Cp4.1LG14g00890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g00890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 3983488 .. 3983964 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTCGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCCTCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACTCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCACCAGCCATGACCCCACCTCCTACCCAACCACCATCATCCCCACCGACCCAACCACCAGCTTCACCTCCTACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCACCACCATCTGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGACAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGGTGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG

mRNA sequence

ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTCGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCCTCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACTCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCACCAGCCATGACCCCACCTCCTACCCAACCACCATCATCCCCACCGACCCAACCACCAGCTTCACCTCCTACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCACCACCATCTGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGACAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGGTGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG

Coding sequence (CDS)

ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTCGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCCTCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACTCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCACCAGCCATGACCCCACCTCCTACCCAACCACCATCATCCCCACCGACCCAACCACCAGCTTCACCTCCTACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCACCACCATCTGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGACAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGGTGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG

Protein sequence

MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPAMTPPPTQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
Homology
[Close]
BLAST of Cp4.1LG14g00890 vs. TrEMBL
Match: A0A0A0L0L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-36
Identity = 126/170 (74.12%), Postives = 136/170 (80.00%), Query Frame = 1 

Query: 1   MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPP 60
           MKMGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +  PATPPP ATPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPP-ATPP 60

Query: 61  PATPPAMTPPP-TQPPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASPP 120
           PATPP  TPPP + PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SPP
Sbjct: 61  PATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSPP 120

Query: 121 SPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
           SPP EG  P+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 SPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166

[Close]
BLAST of Cp4.1LG14g00890 vs. TrEMBL
Match: A0A0R0KYA8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-08
Identity = 78/157 (49.68%), Postives = 98/157 (62.42%), Query Frame = 1 

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPA-TPPPAATPPPATPP- 65
           Q L++L L A+S +AQAPGAAP QPPTT     PS PPP  APA  P P ATPPPATPP 
Sbjct: 7   QLLLILGLLASSCLAQAPGAAPTQPPTTT----PSPPPPRSAPAPAPTPPATPPPATPPP 66

Query: 66  -AMTPPP-TQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSPPSEGMGPSASP 125
            A TPPP T PP++ PT  P + PT     P   PA+SP PS++SPP+P + G  P  + 
Sbjct: 67  AAATPPPATSPPATTPTPTPTAAPT-----PASSPATSPVPSASSPPAPGTAGPAPGPAG 126

Query: 126 GPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
           G   PPPP   + A + S+  + G A++G  +AMV A
Sbjct: 127 GAEPPPPP---SAAFSASKAFIAGSALSGIFVAMVLA 151

[Close]
BLAST of Cp4.1LG14g00890 vs. TrEMBL
Match: Q84QK1_LOTJA (Putative arabinagalactan protein OS=Lotus japonicus GN=agp1 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 1 

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATP-PPATPPA 65
           +  ++L L ATS +AQAPGAAP Q PTT   PPP+   P   PATPPPAATP P  TPPA
Sbjct: 7   KLFLILGLLATSCVAQAPGAAPTQAPTTTPPPPPAA-APAPPPATPPPAATPAPTTTPPA 66

Query: 66  MTPPPTQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSP----PSEGMGPSAS 125
            TP P+  P              P P P   P  +PTPS++SPP+P    P+ G GP+A 
Sbjct: 67  ATPAPSASP--------------PAPTPTASPTGAPTPSASSPPAPIPSGPASGPGPAAG 126

Query: 126 PGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
           PGPNS   PP  + A ++++ ++ G A+     AMV A
Sbjct: 127 PGPNSADTPPPPSAAFSLNQPIIAGTALVATFFAMVLA 149

[Close]
BLAST of Cp4.1LG14g00890 vs. NCBI nr
Match: gi|700198508|gb|KGN53666.1| (hypothetical protein Csa_4G098710 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-36
Identity = 126/170 (74.12%), Postives = 136/170 (80.00%), Query Frame = 1 

Query: 1   MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPP 60
           MKMGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +  PATPPP ATPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPP-ATPP 60

Query: 61  PATPPAMTPPP-TQPPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASPP 120
           PATPP  TPPP + PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SPP
Sbjct: 61  PATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSPP 120

Query: 121 SPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
           SPP EG  P+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 SPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166

[Close]
BLAST of Cp4.1LG14g00890 vs. NCBI nr
Match: gi|659111292|ref|XP_008455676.1| (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 123/168 (73.21%), Postives = 134/168 (79.76%), Query Frame = 1 

Query: 3   MGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP--ATPPPAATPPPA 62
           MGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +P  ATPPPA TPPPA
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPA-TPPPA 60

Query: 63  TPPAMTPPPTQ-PPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASPPSP 122
           TPP  TPPP   PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SPPSP
Sbjct: 61  TPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSPPSP 120

Query: 123 PSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
           P EG  P++SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAM+FA
Sbjct: 121 PPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164

[Close]
BLAST of Cp4.1LG14g00890 vs. NCBI nr
Match: gi|778697564|ref|XP_011654350.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 124/168 (73.81%), Postives = 133/168 (79.17%), Query Frame = 1 

Query: 3   MGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP--ATPPPAATPPPA 62
           MGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +P  ATPPPA TPPPA
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPA-TPPPA 60

Query: 63  TPPAMTPPPTQ-PPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASPPSP 122
           TPP  TPPP   PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SPPSP
Sbjct: 61  TPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSPPSP 120

Query: 123 PSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
           P EG  P+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 PPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 164

[Close]
BLAST of Cp4.1LG14g00890 vs. NCBI nr
Match: gi|947121437|gb|KRH69643.1| (hypothetical protein GLYMA_02G039700 [Glycine max])

HSP 1 Score: 65.5 bits (158), Expect = 9.7e-08
Identity = 78/157 (49.68%), Postives = 98/157 (62.42%), Query Frame = 1 

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPA-TPPPAATPPPATPP- 65
           Q L++L L A+S +AQAPGAAP QPPTT     PS PPP  APA  P P ATPPPATPP 
Sbjct: 7   QLLLILGLLASSCLAQAPGAAPTQPPTTT----PSPPPPRSAPAPAPTPPATPPPATPPP 66

Query: 66  -AMTPPP-TQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSPPSEGMGPSASP 125
            A TPPP T PP++ PT  P + PT     P   PA+SP PS++SPP+P + G  P  + 
Sbjct: 67  AAATPPPATSPPATTPTPTPTAAPT-----PASSPATSPVPSASSPPAPGTAGPAPGPAG 126

Query: 126 GPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
           G   PPPP   + A + S+  + G A++G  +AMV A
Sbjct: 127 GAEPPPPP---SAAFSASKAFIAGSALSGIFVAMVLA 151

[Close]
BLAST of Cp4.1LG14g00890 vs. NCBI nr
Match: gi|30140331|emb|CAD89603.1| (putative arabinagalactan protein [Lotus japonicus])

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-06
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 1 

Query: 6   QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATP-PPATPPA 65
           +  ++L L ATS +AQAPGAAP Q PTT   PPP+   P   PATPPPAATP P  TPPA
Sbjct: 7   KLFLILGLLATSCVAQAPGAAPTQAPTTTPPPPPAA-APAPPPATPPPAATPAPTTTPPA 66

Query: 66  MTPPPTQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPSP----PSEGMGPSAS 125
            TP P+  P              P P P   P  +PTPS++SPP+P    P+ G GP+A 
Sbjct: 67  ATPAPSASP--------------PAPTPTASPTGAPTPSASSPPAPIPSGPASGPGPAAG 126

Query: 126 PGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
           PGPNS   PP  + A ++++ ++ G A+     AMV A
Sbjct: 127 PGPNSADTPPPPSAAFSLNQPIIAGTALVATFFAMVLA 149

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g00890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g00890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0L1_CUCSA1.2e-3674.12Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1[more]
A0A0R0KYA8_SOYBN6.8e-0849.68Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1[more]
Q84QK1_LOTJA2.2e-0644.94Putative arabinagalactan protein OS=Lotus japonicus GN=agp1 PE=4 SV=1[more]
BLAST of Cp4.1LG14g00890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g00890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198508|gb|KGN53666.1|1.7e-3674.12hypothetical protein Csa_4G098710 [Cucumis sativus][more]
gi|659111292|ref|XP_008455676.1|1.1e-3573.21PREDICTED: vegetative cell wall protein gp1 [Cucumis melo][more]
gi|778697564|ref|XP_011654350.1|1.9e-3573.81PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus][more]
gi|947121437|gb|KRH69643.1|9.7e-0849.68hypothetical protein GLYMA_02G039700 [Glycine max][more]
gi|30140331|emb|CAD89603.1|3.1e-0644.94putative arabinagalactan protein [Lotus japonicus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g00890.1Cp4.1LG14g00890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 72..93
score: 2.2E-11coord: 21..33
score: 2.2E-11coord: 36..52
score: 2.2E-11coord: 60..72
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g00890Watermelon (Charleston Gray)cpewcgB195
Cp4.1LG14g00890Watermelon (Charleston Gray)cpewcgB204
Cp4.1LG14g00890Watermelon (97103) v1cpewmB232
Cp4.1LG14g00890Melon (DHL92) v3.5.1cpemeB199
Cp4.1LG14g00890Melon (DHL92) v3.5.1cpemeB205
Cp4.1LG14g00890Melon (DHL92) v3.5.1cpemeB209
Cp4.1LG14g00890Cucumber (Gy14) v2cgybcpeB486
Cp4.1LG14g00890Melon (DHL92) v3.6.1cpemedB247
Cp4.1LG14g00890Melon (DHL92) v3.6.1cpemedB251
Cp4.1LG14g00890Silver-seed gourdcarcpeB0557
Cp4.1LG14g00890Silver-seed gourdcarcpeB1301
Cp4.1LG14g00890Silver-seed gourdcarcpeB1414
Cp4.1LG14g00890Cucumber (Chinese Long) v3cpecucB0264
Cp4.1LG14g00890Cucumber (Chinese Long) v3cpecucB0284
Cp4.1LG14g00890Wax gourdcpewgoB0267
Cp4.1LG14g00890Wax gourdcpewgoB0305
Cp4.1LG14g00890Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG14g00890Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG14g00890Cucumber (Gy14) v1cgycpeB0216
Cp4.1LG14g00890Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g00890Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g00890Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g00890Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g00890Wild cucumber (PI 183967)cpecpiB222
Cp4.1LG14g00890Wild cucumber (PI 183967)cpecpiB232
Cp4.1LG14g00890Cucumber (Chinese Long) v2cpecuB220
Cp4.1LG14g00890Bottle gourd (USVL1VR-Ls)cpelsiB164
Cp4.1LG14g00890Bottle gourd (USVL1VR-Ls)cpelsiB176