), Query Frame = 1 

Query: 83  ILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFN 142
           + S AS+     G N    GQQ+HAH +  GLE  +++  K+V FY++   +D +  +  
Sbjct: 83  LYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITE 142

Query: 143 RISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWM 202
                  L +N +I +Y R    + +V+ Y  M S G   D FT+P V+K+   LL    
Sbjct: 143 NSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAY 202

Query: 203 GKCVHGLV 211
           G+ VHG +
Sbjct: 203 GRVVHGSI 210

[Close]
BLAST of Cp4.1LG14g04180 vs. NCBI nr
Match: gi|449445033|ref|XP_004140278.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 9.7e-68
Identity = 131/143 (91.61%), Postives = 136/143 (95.10%), Query Frame = 1 

Query: 74  PLSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGD 133
           PLSAP PPPILSYA VFQFLTG N+LKLG QVHAHMLLRGL+PTALVGSKMVAFYASSGD
Sbjct: 61  PLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGD 120

Query: 134 IDSSVAVFNRISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS 193
           IDSSV+VFN I EPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS
Sbjct: 121 IDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS 180

Query: 194 SVDLLSVWMGKCVHGLVLRAGLQ 217
           SV+LLSVWMGKCVHGL+LR GLQ
Sbjct: 181 SVELLSVWMGKCVHGLILRIGLQ 203

[Close]
BLAST of Cp4.1LG14g04180 vs. NCBI nr
Match: gi|659112126|ref|XP_008456075.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 3.7e-67
Identity = 130/142 (91.55%), Postives = 134/142 (94.37%), Query Frame = 1 

Query: 74  PLSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGD 133
           PLSAP PPPILSYA VFQFLTG N+LKLG QVHAHMLLRGL+PTALVGSKMVAFYASSGD
Sbjct: 61  PLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGD 120

Query: 134 IDSSVAVFNRISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS 193
           IDSSV+VFN I EPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS
Sbjct: 121 IDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS 180

Query: 194 SVDLLSVWMGKCVHGLVLRAGL 216
           S DLLSVWMGKCVHGL+LR GL
Sbjct: 181 SADLLSVWMGKCVHGLILRIGL 202

[Close]
BLAST of Cp4.1LG14g04180 vs. NCBI nr
Match: gi|823203737|ref|XP_012436245.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Gossypium raimondii])

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 96/174 (55.17%), Postives = 119/174 (68.39%), Query Frame = 1 

Query: 49  PTSVPLTSTLPLRHHPHHSNAQSRPPLSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAH 108
           P   P TSTLP    P          +S  +PPP LSYA +FQFLTGQN LKLGQQ+HAH
Sbjct: 40  PKPFPYTSTLPTLLQP----------ISDQNPPPHLSYAPLFQFLTGQNFLKLGQQIHAH 99

Query: 109 MLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPSSLLFNSMIRAYARYGFAERT 168
           M L GL+P A +G+KMVA YASSGD++S+V VF +I +P+SLL+NS+IRAY   G+  +T
Sbjct: 100 MTLHGLQPNAFLGAKMVAMYASSGDLESAVTVFRKIKDPTSLLYNSIIRAYTNNGYPLKT 159

Query: 169 VATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWMGKCVHGLVLRAGLQSKTQLG 223
           +  Y  MHS    GD FTFPFVLKS  ++L VWMG+CVHG  LR GL+    +G
Sbjct: 160 IDIYREMHSLRLKGDNFTFPFVLKSCANVLDVWMGECVHGQSLRFGLELDAYVG 203

[Close]
BLAST of Cp4.1LG14g04180 vs. NCBI nr
Match: gi|763780405|gb|KJB47476.1| (hypothetical protein B456_008G028200 [Gossypium raimondii])

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 96/174 (55.17%), Postives = 119/174 (68.39%), Query Frame = 1 

Query: 49  PTSVPLTSTLPLRHHPHHSNAQSRPPLSAPDPPPILSYASVFQFLTGQNLLKLGQQVHAH 108
           P   P TSTLP    P          +S  +PPP LSYA +FQFLTGQN LKLGQQ+HAH
Sbjct: 40  PKPFPYTSTLPTLLQP----------ISDQNPPPHLSYAPLFQFLTGQNFLKLGQQIHAH 99

Query: 109 MLLRGLEPTALVGSKMVAFYASSGDIDSSVAVFNRISEPSSLLFNSMIRAYARYGFAERT 168
           M L GL+P A +G+KMVA YASSGD++S+V VF +I +P+SLL+NS+IRAY   G+  +T
Sbjct: 100 MTLHGLQPNAFLGAKMVAMYASSGDLESAVTVFRKIKDPTSLLYNSIIRAYTNNGYPLKT 159

Query: 169 VATYFSMHSWGFTGDYFTFPFVLKSSVDLLSVWMGKCVHGLVLRAGLQSKTQLG 223
           +  Y  MHS    GD FTFPFVLKS  ++L VWMG+CVHG  LR GL+    +G
Sbjct: 160 IDIYREMHSLRLKGDNFTFPFVLKSCANVLDVWMGECVHGQSLRFGLELDAYVG 203

[Close]
BLAST of Cp4.1LG14g04180 vs. NCBI nr
Match: gi|720077886|ref|XP_010241184.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Nelumbo nucifera])

HSP 1 Score: 182.6 bits (462), Expect = 8.2e-43
Identity = 90/144 (62.50%), Postives = 112/144 (77.78%), Query Frame = 1 

Query: 79  DPPPILSYASVFQFLTGQNLLKLGQQVHAHMLLRGLEPTALVGSKMVAFYASSGDIDSSV 138
           +PP I+SYA +FQFLTG + LKLG+QVHAHM LRGL+P A +G+KMVA YASSGDIDS+ 
Sbjct: 28  NPPQIVSYAPIFQFLTGTHSLKLGKQVHAHMTLRGLQPNAFLGAKMVAMYASSGDIDSAE 87

Query: 139 AVFNRISEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVDLL 198
            VF+++S PSSLL+NS+IR Y R+G+ ERT+ TYF M+S G   DYFTFPFVLKSS +L 
Sbjct: 88  TVFDQVSFPSSLLYNSIIRGYTRFGYYERTLKTYFIMNSQGLRPDYFTFPFVLKSSAELS 147

Query: 199 SVWMGKCVHGLVLRAGLQSKTQLG 223
            +  GKCVHG  LR GL+    +G
Sbjct: 148 CLRTGKCVHGKSLRIGLEYDLYVG 171

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g04180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP271_ARATH3.7e-1130.77Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th... [more]
PPR23_ARATH3.7e-1131.75Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN... [more]
PP165_ARATH1.9e-1033.63Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN... [more]
PP378_ARATH2.4e-1025.68Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidop... [more]
PPR55_ARATH4.1e-1032.03Pentatricopeptide repeat-containing protein At1g22830 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG14g04180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEZ1_CUCSA6.7e-6891.61Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430650 PE=4 SV=1[more]
A0A0D2SZE2_GOSRA2.3e-4455.17Uncharacterized protein OS=Gossypium raimondii GN=B456_008G028200 PE=4 SV=1[more]
M5X3I7_PRUPE4.1e-4158.78Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002838mg PE=4 SV=1[more]
K4B1Y4_SOLLC2.0e-4061.65Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A061DZC2_THECC6.6e-3950.57Mitochondrial editing factor 21 OS=Theobroma cacao GN=TCM_006915 PE=4 SV=1[more]
BLAST of Cp4.1LG14g04180 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49142.12.1e-1230.77 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G09190.12.1e-1231.75 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G20540.11.0e-1133.63 mitochondrial editing factor 21[more]
AT5G13270.11.4e-1125.68 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G22830.12.3e-1132.03 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG14g04180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445033|ref|XP_004140278.1|9.7e-6891.61PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis s... [more]
gi|659112126|ref|XP_008456075.1|3.7e-6791.55PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cucumis m... [more]
gi|823203737|ref|XP_012436245.1|3.3e-4455.17PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Gossypium... [more]
gi|763780405|gb|KJB47476.1|3.3e-4455.17hypothetical protein B456_008G028200 [Gossypium raimondii][more]
gi|720077886|ref|XP_010241184.1|8.2e-4362.50PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Nelum... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g04180.1Cp4.1LG14g04180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 152..181
score: 0.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 82..215
score: 4.0
NoneNo IPR availablePANTHERPTHR24015:SF728SUBFAMILY NOT NAMEDcoord: 82..215
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g04180MELO3C019467.2Melon (DHL92) v3.6.1cpemedB234
Cp4.1LG14g04180Carg11305Silver-seed gourdcarcpeB0926
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g04180Silver-seed gourdcarcpeB0093
Cp4.1LG14g04180Cucumber (Chinese Long) v3cpecucB0247
Cp4.1LG14g04180Wax gourdcpewgoB0295
Cp4.1LG14g04180Cucumber (Gy14) v1cgycpeB0005
Cp4.1LG14g04180Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG14g04180Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g04180Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g04180Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g04180Cucurbita moschata (Rifu)cmocpeB668
Cp4.1LG14g04180Wild cucumber (PI 183967)cpecpiB208
Cp4.1LG14g04180Cucumber (Chinese Long) v2cpecuB205
Cp4.1LG14g04180Bottle gourd (USVL1VR-Ls)cpelsiB171
Cp4.1LG14g04180Bottle gourd (USVL1VR-Ls)cpelsiB177
Cp4.1LG14g04180Watermelon (Charleston Gray)cpewcgB208
Cp4.1LG14g04180Watermelon (97103) v1cpewmB228
Cp4.1LG14g04180Melon (DHL92) v3.5.1cpemeB192
Cp4.1LG14g04180Cucumber (Gy14) v2cgybcpeB317