Cp4.1LG14g01760 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG14g01760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG14 : 3403281 .. 3407259 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTCTCTCCCGCAACTTCTCCACAGTCTGCAAGCTTAGTCATTTACAGCCCAGCCAGACACAGGCGACGTCAAATTTCATACCCTTTTCTCAGCTTCAACAGCAGCGGAAGCTCTTAGAATGGCGACTCATAAGTATTCTCCACGACTGCACGGACTTTTCTCAAATCAAGCAAGTTCATGGCCAAATCATTTGCAATGGCTTGAGTCAATGCTCTTACGTCCTCACCAAACTCATTCGCATGCTTTCGAAGGTAGATGTCCCAATGGATTGCTACCCACGTCTGGTTTTTGGACAGGTTAATTACCCCAACCCCTTTCTTTGGACTGCCATGATTCGTGGGTATGCCCTTCAAGGACCCTTCACTGAGTCTATTAACTTGTATACTAACATGAGGAGAAATGGCGTCAGTCCTGTTTCGTTTACGTTTTCTGCGCTTTTTAAGGCTTGTGGGGCTTCTCTTAATTTGGATTTGGGTAGGCAGGTGCATGCTCAGACGATTTTGATTGGGGGTTTCGCTTCTGATTTATATGTTGGTAATACGATGATTGATATGTATGTGAAATGTGGGGTTTTGGGTTGTGGGCGGAAGGTGTTCGATGAAATGTCTGAGAGAGATGTGGTTTCATGGACTGAGCTGATTGTTGCGTATGCGAAGTTTGGGGACATGGAATCTGCTAGGGGCCTGTTTGATGAATTGCCTTTGAAGGATATGGTGGCATGGACTGCAATGGTCACTGGTTATGCCCAAAATGCTAGACCAAAGGAGGCATTGGAGTATTTTCAGAAGATGCAGGATGTCGGTATCGAGACCGATGAAGTTACACTTGTTGGTGTCATCTCAGCCTGTGCACAATTGGGTGCAGTTAAATATGCTAACTGGATTAGAGACATTGCTGAAAGATCAGGCTTTGGATCTTATGAAAATGTAATGGTGGGATCTGCTCTTATCGATATGTATTCTAAATGTGGCAGTCCTGATGAGGCATACAAAGTTTTTGAAGGAATGAAGGAAAGAAATGTGTTCTCGTATAGTTCAATGATTGTGGGATACGCTATGCATGGTCGCGCTCATTCCGCTTTGCAGTTGTTCCATGAGATGTTAAAGACTGAGATCACGCCAAATAAGGTTACTTTCATTGGGGTGCTTTCAGCGTGTAGCCATGCCGGTATGGTCGAACAAGGTCGACAGCTATTTGCTAAGATGGAAAAGTATTTTAACGTAACGCCTTCACCCGATCATTATGCGTGTATGGTTGATCTCCTTGGTCGAGGTGGATGTTTGGAAGAAGCTCTTGAACTCATTGAAACCATGCCAATGGAACCCCATGGAGGTGTATGGGGAGCACTGCTTGGAGCTTGCCGCATCCATGGGAATCCCGACATTGCTCGGGTAGCTGCCGATCAATTATTCAAGCTAGAACCAGATGGTATAGGGAACTACATTCTGCTATCGAACATATATGCATCAGCAGGAAGATGGGACGAGGTGTCGAAATTACGGAAAGTGATTCGAGCCAAAGGCTTAAAGAAGAATCCTGGCTGCAGCTGGTTTGAAGGAAAGAAAGGGGACATTCACGAATTCTTTGCGGATGATGCAACCCATCAACGATCAAGTGAGATTAGACAAGCCTTGAGGCAACTCCTTGAGAGATTAAGAGCCCATGGATACAAGCCAAACTTGAGCTCTGTGCCTTATGACTTGACCGATGACGAAAAGGAACGAATACTGATGAGTCATAGTGAGAAGCTGGCGTTGGCATACGGGCTGTTATGTACTGAGGCAGGGGAAACCATTACGATCATGAAAAACCTTAGGATATGCGAGGATTGCCACAATGTCATGTGTGCTGCATCTGAAATCACTGGAAGGGAGATCATTATAAGGGATAACATGAGATTTCATCACTTCCACAATGGGACTTGTTCTTGTGGTAACTTTTGGTGATCCAAGCCAGAGCCCTCTTAATTCCTTGCGCTTTCATCGCCTGCTAATGCTTATTGTTGATCAATCATCAAGTTCCGACAGGTATCAGAAATTCTTCTTCTTCTTGTTCTTCAATTGTAGTTGGCTTGTTGTTGAAATCCGTTCAGTTTCCTCTGTCACTCAAAAATTTTGTATTTTATATGGTGAAAATTAAGGAATGTGAAAACACGACGTGTAGCCTTAGTACCGAAAGAAATTTAAATCTCAATGGACTCAGTCTGTAAGACGAATTGGCTTTATGTACCATGTACCAAAAACAAAGGATGGTTTGGATGGTTTGGATGGTTTAGAGAAGAGAGTCCACATTGGCTGATGAATAGGGTCGATCATCCGTTCATATCAGTTCATAGATAAGGAATATATCTCTAGGTACATTTGAGAAAATTAAAAGAAATACCATGAAAGCTTATACTCATGGACAATATCATATAATTACAGAGAGTCGCGATTCCTAGCATAGTATTAGAATTATACTCCTTTGAGAAAATTAAAAGAAATACCATGAAAGCTTATACTCATGGACAAATATCATATAATGATAGAGAGTCGCGATTCCTAGCATAGTATTAGAATTATACTCCTAAGTTAGTCATGTCAATAGAATCTCGAAGGTGTAGTCAAAAGTAATTCAAGTATCAGACGAAAGGTATACTCCGGACACTTTAGAAGAAGTCGAGCCTCGATTAAGGAGAGGATGTTCGAAAACTCCTCAATGATTACTTTGTTTGAGAGGAAGATTGTTACTAAGAGAAGCATTTCATATATTGACTAATTAAGAAGTTGATCGAGATGGATCTTGTAAATCTTTTTCGACTTTTTATCTTTTTTTTATCTTTTTTTTATGTTCACTTGATTCCTTCCCATTATTCAGTTCATATCTTTTTAGAATGAAGTTTGATCCCATTAATTCAGTTCATATCTTTTTAGGATGAAGTTTTTGATCAAAATAACTATCATGATGTGATTATGGCCTCTTCTCTTTGAGTTCATATTTGGTTAACATTGTTGTGTTCTACATTCACTTCACGTTAAACTTGAGACCGTGTAATCCATCAGGGGAAGGCGTCTTGTACGACATGTGGCATTCGAATCCACCGTAGCATGCAGGGAGACGTCGGTAATGGAGATTAGCTTGCACTTCAGTTTGCCAAATGAAGTGTTCTTGGTGGATGTTACCAGGTTTGAGACCCTGTAAATCTTTTAAGTTTTCGATATTTTTTTAAGTATTTATTGAAACTTCTTACTATTATTAGCATAACTTCATAATTTCACGTTCGAAGTAGACAAAAAACAGCGACAAAACACATAAATTACTTAATAATACACAGACACTCACGACCCTTGATCATTATTTAGTCACATACAGGCAGGCAGCTCTACAAGCTAACAAGCCGCCATGTCCTTTGCTGCTTCTCTACTAATTAAACACACAGCCTCCTCATTGGTTTCCTCCCGGAAGCTTCTCCTTAATCTTCTCCATCATCCCTTTCTTCTCATGACGCTCCCCCTGCTCCCCCGTCGTGTACCCGACCGATCCCCCCGTCGATACCGGCTTATCATGATGAAACATTCCACCCCTCTGCTGCTGCTGCTGCCCTCCGCCGCCTCCTTCATACATTCCAGTGCCAGTGCCTGTGCCAGTGCGTCCAGTTGGGTCACCGACACCGTGCTGGTCGGTCCGATGAATTGGGTTGCCATACTGGTCGGTCCCACGGAATTCGTCCGTCCGGCGAAGTGGGTCGACGTGCTGTGCGGTGTCGGAAATGACGTTGCCGTATTCATCGGTCTGGCGAATTGGGTTGCCGTACTGGTCGGCGCCAGATTGTGCGCTGTACTGGTTCTGGTAATGTGCCATTGTTTTTCTTTGAGATGATGCGTTTGGGAATGAGGGGATTTGTTCAATCAACAATAAATAGTGACGGAATTTTGCGGATAAGATTTTGACAAGGCATTGGGTTTGCCACGTGGCGATTTTGTGGACACGTGG

mRNA sequence

ATGATTGTCTGCAAGCTTAGTCATTTACAGCCCAGCCAGACACAGGCGACGTCAAATTTCATACCCTTTTCTCAGCTTCAACAGCAGCGGAAGCTCTTAGAATGGCGACTCATAAGTATTCTCCACGACTGCACGGACTTTTCTCAAATCAAGCAAGTTCATGGCCAAATCATTTGCAATGGCTTGAGTCAATGCTCTTACGTCCTCACCAAACTCATTCGCATGCTTTCGAAGGTAGATGTCCCAATGGATTGCTACCCACGTCTGGTTTTTGGACAGGTTAATTACCCCAACCCCTTTCTTTGGACTGCCATGATTCGTGGGTATGCCCTTCAAGGACCCTTCACTGAGTCTATTAACTTGTATACTAACATGAGGAGAAATGGCGTCAGTCCTGTTTCGTTTACGTTTTCTGCGCTTTTTAAGGCTTGTGGGGCTTCTCTTAATTTGGATTTGGGTAGGCAGGATGTCGGTATCGAGACCGATGAAGTTACACTTGTTGGTGTCATCTCAGCCTGTGCACAATTGGGTGCAGCAGGCAGCTCTACAAGCTAACAAGCCGCCATGTCCTTTGCTGCTTCTCTACTAATTAAACACACAGCCTCCTCATTGGTTTCCTCCCGGAAGCTTCTCCTTAATCTTCTCCATCATCCCTTTCTTCTCATGACGCTCCCCCTGCTCCCCCGTCGTGTACCCGACCGATCCCCCCGTCGATACCGGCTTATCATGATGAAACATTCCACCCCTCTGCTGCTGCTGCTGCCCTCCGCCGCCTCCTTCATACATTCCAGTGCCAGTGCCTGTGCCAGTGCGTCCAGTTGGGTCACCGACACCGTGCTGGTCGGTCCGATGAATTGGGTTGCCATACTGGTCGGTCCCACGGAATTCGTCCGTCCGGCGAAGTGGGTCGACGTGCTGTGCGGTGTCGGAAATGACGTTGCCGTATTCATCGGTCTGGCGAATTGGGTTGCCGTACTGGTCGGCGCCAGATTGTGCGCTGTACTGGTTCTGGTAATGTGCCATTGTTTTTCTTTGAGATGATGCGTTTGGGAATGAGGGGATTTGTTCAATCAACAATAAATAGTGACGGAATTTTGCGGATAAGATTTTGACAAGGCATTGGGTTTGCCACGTGGCGATTTTGTGGACACGTGG

Coding sequence (CDS)

ATGATTGTCTGCAAGCTTAGTCATTTACAGCCCAGCCAGACACAGGCGACGTCAAATTTCATACCCTTTTCTCAGCTTCAACAGCAGCGGAAGCTCTTAGAATGGCGACTCATAAGTATTCTCCACGACTGCACGGACTTTTCTCAAATCAAGCAAGTTCATGGCCAAATCATTTGCAATGGCTTGAGTCAATGCTCTTACGTCCTCACCAAACTCATTCGCATGCTTTCGAAGGTAGATGTCCCAATGGATTGCTACCCACGTCTGGTTTTTGGACAGGTTAATTACCCCAACCCCTTTCTTTGGACTGCCATGATTCGTGGGTATGCCCTTCAAGGACCCTTCACTGAGTCTATTAACTTGTATACTAACATGAGGAGAAATGGCGTCAGTCCTGTTTCGTTTACGTTTTCTGCGCTTTTTAAGGCTTGTGGGGCTTCTCTTAATTTGGATTTGGGTAGGCAGGATGTCGGTATCGAGACCGATGAAGTTACACTTGTTGGTGTCATCTCAGCCTGTGCACAATTGGGTGCAGCAGGCAGCTCTACAAGCTAA

Protein sequence

MIVCKLSHLQPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFTFSALFKACGASLNLDLGRQDVGIETDEVTLVGVISACAQLGAAGSSTS
BLAST of Cp4.1LG14g01760 vs. Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.8e-37
Identity = 75/141 (53.19%), Postives = 101/141 (71.63%), Query Frame = 1

Query: 15  QATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIR 74
           + ++N   FS++  Q++LL   LIS L DC + +QIKQ+HG ++  GL Q  Y+LTKLIR
Sbjct: 30  RTSNNSGTFSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIR 89

Query: 75  MLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVS 134
            L+K+ VPMD Y R V   V + NPFLWTA+IRGYA++G F E+I +Y  MR+  ++PVS
Sbjct: 90  TLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVS 149

Query: 135 FTFSALFKACGASLNLDLGRQ 156
           FTFSAL KACG   +L+LGRQ
Sbjct: 150 FTFSALLKACGTMKDLNLGRQ 170

BLAST of Cp4.1LG14g01760 vs. Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-15
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 1

Query: 39  SILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIRMLSKV-DVPMDCYPRLVFGQVNYP 98
           S++   T  +Q+KQ+H +++  GL    +++TKLI   S   D+    + R VF  +  P
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDIT---FARQVFDDLPRP 85

Query: 99  NPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFTFSALFKACGASLNLDLGR--- 158
             F W A+IRGY+    F +++ +Y+NM+   VSP SFTF  L KAC    +L +GR   
Sbjct: 86  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 145

Query: 159 ---QDVGIETD---EVTLVGVISACAQLGAA 180
                +G + D   +  L+ + + C +LG+A
Sbjct: 146 AQVFRLGFDADVFVQNGLIALYAKCRRLGSA 173

BLAST of Cp4.1LG14g01760 vs. Swiss-Prot
Match: PP188_ARATH (Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-12
Identity = 36/112 (32.14%), Postives = 57/112 (50.89%), Query Frame = 1

Query: 44  CTDFSQIKQVHGQIICNGLSQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWT 103
           C+    + Q+HGQI  + L   S+++++L+R+ S        + R +    +   P  W 
Sbjct: 23  CSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPSTWN 82

Query: 104 AMIRGYALQGPFTESINLYTNMRRNGVSPVSFTFSALFKACGASLNLDLGRQ 156
            + RGY+      ESI +Y+ M+R G+ P   TF  L KAC + L L  GRQ
Sbjct: 83  MLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQ 134

BLAST of Cp4.1LG14g01760 vs. Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-12
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 1

Query: 37  LISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNY 96
           LIS+L  C + + +  +H +II     Q ++V+ +LIR+ S +D     Y   VF  V+ 
Sbjct: 32  LISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYD--VFSYVSN 91

Query: 97  PNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFTFSALFKAC 145
           PN +L+TAMI G+   G   + ++LY  M  N V P ++  +++ KAC
Sbjct: 92  PNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC 137

BLAST of Cp4.1LG14g01760 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11
Identity = 49/167 (29.34%), Postives = 76/167 (45.51%), Query Frame = 1

Query: 19  NFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIR--ML 78
           +F+P S       +     +S+LH+C     ++ +H Q+I  GL   +Y L+KLI   +L
Sbjct: 18  HFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCIL 77

Query: 79  SKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFT 138
           S     +  Y   VF  +  PN  +W  M RG+AL      ++ LY  M   G+ P S+T
Sbjct: 78  SPHFEGLP-YAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 137

Query: 139 FSALFKACGASLNLDLGRQ------DVGIETDEVTLVGVISACAQLG 178
           F  + K+C  S     G+Q       +G + D      +IS   Q G
Sbjct: 138 FPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNG 183

BLAST of Cp4.1LG14g01760 vs. TrEMBL
Match: A0A0A0KUQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G045030 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.0e-64
Identity = 124/153 (81.05%), Postives = 133/153 (86.93%), Query Frame = 1

Query: 3   VCKLSHLQPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGL 62
           V KLSHLQ  QT+ + NFIPF QLQ QRKLLEWRL+SILHDCT FSQIKQVH  II NGL
Sbjct: 11  VSKLSHLQNLQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGL 70

Query: 63  SQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLY 122
           SQCSYVLTKLIRML+KVDVPM  YP LVFGQVNYPNPFLWTAMIRGYALQG  +ES N Y
Sbjct: 71  SQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFY 130

Query: 123 TNMRRNGVSPVSFTFSALFKACGASLNLDLGRQ 156
           T MRR+GV PVSFTFSALFKACGA+LN+DLG+Q
Sbjct: 131 TRMRRDGVGPVSFTFSALFKACGAALNMDLGKQ 163

BLAST of Cp4.1LG14g01760 vs. TrEMBL
Match: M5VV81_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002597mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 94/147 (63.95%), Postives = 114/147 (77.55%), Query Frame = 1

Query: 9   LQPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYV 68
           L   Q Q T  FIPFS+ QQ+RKLLE +LIS L  C + SQ+K+VH  ++ +GLSQC YV
Sbjct: 21  LHQHQPQPTRFFIPFSEFQQKRKLLEHKLISDLDGCDNLSQVKEVHAHLLRHGLSQCCYV 80

Query: 69  LTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRN 128
           LTKL+R L+K+ VP+D YPRLVF QV YPNPFLWTAMIRGY +QGP +E++N YT MR  
Sbjct: 81  LTKLVRTLTKLGVPVDAYPRLVFVQVKYPNPFLWTAMIRGYTVQGPISEALNFYTCMRSA 140

Query: 129 GVSPVSFTFSALFKACGASLNLDLGRQ 156
           G  PVSFTFSALFKACG  L+++LGRQ
Sbjct: 141 GTGPVSFTFSALFKACGDVLDVNLGRQ 167

BLAST of Cp4.1LG14g01760 vs. TrEMBL
Match: F6GWS8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02490 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 91/139 (65.47%), Postives = 114/139 (82.01%), Query Frame = 1

Query: 17  TSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIRML 76
           T +FIPFS ++Q++K+LE RL+S+LH CT  +Q+KQVH  I   GL QC +VL KL+R L
Sbjct: 23  TQSFIPFS-VRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTL 82

Query: 77  SKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFT 136
           +K+DVPMD YPRLVF QV YPNPFLWTA+IRGYALQGPF ES+ LY +MRR G+ PVSFT
Sbjct: 83  TKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFT 142

Query: 137 FSALFKACGASLNLDLGRQ 156
           F+AL KAC A+L+++LGRQ
Sbjct: 143 FTALLKACSAALDVNLGRQ 160

BLAST of Cp4.1LG14g01760 vs. TrEMBL
Match: A0A061DFG9_THECC (Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_000299 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.2e-45
Identity = 92/148 (62.16%), Postives = 110/148 (74.32%), Query Frame = 1

Query: 8   HLQPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSY 67
           HLQ  Q+Q T  FIPFSQLQ QR LLE +LIS L+ CT  +Q KQ H  II  GL QC Y
Sbjct: 24  HLQQIQSQTTQPFIPFSQLQNQRNLLESQLISTLNGCTSLTQFKQTHAYIIRKGLDQCCY 83

Query: 68  VLTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRR 127
           +L KL+R L+K+ +PMD Y +LVF QV YPNPFLWTA+IRGYALQG   ES+++Y+ MR 
Sbjct: 84  ILAKLVRNLTKMGIPMDNYAKLVFDQVEYPNPFLWTALIRGYALQGHVKESVSVYSCMRE 143

Query: 128 NGVSPVSFTFSALFKACGASLNLDLGRQ 156
            G  PVSFTFSALFKAC   L+++LGRQ
Sbjct: 144 EGSLPVSFTFSALFKACCTVLDVNLGRQ 171

BLAST of Cp4.1LG14g01760 vs. TrEMBL
Match: A0A0D2NUT2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G012700 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.4e-42
Identity = 87/146 (59.59%), Postives = 109/146 (74.66%), Query Frame = 1

Query: 10  QPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVL 69
           Q  Q+Q T  FIPFSQ Q QR LLE +LIS L+ CT  +QI+Q+H +I+  G  QC YVL
Sbjct: 26  QQIQSQTTPPFIPFSQRQNQRSLLESQLISALNCCTSLTQIQQIHARILRKGFEQCCYVL 85

Query: 70  TKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRNG 129
           TKLIR+L+K+++PMD Y +LVF QV  PNPFL TA+IRGY LQG   ES+ +Y+ MR+  
Sbjct: 86  TKLIRILTKMEIPMDSYAKLVFNQVENPNPFLCTALIRGYCLQGLVKESVFVYSEMRKKS 145

Query: 130 VSPVSFTFSALFKACGASLNLDLGRQ 156
           V P+SFTFSALFKACG   ++DLGRQ
Sbjct: 146 VLPISFTFSALFKACGVVNDVDLGRQ 171

BLAST of Cp4.1LG14g01760 vs. TAIR10
Match: AT5G44230.1 (AT5G44230.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 155.2 bits (391), Expect = 3.8e-38
Identity = 75/141 (53.19%), Postives = 101/141 (71.63%), Query Frame = 1

Query: 15  QATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIR 74
           + ++N   FS++  Q++LL   LIS L DC + +QIKQ+HG ++  GL Q  Y+LTKLIR
Sbjct: 30  RTSNNSGTFSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIR 89

Query: 75  MLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVS 134
            L+K+ VPMD Y R V   V + NPFLWTA+IRGYA++G F E+I +Y  MR+  ++PVS
Sbjct: 90  TLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVS 149

Query: 135 FTFSALFKACGASLNLDLGRQ 156
           FTFSAL KACG   +L+LGRQ
Sbjct: 150 FTFSALLKACGTMKDLNLGRQ 170

BLAST of Cp4.1LG14g01760 vs. TAIR10
Match: AT3G12770.1 (AT3G12770.1 mitochondrial editing factor 22)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-16
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 1

Query: 39  SILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIRMLSKV-DVPMDCYPRLVFGQVNYP 98
           S++   T  +Q+KQ+H +++  GL    +++TKLI   S   D+    + R VF  +  P
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDIT---FARQVFDDLPRP 85

Query: 99  NPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFTFSALFKACGASLNLDLGR--- 158
             F W A+IRGY+    F +++ +Y+NM+   VSP SFTF  L KAC    +L +GR   
Sbjct: 86  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 145

Query: 159 ---QDVGIETD---EVTLVGVISACAQLGAA 180
                +G + D   +  L+ + + C +LG+A
Sbjct: 146 AQVFRLGFDADVFVQNGLIALYAKCRRLGSA 173

BLAST of Cp4.1LG14g01760 vs. TAIR10
Match: AT2G36730.1 (AT2G36730.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-13
Identity = 36/112 (32.14%), Postives = 57/112 (50.89%), Query Frame = 1

Query: 44  CTDFSQIKQVHGQIICNGLSQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWT 103
           C+    + Q+HGQI  + L   S+++++L+R+ S        + R +    +   P  W 
Sbjct: 23  CSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPSTWN 82

Query: 104 AMIRGYALQGPFTESINLYTNMRRNGVSPVSFTFSALFKACGASLNLDLGRQ 156
            + RGY+      ESI +Y+ M+R G+ P   TF  L KAC + L L  GRQ
Sbjct: 83  MLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQ 134

BLAST of Cp4.1LG14g01760 vs. TAIR10
Match: AT5G59200.1 (AT5G59200.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-13
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 1

Query: 37  LISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNY 96
           LIS+L  C + + +  +H +II     Q ++V+ +LIR+ S +D     Y   VF  V+ 
Sbjct: 32  LISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYD--VFSYVSN 91

Query: 97  PNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFTFSALFKAC 145
           PN +L+TAMI G+   G   + ++LY  M  N V P ++  +++ KAC
Sbjct: 92  PNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC 137

BLAST of Cp4.1LG14g01760 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 49/167 (29.34%), Postives = 76/167 (45.51%), Query Frame = 1

Query: 19  NFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIR--ML 78
           +F+P S       +     +S+LH+C     ++ +H Q+I  GL   +Y L+KLI   +L
Sbjct: 18  HFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCIL 77

Query: 79  SKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFT 138
           S     +  Y   VF  +  PN  +W  M RG+AL      ++ LY  M   G+ P S+T
Sbjct: 78  SPHFEGLP-YAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 137

Query: 139 FSALFKACGASLNLDLGRQ------DVGIETDEVTLVGVISACAQLG 178
           F  + K+C  S     G+Q       +G + D      +IS   Q G
Sbjct: 138 FPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNG 183

BLAST of Cp4.1LG14g01760 vs. NCBI nr
Match: gi|659102402|ref|XP_008452110.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 1.0e-64
Identity = 126/153 (82.35%), Postives = 133/153 (86.93%), Query Frame = 1

Query: 3   VCKLSHLQPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGL 62
           V KLSHLQ  QT A+ N IPF QLQ QRKLLEWRL+SILHDCT FSQIKQVHG II NGL
Sbjct: 24  VSKLSHLQNLQTPASPNIIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHGHIIRNGL 83

Query: 63  SQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLY 122
           SQCSYVLTKLIRML+KVDVPM  YP LVFGQVNYPNPFLWTAMIRGYALQG  +ES N Y
Sbjct: 84  SQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLVSESTNFY 143

Query: 123 TNMRRNGVSPVSFTFSALFKACGASLNLDLGRQ 156
           T MRR+GV PVSFTFSALFKACGASLN+DLG+Q
Sbjct: 144 TRMRRDGVGPVSFTFSALFKACGASLNMDLGKQ 176

BLAST of Cp4.1LG14g01760 vs. NCBI nr
Match: gi|449457516|ref|XP_004146494.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 2.9e-64
Identity = 124/153 (81.05%), Postives = 133/153 (86.93%), Query Frame = 1

Query: 3   VCKLSHLQPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGL 62
           V KLSHLQ  QT+ + NFIPF QLQ QRKLLEWRL+SILHDCT FSQIKQVH  II NGL
Sbjct: 11  VSKLSHLQNLQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGL 70

Query: 63  SQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLY 122
           SQCSYVLTKLIRML+KVDVPM  YP LVFGQVNYPNPFLWTAMIRGYALQG  +ES N Y
Sbjct: 71  SQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFY 130

Query: 123 TNMRRNGVSPVSFTFSALFKACGASLNLDLGRQ 156
           T MRR+GV PVSFTFSALFKACGA+LN+DLG+Q
Sbjct: 131 TRMRRDGVGPVSFTFSALFKACGAALNMDLGKQ 163

BLAST of Cp4.1LG14g01760 vs. NCBI nr
Match: gi|645273140|ref|XP_008241735.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Prunus mume])

HSP 1 Score: 198.7 bits (504), Expect = 8.6e-48
Identity = 95/147 (64.63%), Postives = 115/147 (78.23%), Query Frame = 1

Query: 9   LQPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYV 68
           L   Q Q T  FIPFS+ QQ+RKLLE +LIS L  C + SQ+K+VH  ++ +GLSQC YV
Sbjct: 21  LHQHQPQPTRFFIPFSEFQQKRKLLEHKLISDLDGCANLSQVKEVHAHLLRHGLSQCCYV 80

Query: 69  LTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRN 128
           LTKL+R L+K+ VP+D YPRLVF QV YPNPFLWTAMIRGY +QGP +E++N YT MRR 
Sbjct: 81  LTKLVRTLTKLGVPVDAYPRLVFLQVKYPNPFLWTAMIRGYTVQGPISEALNFYTCMRRA 140

Query: 129 GVSPVSFTFSALFKACGASLNLDLGRQ 156
           G  PVSFTFSALFKACG  L+++LGRQ
Sbjct: 141 GTGPVSFTFSALFKACGDVLDVNLGRQ 167

BLAST of Cp4.1LG14g01760 vs. NCBI nr
Match: gi|225431281|ref|XP_002268784.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Vitis vinifera])

HSP 1 Score: 196.4 bits (498), Expect = 4.3e-47
Identity = 91/139 (65.47%), Postives = 114/139 (82.01%), Query Frame = 1

Query: 17  TSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIRML 76
           T +FIPFS ++Q++K+LE RL+S+LH CT  +Q+KQVH  I   GL QC +VL KL+R L
Sbjct: 23  TQSFIPFS-VRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTL 82

Query: 77  SKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFT 136
           +K+DVPMD YPRLVF QV YPNPFLWTA+IRGYALQGPF ES+ LY +MRR G+ PVSFT
Sbjct: 83  TKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFT 142

Query: 137 FSALFKACGASLNLDLGRQ 156
           F+AL KAC A+L+++LGRQ
Sbjct: 143 FTALLKACSAALDVNLGRQ 160

BLAST of Cp4.1LG14g01760 vs. NCBI nr
Match: gi|595814629|ref|XP_007203772.1| (hypothetical protein PRUPE_ppa002597mg [Prunus persica])

HSP 1 Score: 196.4 bits (498), Expect = 4.3e-47
Identity = 94/147 (63.95%), Postives = 114/147 (77.55%), Query Frame = 1

Query: 9   LQPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYV 68
           L   Q Q T  FIPFS+ QQ+RKLLE +LIS L  C + SQ+K+VH  ++ +GLSQC YV
Sbjct: 21  LHQHQPQPTRFFIPFSEFQQKRKLLEHKLISDLDGCDNLSQVKEVHAHLLRHGLSQCCYV 80

Query: 69  LTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRN 128
           LTKL+R L+K+ VP+D YPRLVF QV YPNPFLWTAMIRGY +QGP +E++N YT MR  
Sbjct: 81  LTKLVRTLTKLGVPVDAYPRLVFVQVKYPNPFLWTAMIRGYTVQGPISEALNFYTCMRSA 140

Query: 129 GVSPVSFTFSALFKACGASLNLDLGRQ 156
           G  PVSFTFSALFKACG  L+++LGRQ
Sbjct: 141 GTGPVSFTFSALFKACGDVLDVNLGRQ 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP417_ARATH6.8e-3753.19Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN... [more]
PP224_ARATH4.3e-1533.11Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN... [more]
PP188_ARATH5.8e-1232.14Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN... [more]
PP435_ARATH9.9e-1234.26Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS... [more]
PPR21_ARATH3.8e-1129.34Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A0A0KUQ8_CUCSA2.0e-6481.05Uncharacterized protein OS=Cucumis sativus GN=Csa_4G045030 PE=4 SV=1[more]
M5VV81_PRUPE3.0e-4763.95Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002597mg PE=4 SV=1[more]
F6GWS8_VITVI3.0e-4765.47Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02490 PE=4 SV=... [more]
A0A061DFG9_THECC6.2e-4562.16Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_000... [more]
A0A0D2NUT2_GOSRA6.4e-4259.59Uncharacterized protein OS=Gossypium raimondii GN=B456_003G012700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G44230.13.8e-3853.19 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G12770.12.4e-1633.11 mitochondrial editing factor 22[more]
AT2G36730.13.3e-1332.14 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G59200.15.6e-1334.26 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G08070.12.1e-1229.34 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659102402|ref|XP_008452110.1|1.0e-6482.35PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Cucumis melo][more]
gi|449457516|ref|XP_004146494.1|2.9e-6481.05PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Cucumis sativu... [more]
gi|645273140|ref|XP_008241735.1|8.6e-4864.63PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Prunus mume][more]
gi|225431281|ref|XP_002268784.1|4.3e-4765.47PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Vitis vinifera... [more]
gi|595814629|ref|XP_007203772.1|4.3e-4763.95hypothetical protein PRUPE_ppa002597mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g01760.1Cp4.1LG14g01760.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 97..144
score: 8.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 101..132
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 98..132
score: 11
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 10..179
score: 1.6
NoneNo IPR availablePANTHERPTHR24015:SF264SUBFAMILY NOT NAMEDcoord: 10..179
score: 1.6

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g01760CmoCh16G006900Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g01760CsaV3_4G005450Cucumber (Chinese Long) v3cpecucB0266
Cp4.1LG14g01760Bhi01G001876Wax gourdcpewgoB0289
Cp4.1LG14g01760CsGy4G005200Cucumber (Gy14) v2cgybcpeB487
Cp4.1LG14g01760Carg05753Silver-seed gourdcarcpeB1414
The following gene(s) are paralogous to this gene:

None