Cp4.1LG14g01250 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g01250
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 3843315 .. 3845897 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTACATCTTTTGGTTAATAGTTCGAGCGAACTGCCATGTGATGTTGGGACATTGCGCAAGGGCTTTGAGTTCATGTAATGTGTTACTCTGAGCAGTGAAATAATCTTTGTTATGAAATCCCCTCTGATGGCAATGGAAATTGTTTTGAAATTTAATTGTTCTCTTGAGTTCCAGATGTTATAAAGAATTGATAGTTCAGCAAAGAAGTTTTCTATTTTTTTGATACTTTTGATTGATGCACCCAAAATGTACTGATTGTCATTGTGTACTCAACTAGTTGGTTATGCATTTAGGTGGGTCATTGAGTTCAAGACACTTAATTAATGCGATGGAATGCTATAGATTGTTTCATTTTTTGTTGTAACCTATCAAACATAATGAATGATTTGGCATTTTATCAATTAGTAGCTTTTTAATTTTAATTTTGTTTTGCTTTGATGAAGTATCTAAAGTTTATGTTGGTTCGCCGCCCTAAGCATAAGCATAACTCAACTGGTTTGGTCAATACGTTGACAAAGAGGTATGTGAGTCGAATCGTCCAACCCCATATGTTTTTTATCTTGAAAAACAGGGTTCATGTTGCTTTATATTATATTATCAGCATAAATTAAGTCCACATGTTTTTCAAAGAATATCCTACAAGCTTCAGAAAACTCATTTTATCTTAATATTGTTCTACATATACTATTTCAGGGGCTATTTTAGTCCCATATTTGGTTTGTGTTTTATATGATTTAGCCTTCTAAGTTCTAACGCTTTATCGTCGATGATATAAGTTGTTAAAGAAAAGACCTTCATTTCGGAATTTTCCATTTCTACATCTCTTTCTTCCGTGATCAATTCCCAAGTGTCGTACTTCTTTAGAGTCTAATACCTAAAAAAAAATTCCATCTATAAAGCCCTGAAAAACCGCCTGTTTACCAATCGAGCTACGGCCGAAGTATCCGCAACCCGATGGAACCTCTATTGTCAATAACATAAAAGATTGCTATAAAGGTAGGGTAATGTGCATAGTCTGCAAATTTCCCTGAGCGGACTTTGAAAAGAATCGCTAATGAGTTTGAATCACAAATTCACAACTTAAGTCTGTGGATAATGCGTATTTAGCCGTATAGAGTTCATGATTGAGAGTTAGCTGCTCAGTGTCTGATCTAGTTAGTAAATAATAGCGATCTATTTTGACAGATCATTACTTGTTTCAGTCTATGAAGCATATAGTGAAAATATTGACATTGTTGGTGGCCGTATCAGCTCTGTGGATTGGTCTCTTGCAGGCATCTGTAATACCACATGGTCATGCTTGGCTGGTGAGTTAACATTCAGTCATCTTTTTCTTAAATCCTTCATATTTATTTTCATCATTTTAGACACTCAGTTGGGCTTACATCGCATGCCTCATCACTCCAGCTACCCATCTATTTTATTGTCTCCCTGGGATGCTATGGTCTATTGATGGTTGGAATCGGTCTAATGACATTCCCAACATGTCCTAGAGAAGGCCTGTTGTTACAGCAGGTATTGCTTCCCTCTTATTCTCAGTTGCACTTTCATATCATACAACAAATGGCCCTCCTTCTCTCTTTCTCTGGAATGTTTGAGTTTCCATATCCAAGGCATTACTAAGATTGAAATGCTCTCACGTGGCACTTCCATACCATACAACAAATTGTCCATCTCGCTAGCTTAGCAATAATTGACATTTACTTCTTCCCTTGAGGTCGGAGGTTTAAATTTCCGTGACCCATTTGCTTATATGGTCTTCTCGCTCTCTCGGAGGTTTAAATCTCCGTGACCAATTTTCTTATATGGTCGTTTAAATCTCCGTGACCCATTTGCTTATAAGGTCCTCTCGCTCTCTCGGAGGTTTAGATCTCCATGACCCATTTTCTTATATGGTCCTCTCGCTCTCTCGGAGGTTTAAATCTCCGTGACCAATTTTCTTATATGGTCCTCTTGCTCTACCGGATGTTTAGATCTCCGTGACTCATTTTCTTATATGGTCCTCTCGCTCTCTCGGAGGTTTTAATCTCCGTGATCCATTTTCTTATATGGTCCTCTCGCTCTCTCAGAGGTTTAAATCTCCGTGACCTGTTTTCTTATATGGTTCTCTAGCTCTATGGGGAATGTTCTTTGAATTTCCATATGTATCATTACTAAGACTGAAAGATGTACAGACCGATATCACATTGGGTCCCTTTTGTAGGACATTGACGAGGCCAAAGAGTACCTTAAGCAAAAAGGGGTTGACATAAATTCTAATTGACAGACTTCACCATCATTTGTTCGATTATGGGGAAGAACACACACTCATCTCGAAGAGCCTTTTTGATTTGATTCTTTATGTAAGGTAGTGAATGTGGATTCATGGATAGAACAGTTGAACGGTCATGATGATTTTGTCGGTTGGTAACACAATCTTGATTTATGAACATAAAGGTGGCCACCGGCAAATCTCTCATCTATATATATATATATATATATATATGTTTCCATTTCTTATACGTTTATTGTTCGATTATGATTGTATTTTTAGATGGCTTTCGAAATTGATGTTAATAACCTCAGTTGGATTGTTTC

mRNA sequence

ATGCGTTTACATCTTTTGGTTAATAGTTCGAGCGAACTGCCATGTGATGTTGGGACATTGCGCAAGGGCTTTGAGTTCATATCATTACTTGTTTCAGTCTATGAAGCATATAGTGAAAATATTGACATTGTTGGTGGCCGTATCAGCTCTGTGGATTGGTCTCTTGCAGGCATCTGTAATACCACATGGTCATGCTTGGCTGCTACCCATCTATTTTATTGTCTCCCTGGGATGCTATGGTCTATTGATGGTTGGAATCGGTCTAATGACATTCCCAACATGTCCTAGAGAAGGCCTGTTGTTACAGCAGGACATTGACGAGGCCAAAGAGTACCTTAAGCAAAAAGGGGTTGACATAAATTCTAATTGACAGACTTCACCATCATTTGTTCGATTATGGGGAAGAACACACACTCATCTCGAAGAGCCTTTTTGATTTGATTCTTTATGTAAGGTAGTGAATGTGGATTCATGGATAGAACAGTTGAACGGTCATGATGATTTTGTCGGTTGGTAACACAATCTTGATTTATGAACATAAAGGTGGCCACCGGCAAATCTCTCATCTATATATATATATATATATATATATGTTTCCATTTCTTATACGTTTATTGTTCGATTATGATTGTATTTTTAGATGGCTTTCGAAATTGATGTTAATAACCTCAGTTGGATTGTTTC

Coding sequence (CDS)

ATGCGTTTACATCTTTTGGTTAATAGTTCGAGCGAACTGCCATGTGATGTTGGGACATTGCGCAAGGGCTTTGAGTTCATATCATTACTTGTTTCAGTCTATGAAGCATATAGTGAAAATATTGACATTGTTGGTGGCCGTATCAGCTCTGTGGATTGGTCTCTTGCAGGCATCTGTAATACCACATGGTCATGCTTGGCTGCTACCCATCTATTTTATTGTCTCCCTGGGATGCTATGGTCTATTGATGGTTGGAATCGGTCTAATGACATTCCCAACATGTCCTAG

Protein sequence

MRLHLLVNSSSELPCDVGTLRKGFEFISLLVSVYEAYSENIDIVGGRISSVDWSLAGICNTTWSCLAATHLFYCLPGMLWSIDGWNRSNDIPNMS
Homology
[Close]
BLAST of Cp4.1LG14g01250 vs. NCBI nr
Match: gi|659130333|ref|XP_008465114.1| (PREDICTED: uncharacterized protein LOC103502803 isoform X2 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 50  SVDWSLAGICNTTWSCLAATHLFYCLPGMLWSIDGWNRSNDIPNM 95
           SVDW LA I  TTW  L ATHLFYCLPGMLWS+DGW+RSNDI N+
Sbjct: 116 SVDWPLADIYITTWPHLVATHLFYCLPGMLWSVDGWSRSNDISNL 160

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g01250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g01250 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g01250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g01250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130333|ref|XP_008465114.1|3.0e-1275.56PREDICTED: uncharacterized protein LOC103502803 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g01250.1Cp4.1LG14g01250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g01250Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG14g01250Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG14g01250Cucumber (Gy14) v1cgycpeB0216
Cp4.1LG14g01250Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g01250Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g01250Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g01250Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g01250Wild cucumber (PI 183967)cpecpiB232
Cp4.1LG14g01250Bottle gourd (USVL1VR-Ls)cpelsiB164
Cp4.1LG14g01250Bottle gourd (USVL1VR-Ls)cpelsiB170
Cp4.1LG14g01250Watermelon (Charleston Gray)cpewcgB195
Cp4.1LG14g01250Watermelon (Charleston Gray)cpewcgB204
Cp4.1LG14g01250Watermelon (97103) v1cpewmB232
Cp4.1LG14g01250Melon (DHL92) v3.5.1cpemeB205
Cp4.1LG14g01250Melon (DHL92) v3.5.1cpemeB209
Cp4.1LG14g01250Melon (DHL92) v3.6.1cpemedB251
Cp4.1LG14g01250Silver-seed gourdcarcpeB0557
Cp4.1LG14g01250Silver-seed gourdcarcpeB1301
Cp4.1LG14g01250Silver-seed gourdcarcpeB1414
Cp4.1LG14g01250Cucumber (Chinese Long) v3cpecucB0284
Cp4.1LG14g01250Wax gourdcpewgoB0281
Cp4.1LG14g01250Wax gourdcpewgoB0305