Cp4.1LG14g00400 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g00400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionATP-binding cassette 14
LocationCp4.1LG14 : 4517189 .. 4518833 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGGTTTCATTCATGTTGTATGTCTTTGCATTTCCGTGCATGGTTGACATTACAAGTAAAGATCATGACACATGCATAGAGTAGATGTATTTAAATTTCTTAGACTTTAGGTTGGTACAGAGCGTGATTATATTTAATATTTACTTTTTTTTATTTAATATTTCTTTTGTATTGTTTTAAAAACATTTTCTCAAACAGGTAAGTTCATAGCATTGTTTATGAATATGATTTAAATGATTATTCTCGCATAAAGATATCTATTGAGATATAATATTTGATTTACAGTATATTGTATTTTATTCTCAATATTTAATTATTTTATATTTTTCTTATTTGTACGTATTAGTTGCTAGCTTGTATCCTATTTAAAGGATATCAATATCAATGAGAATACACATCTTCCCAATTCTATTTCTATTTCTTGGACTAAGTACATTTCTATTGGTACTTATACTTATAAGCTTTTGCTGATATCTCAATACAAAGCTACTAATACTTATCTATGTTCCGGCCATGGAGTGGGGGTGTGTGAAGTTGGAGAGTTCCCTGCAATTAAGCAAATGGGTCTTCATGGGAAAACCACTGCTATTTTGGCTTTGATGGCTATGCTCGTTGGATATCGTCTTGTTACTTATACTGCTTTGATGAGGATTGGTGTAATTAAGAAGGAATAGCTTTGATGTGTAACGGATGAATTTGTTTTGAAATCTTTGATATTGTTAGGGTTAATCTTTGATGTTTATAGGGATAGTGATAGTTCAGTGACACTTAGTTTGTTCATTGTTCCCTTTGGCTATCTATTTATATATTGATGGTAGAATATGTAACCAAAGCTCTTTATTTTTCTTTTCGTTTTGATATTCGTTCGATGCATGTCATGTTAGTGAATACTTGAACCATGTTGGAAATTGTTGTTTGTGAAGATATGAAAGTCTAACTTTTGACTCTAACGAACGTTATAAAGCTATGTTGTTGTTGAATATAATATGATATGATCGTAGGGAATATGAAGCCCAATCTTTAAAAAAATTTATGCAACAAGATGATATCTAATAAGCCTAGCAACCAAATCCAAAACAGTAGTGATTTTTCCATGATGACCCACTTGCCTAATTGCAAGGGTCTCTTCAACTTCATGTAGCTCCCTCCATTGCCTGAATATGGATAAATATCAGTAGCTTCGTATTGAGATAGATATTGCAAAAGTCTGTAAGTATAAGTACCAATAGAAATGTACTTAGTCTAAGCAATAAACATTGACACCTATCGAACAAAATAGCTTGATGTTAGAAGGAAACAAAGTATGATGACTGATCCAAGTGTGGTGGTTGAAGTTTTGTCCAAAACAAGGGTGCCAACAGCCAGACCAGACACTTGGGACGCTAAAACACTCAGAAGCGGAGGAAATAGAGTAAAAAAGAAACTCGCCGCGGTTCGTTTCAACCCTACCATCCTGTAGATTATGATGACGAATACGGTGGGAAGGACGAGCTCCATTGGGAGGTCGCTTATGGTTCTTGAGATGAAGTAGGATGAGAGGCGGTACATTTTTTAGGATCTTTCCTTTTCAAGTATCATTCTTTTTCTTGGGAAGGTGGTGGTAGCTCGCTTCAGAAGGAAGGAACCCCAAAAGTTCGGTGA

mRNA sequence

ATGATAGTGGGGGTGTGTGAAGTTGGAGAGTTCCCTGCAATTAAGCAAATGGGTCTTCATGGGAAAACCACTGCTATTTTGGCTTTGATGGCTATGCTCGTTGGATATCGTCTTGTTACTTATACTGCTTTGATGAGGATTGATTATGATGACGAATACGGTGGGAAGGACGAGCTCCATTGGGAGGTCGCTTATGGTGGTGGTAGCTCGCTTCAGAAGGAAGGAACCCCAAAAGTTCGGTGA

Coding sequence (CDS)

ATGATAGTGGGGGTGTGTGAAGTTGGAGAGTTCCCTGCAATTAAGCAAATGGGTCTTCATGGGAAAACCACTGCTATTTTGGCTTTGATGGCTATGCTCGTTGGATATCGTCTTGTTACTTATACTGCTTTGATGAGGATTGATTATGATGACGAATACGGTGGGAAGGACGAGCTCCATTGGGAGGTCGCTTATGGTGGTGGTAGCTCGCTTCAGAAGGAAGGAACCCCAAAAGTTCGGTGA

Protein sequence

MIVGVCEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRIDYDDEYGGKDELHWEVAYGGGSSLQKEGTPKVR
Homology
[Close]
BLAST of Cp4.1LG14g00400 vs. TrEMBL
Match: A0A0A0L5B4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G102320 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-08
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 2   IVGVCEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           I GVC+VGEFP IKQ+GL GK   +LAL+ M VGYR + Y ALMRI
Sbjct: 558 IGGVCKVGEFPVIKQIGLEGKAMTVLALVVMFVGYRFIAYVALMRI 603

[Close]
BLAST of Cp4.1LG14g00400 vs. TrEMBL
Match: A0A0A0L374_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G101820 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-08
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 

Query: 6   CEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           CEVGEFP IKQ+GL GK  A+ A++AMLVGYRLV Y ALMRI
Sbjct: 570 CEVGEFPPIKQVGLDGKLFAVSAMVAMLVGYRLVAYIALMRI 611

[Close]
BLAST of Cp4.1LG14g00400 vs. TrEMBL
Match: A0A151QRD4_CAJCA (ABC transporter G family member 9 (Fragment) OS=Cajanus cajan GN=KK1_046378 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-06
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 

Query: 4   GVCEVGEFPAIKQMGLH--GKTTAILALMAMLVGYRLVTYTALMRI 48
           G C + E+P IKQMGLH  G+ TA LAL  ML+GYRLV Y ALMRI
Sbjct: 540 GKCLIAEYPMIKQMGLHLQGQLTAALALFIMLIGYRLVAYCALMRI 585

[Close]
BLAST of Cp4.1LG14g00400 vs. TrEMBL
Match: V4TX64_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007744mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-06
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 

Query: 4   GVCEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           G+C VGE P IK++GLH K  +++AL  MLVGYRL+ Y ALMRI
Sbjct: 580 GLCLVGEHPTIKKVGLHRKYYSVIALAIMLVGYRLIAYIALMRI 623

[Close]
BLAST of Cp4.1LG14g00400 vs. TrEMBL
Match: A0A067GFE4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010509mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-06
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 

Query: 4   GVCEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           G+C VGE P IK++GLH K  +++AL  MLVGYRL+ Y ALMRI
Sbjct: 460 GLCLVGEHPTIKKVGLHRKYYSVIALAIMLVGYRLIAYIALMRI 503

[Close]
BLAST of Cp4.1LG14g00400 vs. TAIR10
Match: AT1G31770.1 (AT1G31770.1 ATP-binding cassette 14)

HSP 1 Score: 48.1 bits (113), Expect = 2.9e-06
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 1 

Query: 6   CEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           C VG+FPAIK MGL+     +  +  MLVGYRL+ Y AL R+
Sbjct: 604 CRVGDFPAIKSMGLNNLWIDVFVMGVMLVGYRLMAYMALHRV 645

[Close]
BLAST of Cp4.1LG14g00400 vs. NCBI nr
Match: gi|659102871|ref|XP_008452359.1| (PREDICTED: ABC transporter G family member 9-like [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-08
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 

Query: 5   VCEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           VCEVGEFP IK++GL GK  A+LA++AMLVGYRL+ Y ALMRI
Sbjct: 527 VCEVGEFPPIKEVGLDGKLFAVLAMVAMLVGYRLIAYIALMRI 569

[Close]
BLAST of Cp4.1LG14g00400 vs. NCBI nr
Match: gi|700201091|gb|KGN56224.1| (hypothetical protein Csa_3G102320 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 2   IVGVCEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           I GVC+VGEFP IKQ+GL GK   +LAL+ M VGYR + Y ALMRI
Sbjct: 558 IGGVCKVGEFPVIKQIGLEGKAMTVLALVVMFVGYRFIAYVALMRI 603

[Close]
BLAST of Cp4.1LG14g00400 vs. NCBI nr
Match: gi|449432932|ref|XP_004134252.1| (PREDICTED: ABC transporter G family member 9-like [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 2   IVGVCEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           I GVC+VGEFP IKQ+GL GK   +LAL+ M VGYR + Y ALMRI
Sbjct: 577 IGGVCKVGEFPVIKQIGLEGKAMTVLALVVMFVGYRFIAYVALMRI 622

[Close]
BLAST of Cp4.1LG14g00400 vs. NCBI nr
Match: gi|449432930|ref|XP_004134251.1| (PREDICTED: ABC transporter G family member 9 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 

Query: 6   CEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           CEVGEFP IKQ+GL GK  A+ A++AMLVGYRLV Y ALMRI
Sbjct: 570 CEVGEFPPIKQVGLDGKLFAVSAMVAMLVGYRLVAYIALMRI 611

[Close]
BLAST of Cp4.1LG14g00400 vs. NCBI nr
Match: gi|659102707|ref|XP_008452272.1| (PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 9-like [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1 

Query: 2   IVGVCEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVTYTALMRI 48
           I GVC+VGEFP IK++GL GK   +L L+ M V YR + Y ALMRI
Sbjct: 578 IGGVCKVGEFPVIKEIGLEGKAMTVLVLVVMFVVYRFIAYVALMRI 623

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g00400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g00400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5B4_CUCSA4.5e-0865.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G102320 PE=4 SV=1[more]
A0A0A0L374_CUCSA7.7e-0873.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G101820 PE=4 SV=1[more]
A0A151QRD4_CAJCA4.2e-0665.22ABC transporter G family member 9 (Fragment) OS=Cajanus cajan GN=KK1_046378 PE=4... [more]
V4TX64_9ROSI7.2e-0661.36Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007744mg PE=4 SV=1[more]
A0A067GFE4_CITSI7.2e-0661.36Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010509mg PE=4 SV=1[more]
BLAST of Cp4.1LG14g00400 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31770.12.9e-0652.38 ATP-binding cassette 14[more]
BLAST of Cp4.1LG14g00400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102871|ref|XP_008452359.1|2.9e-0872.09PREDICTED: ABC transporter G family member 9-like [Cucumis melo][more]
gi|700201091|gb|KGN56224.1|6.4e-0865.22hypothetical protein Csa_3G102320 [Cucumis sativus][more]
gi|449432932|ref|XP_004134252.1|6.4e-0865.22PREDICTED: ABC transporter G family member 9-like [Cucumis sativus][more]
gi|449432930|ref|XP_004134251.1|1.1e-0773.81PREDICTED: ABC transporter G family member 9 [Cucumis sativus][more]
gi|659102707|ref|XP_008452272.1|4.6e-0658.70PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 9-like [Cucumis ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g00400.1Cp4.1LG14g00400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19241ATP-BINDING CASSETTE TRANSPORTERcoord: 5..56
score: 5.4
NoneNo IPR availablePANTHERPTHR19241:SF257ABC TRANSPORTER G FAMILY MEMBER 9coord: 5..56
score: 5.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g00400Bhi11G000623Wax gourdcpewgoB0270
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g00400Cucumber (Chinese Long) v3cpecucB0244
Cp4.1LG14g00400Cucumber (Chinese Long) v3cpecucB0258
Cp4.1LG14g00400Wax gourdcpewgoB0280
Cp4.1LG14g00400Wax gourdcpewgoB0283
Cp4.1LG14g00400Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG14g00400Cucumber (Gy14) v1cgycpeB0118
Cp4.1LG14g00400Cucumber (Gy14) v1cgycpeB0326
Cp4.1LG14g00400Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g00400Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g00400Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g00400Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g00400Wild cucumber (PI 183967)cpecpiB206
Cp4.1LG14g00400Wild cucumber (PI 183967)cpecpiB218
Cp4.1LG14g00400Cucumber (Chinese Long) v2cpecuB203
Cp4.1LG14g00400Cucumber (Chinese Long) v2cpecuB215
Cp4.1LG14g00400Bottle gourd (USVL1VR-Ls)cpelsiB167
Cp4.1LG14g00400Bottle gourd (USVL1VR-Ls)cpelsiB176
Cp4.1LG14g00400Watermelon (Charleston Gray)cpewcgB195
Cp4.1LG14g00400Watermelon (Charleston Gray)cpewcgB206
Cp4.1LG14g00400Watermelon (97103) v1cpewmB217
Cp4.1LG14g00400Watermelon (97103) v1cpewmB220
Cp4.1LG14g00400Melon (DHL92) v3.5.1cpemeB186
Cp4.1LG14g00400Cucumber (Gy14) v2cgybcpeB033
Cp4.1LG14g00400Cucumber (Gy14) v2cgybcpeB328
Cp4.1LG14g00400Melon (DHL92) v3.6.1cpemedB235
Cp4.1LG14g00400Silver-seed gourdcarcpeB0937