Cp4.1LG14g01260 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g01260
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description50S ribosomal protein L23
LocationCp4.1LG14 : 3859684 .. 3860332 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCAGCTTCCAAAATCGAAATCAAACGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGTCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTTCAGCATTGTTGAGGAAGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTGGAATTCAAATCTTACAAGGGTTTTGCTAATAGAGGCCGCCGACAAACTGGCAGTGCTGAAACTATTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGTGAAGAAACGTATCCCAGTTACTTCTTAATTGTGATCTGTTTTGGATTTTCTTCTTCTTCTAAACGATAATAGTGTAATAGGTTGATGAGCTTAATGATAAATGTTTGATTTTCTAATTATGAAATGAACTTGTTGGCCCTCTTATGGGTTGTTTTGCAGGAGGAAGTTCTGTTCTGTTGCTTGA

mRNA sequence

ATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCAGCTTCCAAAATCGAAATCAAACGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGTCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTTCAGCATTGTTGAGGAAGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTGGAATTCAAATCTTACAAGGGTTTTGCTAATAGAGGCCGCCGACAAACTGGCAGTGCTGAAACTATTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGAGGAAGTTCTGTTCTGTTGCTTGA

Coding sequence (CDS)

ATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCAGCTTCCAAAATCGAAATCAAACGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGTCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTTCAGCATTGTTGAGGAAGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTGGAATTCAAATCTTACAAGGGTTTTGCTAATAGAGGCCGCCGACAAACTGGCAGTGCTGAAACTATTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGAGGAAGTTCTGTTCTGTTGCTTGA

Protein sequence

MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKSYKGFANRGRRQTGSAETIEPSTKFPWSSMRSGRRKFCSVA
Homology
[Close]
BLAST of Cp4.1LG14g01260 vs. Swiss-Prot
Match: RL23_METCA (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rplW PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1 

Query: 10 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 69
          +   +  P+ASK++IK  +E ++G +VD VR LN+ GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]
BLAST of Cp4.1LG14g01260 vs. Swiss-Prot
Match: RL23_AERHH (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 

Query: 11 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 70
          I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]
BLAST of Cp4.1LG14g01260 vs. Swiss-Prot
Match: RL23_HAES1 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-06
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 6  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDY 65
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ + GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 66 KKAYVTLRNPLSI 75
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]
BLAST of Cp4.1LG14g01260 vs. Swiss-Prot
Match: RL23_AERS4 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 

Query: 11 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 70
          I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]
BLAST of Cp4.1LG14g01260 vs. Swiss-Prot
Match: RL23_ALKEH (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 

Query: 10 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL 69
          E+  K    A K EI++ +E L+  +V  VRT+ M GK+K+ G L   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

[Close]
BLAST of Cp4.1LG14g01260 vs. TrEMBL
Match: A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.0e-71
Identity = 139/154 (90.26%), Postives = 149/154 (96.75%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNM+GKKKKRGG+LIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSK SIVEEGEAK+HWLHEKEPV  K+
Sbjct: 81  YKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKT 140

Query: 121 YKGFANRGRRQT-GSAETIEPSTKFPWSSMRSGR 154
           YKGFA+RGRR++ G AET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]
BLAST of Cp4.1LG14g01260 vs. TrEMBL
Match: A5BVA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.7e-54
Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVRTLNM+GKKKKRGGLLIAKPD
Sbjct: 330 MPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGGLLIAKPD 389

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSK SIVEEGEAK HWL  K+   F+ 
Sbjct: 390 YKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEGEAKSHWLDGKDGDRFRP 449

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K  A RGR   G A     + KFPWS MR+ R
Sbjct: 450 EKSSAERGRGGRGGAAA--AAAKFPWSGMRASR 480

[Close]
BLAST of Cp4.1LG14g01260 vs. TrEMBL
Match: D7T5V5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.9e-54
Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVRTLNM+GKKKKRGGLLIAKPD
Sbjct: 21  MPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSK SIVEEGEAK HWL  K+   F+ 
Sbjct: 81  YKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEGEAKSHWLDGKDGDRFRP 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K  A RGR   G A     + KFPWS MR+ R
Sbjct: 141 EKSSAERGRGGRGGAAA---AAKFPWSGMRASR 170

[Close]
BLAST of Cp4.1LG14g01260 vs. TrEMBL
Match: A0A067LED8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.9e-52
Identity = 110/154 (71.43%), Postives = 125/154 (81.17%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPT+FTNI EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGG+L+AKPD
Sbjct: 21  MPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGILLAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLS+SPD+YP+RIIEE+K  MNKQ + SIVE+GE K+HWL  K+     S
Sbjct: 81  YKKAYVTLRNPLSVSPDLYPLRIIEEEKERMNKQRRSSIVEDGEGKKHWLDGKKEERVGS 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGRR 155
            KG   R R + G  +    + KFPWSSMRS  R
Sbjct: 141 EKG---RRRDRGGVGDFTVENAKFPWSSMRSASR 171

[Close]
BLAST of Cp4.1LG14g01260 vs. TrEMBL
Match: A0A059AL68_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-51
Identity = 109/153 (71.24%), Postives = 125/153 (81.70%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLL+AKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLR+PLS+SPD++PIR++EED+R+ NK+   S+VEEGE KRHWL  +E    K 
Sbjct: 81  YKKAYVTLRSPLSVSPDLFPIRVVEEDRRSANKKGGSSMVEEGERKRHWLDGEERERRKR 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K F  R R  +G+        KFPWS M+SGR
Sbjct: 141 EKEFGERVRGGSGA--------KFPWSFMKSGR 165

[Close]
BLAST of Cp4.1LG14g01260 vs. TAIR10
Match: AT4G39880.1 (AT4G39880.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-43
Identity = 96/155 (61.94%), Postives = 111/155 (71.61%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNMDGKKKKRGGLLIAK D
Sbjct: 21  MPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVNTLNMDGKKKKRGGLLIAKAD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLR+PLSIS D++P++ IEED+++  K S F + EE + K HWL  KE  E   
Sbjct: 81  YKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGSSF-VEEEDDKKSHWLDRKEKREIGG 140

Query: 121 Y-KGFANRGRRQTGS----AETIEPSTKFPWSSMR 151
           Y KG   RG  +  S          + KFPWS+MR
Sbjct: 141 YGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

[Close]
BLAST of Cp4.1LG14g01260 vs. NCBI nr
Match: gi|449438835|ref|XP_004137193.1| (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 2.8e-71
Identity = 139/154 (90.26%), Postives = 149/154 (96.75%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNM+GKKKKRGG+LIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSK SIVEEGEAK+HWLHEKEPV  K+
Sbjct: 81  YKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKT 140

Query: 121 YKGFANRGRRQT-GSAETIEPSTKFPWSSMRSGR 154
           YKGFA+RGRR++ G AET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]
BLAST of Cp4.1LG14g01260 vs. NCBI nr
Match: gi|659111130|ref|XP_008455593.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-70
Identity = 139/154 (90.26%), Postives = 147/154 (95.45%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV  K+
Sbjct: 81  YKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKT 140

Query: 121 YKGFANRGRRQT-GSAETIEPSTKFPWSSMRSGR 154
           YKGFA+RGRR+  G AET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]
BLAST of Cp4.1LG14g01260 vs. NCBI nr
Match: gi|1009145987|ref|XP_015890638.1| (PREDICTED: uncharacterized protein LOC107425195 [Ziziphus jujuba])

HSP 1 Score: 224.6 bits (571), Expect = 1.3e-55
Identity = 119/153 (77.78%), Postives = 123/153 (80.39%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP SFTNITEIALKTIPSASKIEIKRVLESLYGFEV+KVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPNSFTNITEIALKTIPSASKIEIKRVLESLYGFEVEKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTL+NPLSISPD+YPIRIIEEDKR MNKQ K S+VEEGE KRHWL  KE   FK 
Sbjct: 81  YKKAYVTLKNPLSISPDLYPIRIIEEDKRQMNKQPKSSMVEEGEVKRHWLDGKESQRFKP 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            KG  NR           E   KFPWSSMR  R
Sbjct: 141 EKGSGNRA----------ESGAKFPWSSMRPAR 163

[Close]
BLAST of Cp4.1LG14g01260 vs. NCBI nr
Match: gi|147784232|emb|CAN63891.1| (hypothetical protein VITISV_012657 [Vitis vinifera])

HSP 1 Score: 219.2 bits (557), Expect = 5.3e-54
Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVRTLNM+GKKKKRGGLLIAKPD
Sbjct: 330 MPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGGLLIAKPD 389

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSK SIVEEGEAK HWL  K+   F+ 
Sbjct: 390 YKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEGEAKSHWLDGKDGDRFRP 449

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K  A RGR   G A     + KFPWS MR+ R
Sbjct: 450 EKSSAERGRGGRGGAAA--AAAKFPWSGMRASR 480

[Close]
BLAST of Cp4.1LG14g01260 vs. NCBI nr
Match: gi|731438556|ref|XP_010647317.1| (PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera])

HSP 1 Score: 218.8 bits (556), Expect = 7.0e-54
Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1 

Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVRTLNM+GKKKKRGGLLIAKPD
Sbjct: 21  MPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSK SIVEEGEAK HWL  K+   F+ 
Sbjct: 81  YKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIVEEGEAKSHWLDGKDGDRFRP 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 154
            K  A RGR   G A     + KFPWS MR+ R
Sbjct: 141 EKSSAERGRGGRGGAAA---AAKFPWSGMRASR 170

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g01260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL23_METCA1.1e-0641.6750S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB... [more]
RL23_AERHH1.9e-0645.7650S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC... [more]
RL23_HAES11.9e-0642.4750S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1[more]
RL23_AERS42.4e-0645.7650S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) GN=rplW PE=3 SV... [more]
RL23_ALKEH2.4e-0645.7650S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D... [more]
BLAST of Cp4.1LG14g01260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0J2_CUCSA2.0e-7190.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1[more]
A5BVA7_VITVI3.7e-5473.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1[more]
D7T5V5_VITVI4.9e-5473.86Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=... [more]
A0A067LED8_JATCU5.9e-5271.43Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1[more]
A0A059AL68_EUCGR2.9e-5171.24Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1[more]
BLAST of Cp4.1LG14g01260 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39880.11.2e-4361.94 Ribosomal protein L23/L15e family protein[more]
BLAST of Cp4.1LG14g01260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438835|ref|XP_004137193.1|2.8e-7190.26PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus][more]
gi|659111130|ref|XP_008455593.1|1.4e-7090.26PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo][more]
gi|1009145987|ref|XP_015890638.1|1.3e-5577.78PREDICTED: uncharacterized protein LOC107425195 [Ziziphus jujuba][more]
gi|147784232|emb|CAN63891.1|5.3e-5473.86hypothetical protein VITISV_012657 [Vitis vinifera][more]
gi|731438556|ref|XP_010647317.1|7.0e-5473.86PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR013025Ribosomal_L25/23
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR012677Nucleotide-bd_a/b_plait_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0015992 proton transport
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005351 sugar:proton symporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g01260.1Cp4.1LG14g01260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 11..74
score: 2.8
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 11..74
score: 2.05
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 10..70
score: 1.8
NoneNo IPR availablePANTHERPTHR12059RIBOSOMAL PROTEIN L23-RELATEDcoord: 1..155
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g01260Wax gourdcpewgoB0281
Cp4.1LG14g01260Wax gourdcpewgoB0305
Cp4.1LG14g01260Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG14g01260Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG14g01260Cucumber (Gy14) v1cgycpeB0216
Cp4.1LG14g01260Cucumber (Gy14) v1cgycpeB0716
Cp4.1LG14g01260Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g01260Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g01260Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g01260Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g01260Wild cucumber (PI 183967)cpecpiB222
Cp4.1LG14g01260Wild cucumber (PI 183967)cpecpiB232
Cp4.1LG14g01260Cucumber (Chinese Long) v2cpecuB220
Cp4.1LG14g01260Bottle gourd (USVL1VR-Ls)cpelsiB164
Cp4.1LG14g01260Bottle gourd (USVL1VR-Ls)cpelsiB170
Cp4.1LG14g01260Watermelon (Charleston Gray)cpewcgB195
Cp4.1LG14g01260Watermelon (Charleston Gray)cpewcgB204
Cp4.1LG14g01260Watermelon (97103) v1cpewmB206
Cp4.1LG14g01260Watermelon (97103) v1cpewmB232
Cp4.1LG14g01260Melon (DHL92) v3.5.1cpemeB199
Cp4.1LG14g01260Melon (DHL92) v3.5.1cpemeB205
Cp4.1LG14g01260Melon (DHL92) v3.5.1cpemeB209
Cp4.1LG14g01260Cucumber (Gy14) v2cgybcpeB486
Cp4.1LG14g01260Melon (DHL92) v3.6.1cpemedB251
Cp4.1LG14g01260Silver-seed gourdcarcpeB0557
Cp4.1LG14g01260Silver-seed gourdcarcpeB1301
Cp4.1LG14g01260Silver-seed gourdcarcpeB1414
Cp4.1LG14g01260Cucumber (Chinese Long) v3cpecucB0264
Cp4.1LG14g01260Cucumber (Chinese Long) v3cpecucB0284