Cp4.1LG14g00050 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g00050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHistone H2A
LocationCp4.1LG14 : 4684114 .. 4685195 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGCCGTCCGCCGAATAGTAATCGAATGGTCATGGTAATGATCCGCGTACTTGCATTCTATTGGTTGGTCTAAAAATCGGTTCCTTATATATTACTCGCACACGCAACTTCCCATTTGTCATCCTTTATTTTTCATTCAAAATATTCCTGAGTTTGAACTTCATCTCTTTCTGTATCCAAATTTCGACAAATCAATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCTGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAGTACGCAGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTATAAACACTTTCTCCAGTTTCTAATCCTGAATTTTTTCCTGTTTTCGATTCGCCTTCAGTTAAGAATTTCTTCCTGAAAATTTCTAGGTTCTGGAATTGGCTGGAAATGCAGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAAATTAAATGAAGAAACGTGGTCGAGGTGTTCAGATCTGGAATTTAGGTTTTGTTAGCTTTGTGTGCTTTACTTTAATGTGTTCTTAACTTTAATCAAAGAGCTGATGTGAATACGATCAATCTTCTTCGACAATTGTGGATTTCTTTTTCTTCCGTTTGAATTTTTGGTTCACAATTGGAATTGGAATTCTTTGGATATCTTGCTTCGAACTTTACGAAATGGCCTTATAGGGAACTGTATTAATTATCTTTTTTGTTTTTCTTTCTGAAGATTCAATTTCTTTTTTGTGAATTGTGAATCTATCTGTTTTAGGTTTTGGCGCTTCAAATGTTCATCTGAATTTGGGGGAAGAACAATGCGTTTCAAATTAAGCCAGTGTCTAGTTTTTTTTGG

mRNA sequence

TAAGCCGTCCGCCGAATAGTAATCGAATGGTCATGGTAATGATCCGCGTACTTGCATTCTATTGGTTGGTCTAAAAATCGGTTCCTTATATATTACTCGCACACGCAACTTCCCATTTGTCATCCTTTATTTTTCATTCAAAATATTCCTGAGTTTGAACTTCATCTCTTTCTGTATCCAAATTTCGACAAATCAATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCTGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAGTACGCAGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTTCTGGAATTGGCTGGAAATGCAGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAAATTAAATGAAGAAACGTGGTCGAGGTGTTCAGATCTGGAATTTAGGTTTTGTTAGCTTTGTGTGCTTTACTTTAATGTGTTCTTAACTTTAATCAAAGAGCTGATGTGAATACGATCAATCTTCTTCGACAATTGTGGATTTCTTTTTCTTCCGTTTGAATTTTTGGTTCACAATTGGAATTGGAATTCTTTGGATATCTTGCTTCGAACTTTACGAAATGGCCTTATAGGGAACTGTATTAATTATCTTTTTTGTTTTTCTTTCTGAAGATTCAATTTCTTTTTTGTGAATTGTGAATCTATCTGTTTTAGGTTTTGGCGCTTCAAATGTTCATCTGAATTTGGGGGAAGAACAATGCGTTTCAAATTAAGCCAGTGTCTAGTTTTTTTTGG

Coding sequence (CDS)

ATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCTGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAGTACGCAGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTTCTGGAATTGGCTGGAAATGCAGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAA

Protein sequence

MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
Homology
[Close]
BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 8.4e-61
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAG+SK
Sbjct: 121 KAGASK 126

[Close]
BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-60
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAGSSK
Sbjct: 121 KAGSSK 126

[Close]
BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.4e-60
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGED 133
           K G+SK S  +D
Sbjct: 121 KTGASKPSAEDD 132

[Close]
BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 9.3e-60
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KAGSSKASGGED 133
           KAG+SK S  ED
Sbjct: 121 KAGASKPSADED 132

[Close]
BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-59
Identity = 121/134 (90.30%), Postives = 127/134 (94.78%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGA+KKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDES 135
           KAG SKA   +D+S
Sbjct: 121 KAGGSKAVAADDDS 134

[Close]
BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: E0CT43_VITVI (Histone H2A OS=Vitis vinifera GN=VIT_19s0014g05020 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.9e-62
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KA-GSSKASGGEDES 135
           KA GSSKASGG+D+S
Sbjct: 121 KAGGSSKASGGDDDS 135

[Close]
BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: A0A0B0NVH6_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_22944 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-61
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAG-SSKASGGEDE 134
           KAG SSKASGG+++
Sbjct: 121 KAGTSSKASGGDED 134

[Close]
BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: A0A0D2U3W2_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_009G427700 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-61
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAG-SSKASGGEDE 134
           KAG SSKASGG+++
Sbjct: 121 KAGTSSKASGGDED 134

[Close]
BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: A0A0D2W6Q4_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_013G164500 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-61
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KA-GSSKASGGEDE 134
           KA GSSK SGG+D+
Sbjct: 121 KAGGSSKVSGGDDD 134

[Close]
BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: A0A0D2QY96_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_004G028500 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.4e-61
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDE 134
           K G+SK SG +D+
Sbjct: 121 KTGTSKTSGADDD 133

[Close]
BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 234.2 bits (596), Expect = 4.7e-62
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAG+SK
Sbjct: 121 KAGASK 126

[Close]
BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 233.4 bits (594), Expect = 8.1e-62
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAGSSK
Sbjct: 121 KAGSSK 126

[Close]
BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 232.6 bits (592), Expect = 1.4e-61
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGED 133
           K G+SK S  +D
Sbjct: 121 KTGASKPSAEDD 132

[Close]
BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 230.7 bits (587), Expect = 5.2e-61
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KAGSSKASGGED 133
           KAG+SK S  ED
Sbjct: 121 KAGASKPSADED 132

[Close]
BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 198.7 bits (504), Expect = 2.2e-51
Identity = 109/132 (82.58%), Postives = 112/132 (84.85%), Query Frame = 1 

Query: 2   AGRGKTLGSGASKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLE 61
           AG G T G     KAT   SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL 121
           YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSSKASGG 131
           P K G +K   G
Sbjct: 125 PSKVGKNKGDIG 136

[Close]
BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|225461156|ref|XP_002282795.1| (PREDICTED: probable histone H2A.2 [Vitis vinifera])

HSP 1 Score: 244.6 bits (623), Expect = 9.9e-62
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KA-GSSKASGGEDES 135
           KA GSSKASGG+D+S
Sbjct: 121 KAGGSSKASGGDDDS 135

[Close]
BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|823260568|ref|XP_012463007.1| (PREDICTED: histone H2A.6-like [Gossypium raimondii])

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-61
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KA-GSSKASGGEDE 134
           KA GSSK SGG+D+
Sbjct: 121 KAGGSSKVSGGDDD 134

[Close]
BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|823221720|ref|XP_012443554.1| (PREDICTED: histone H2A.6-like [Gossypium raimondii])

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-61
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAG-SSKASGGEDE 134
           KAG SSKASGG+++
Sbjct: 121 KAGTSSKASGGDED 134

[Close]
BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|823146482|ref|XP_012473137.1| (PREDICTED: probable histone H2A.1 [Gossypium raimondii])

HSP 1 Score: 242.3 bits (617), Expect = 4.9e-61
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDE 134
           K G+SK SG +D+
Sbjct: 121 KTGTSKTSGADDD 133

[Close]
BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|703083793|ref|XP_010092305.1| (putative histone H2A.1 [Morus notabilis])

HSP 1 Score: 241.9 bits (616), Expect = 6.4e-61
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 1 

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAG-SSKASGGEDES 135
           K G SSKA+GG+D+S
Sbjct: 121 KTGASSKAAGGDDDS 135

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2A6_ARATH8.4e-6197.62Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1[more]
H2A3_ARATH1.4e-6097.62Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1[more]
H2A1_ARATH2.4e-6092.42Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1[more]
H2A2_ARATH9.3e-6092.42Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1[more]
H2A7_WHEAT2.7e-5990.30Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3[more]
BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match NameE-valueIdentityDescription
E0CT43_VITVI6.9e-6297.04Histone H2A OS=Vitis vinifera GN=VIT_19s0014g05020 PE=3 SV=1[more]
A0A0B0NVH6_GOSAR2.6e-6197.01Histone H2A OS=Gossypium arboreum GN=F383_22944 PE=3 SV=1[more]
A0A0D2U3W2_GOSRA2.6e-6197.01Histone H2A OS=Gossypium raimondii GN=B456_009G427700 PE=3 SV=1[more]
A0A0D2W6Q4_GOSRA2.6e-6197.01Histone H2A OS=Gossypium raimondii GN=B456_013G164500 PE=3 SV=1[more]
A0A0D2QY96_GOSRA3.4e-6195.49Histone H2A OS=Gossypium raimondii GN=B456_004G028500 PE=3 SV=1[more]
BLAST of Cp4.1LG14g00050 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G54640.14.7e-6297.62 Histone superfamily protein[more]
AT4G27230.18.1e-6297.62 histone H2A 2[more]
AT1G51060.11.4e-6192.42 histone H2A 10[more]
AT3G20670.15.2e-6192.42 histone H2A 13[more]
AT1G54690.12.2e-5182.58 gamma histone variant H2AX[more]
BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|225461156|ref|XP_002282795.1|9.9e-6297.04PREDICTED: probable histone H2A.2 [Vitis vinifera][more]
gi|823260568|ref|XP_012463007.1|3.8e-6197.01PREDICTED: histone H2A.6-like [Gossypium raimondii][more]
gi|823221720|ref|XP_012443554.1|3.8e-6197.01PREDICTED: histone H2A.6-like [Gossypium raimondii][more]
gi|823146482|ref|XP_012473137.1|4.9e-6195.49PREDICTED: probable histone H2A.1 [Gossypium raimondii][more]
gi|703083793|ref|XP_010092305.1|6.4e-6195.56putative histone H2A.1 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR002119Histone_H2A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008283 cell proliferation
biological_process GO:0008150 biological_process
cellular_component GO:0005618 cell wall
cellular_component GO:0005730 nucleolus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g00050.1Cp4.1LG14g00050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 44..59
score: 4.7E-53coord: 73..87
score: 4.7E-53coord: 101..119
score: 4.7E-53coord: 15..37
score: 4.7E-53coord: 59..72
score: 4.7
IPR002119Histone H2ASMARTSM00414h2a4coord: 4..124
score: 1.2
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 12..90
score: 2.9
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 9..123
score: 3.4
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 9..126
score: 1.23
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 1..130
score: 2.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g00050CmaCh16G008160Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g00050CmoCh16G008720Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g00050Carg24084Silver-seed gourdcarcpeB0308
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g00050Cucumber (Gy14) v2cgybcpeB328
Cp4.1LG14g00050Melon (DHL92) v3.6.1cpemedB235
Cp4.1LG14g00050Silver-seed gourdcarcpeB0937
Cp4.1LG14g00050Cucumber (Chinese Long) v3cpecucB0258
Cp4.1LG14g00050Wax gourdcpewgoB0274
Cp4.1LG14g00050Wax gourdcpewgoB0283
Cp4.1LG14g00050Cucurbita pepo (Zucchini)cpecpeB005
Cp4.1LG14g00050Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG14g00050Cucurbita pepo (Zucchini)cpecpeB240
Cp4.1LG14g00050Cucumber (Gy14) v1cgycpeB0118
Cp4.1LG14g00050Cucurbita maxima (Rimu)cmacpeB469
Cp4.1LG14g00050Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g00050Cucurbita moschata (Rifu)cmocpeB308
Cp4.1LG14g00050Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g00050Wild cucumber (PI 183967)cpecpiB206
Cp4.1LG14g00050Wild cucumber (PI 183967)cpecpiB218
Cp4.1LG14g00050Cucumber (Chinese Long) v2cpecuB203
Cp4.1LG14g00050Cucumber (Chinese Long) v2cpecuB215
Cp4.1LG14g00050Bottle gourd (USVL1VR-Ls)cpelsiB167
Cp4.1LG14g00050Bottle gourd (USVL1VR-Ls)cpelsiB176
Cp4.1LG14g00050Watermelon (Charleston Gray)cpewcgB195
Cp4.1LG14g00050Watermelon (Charleston Gray)cpewcgB206
Cp4.1LG14g00050Watermelon (97103) v1cpewmB217
Cp4.1LG14g00050Melon (DHL92) v3.5.1cpemeB185
Cp4.1LG14g00050Melon (DHL92) v3.5.1cpemeB186