Cp4.1LG14g00050 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG14g00050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHistone H2A
LocationCp4.1LG14 : 4684114 .. 4685195 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGCCGTCCGCCGAATAGTAATCGAATGGTCATGGTAATGATCCGCGTACTTGCATTCTATTGGTTGGTCTAAAAATCGGTTCCTTATATATTACTCGCACACGCAACTTCCCATTTGTCATCCTTTATTTTTCATTCAAAATATTCCTGAGTTTGAACTTCATCTCTTTCTGTATCCAAATTTCGACAAATCAATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCTGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAGTACGCAGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTATAAACACTTTCTCCAGTTTCTAATCCTGAATTTTTTCCTGTTTTCGATTCGCCTTCAGTTAAGAATTTCTTCCTGAAAATTTCTAGGTTCTGGAATTGGCTGGAAATGCAGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAAATTAAATGAAGAAACGTGGTCGAGGTGTTCAGATCTGGAATTTAGGTTTTGTTAGCTTTGTGTGCTTTACTTTAATGTGTTCTTAACTTTAATCAAAGAGCTGATGTGAATACGATCAATCTTCTTCGACAATTGTGGATTTCTTTTTCTTCCGTTTGAATTTTTGGTTCACAATTGGAATTGGAATTCTTTGGATATCTTGCTTCGAACTTTACGAAATGGCCTTATAGGGAACTGTATTAATTATCTTTTTTGTTTTTCTTTCTGAAGATTCAATTTCTTTTTTGTGAATTGTGAATCTATCTGTTTTAGGTTTTGGCGCTTCAAATGTTCATCTGAATTTGGGGGAAGAACAATGCGTTTCAAATTAAGCCAGTGTCTAGTTTTTTTTGG

mRNA sequence

TAAGCCGTCCGCCGAATAGTAATCGAATGGTCATGGTAATGATCCGCGTACTTGCATTCTATTGGTTGGTCTAAAAATCGGTTCCTTATATATTACTCGCACACGCAACTTCCCATTTGTCATCCTTTATTTTTCATTCAAAATATTCCTGAGTTTGAACTTCATCTCTTTCTGTATCCAAATTTCGACAAATCAATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCTGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAGTACGCAGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTTCTGGAATTGGCTGGAAATGCAGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAAATTAAATGAAGAAACGTGGTCGAGGTGTTCAGATCTGGAATTTAGGTTTTGTTAGCTTTGTGTGCTTTACTTTAATGTGTTCTTAACTTTAATCAAAGAGCTGATGTGAATACGATCAATCTTCTTCGACAATTGTGGATTTCTTTTTCTTCCGTTTGAATTTTTGGTTCACAATTGGAATTGGAATTCTTTGGATATCTTGCTTCGAACTTTACGAAATGGCCTTATAGGGAACTGTATTAATTATCTTTTTTGTTTTTCTTTCTGAAGATTCAATTTCTTTTTTGTGAATTGTGAATCTATCTGTTTTAGGTTTTGGCGCTTCAAATGTTCATCTGAATTTGGGGGAAGAACAATGCGTTTCAAATTAAGCCAGTGTCTAGTTTTTTTTGG

Coding sequence (CDS)

ATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCTGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAGTACGCAGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTTCTGGAATTGGCTGGAAATGCAGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAA

Protein sequence

MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 8.4e-61
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAG+SK
Sbjct: 121 KAGASK 126

BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-60
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAGSSK
Sbjct: 121 KAGSSK 126

BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.4e-60
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGED 133
           K G+SK S  +D
Sbjct: 121 KTGASKPSAEDD 132

BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 9.3e-60
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KAGSSKASGGED 133
           KAG+SK S  ED
Sbjct: 121 KAGASKPSADED 132

BLAST of Cp4.1LG14g00050 vs. Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-59
Identity = 121/134 (90.30%), Postives = 127/134 (94.78%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGA+KKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDES 135
           KAG SKA   +D+S
Sbjct: 121 KAGGSKAVAADDDS 134

BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: E0CT43_VITVI (Histone H2A OS=Vitis vinifera GN=VIT_19s0014g05020 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.9e-62
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KA-GSSKASGGEDES 135
           KA GSSKASGG+D+S
Sbjct: 121 KAGGSSKASGGDDDS 135

BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: A0A0B0NVH6_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_22944 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-61
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAG-SSKASGGEDE 134
           KAG SSKASGG+++
Sbjct: 121 KAGTSSKASGGDED 134

BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: A0A0D2U3W2_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_009G427700 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-61
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAG-SSKASGGEDE 134
           KAG SSKASGG+++
Sbjct: 121 KAGTSSKASGGDED 134

BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: A0A0D2W6Q4_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_013G164500 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-61
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KA-GSSKASGGEDE 134
           KA GSSK SGG+D+
Sbjct: 121 KAGGSSKVSGGDDD 134

BLAST of Cp4.1LG14g00050 vs. TrEMBL
Match: A0A0D2QY96_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_004G028500 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.4e-61
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDE 134
           K G+SK SG +D+
Sbjct: 121 KTGTSKTSGADDD 133

BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 234.2 bits (596), Expect = 4.7e-62
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAG+SK
Sbjct: 121 KAGASK 126

BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 233.4 bits (594), Expect = 8.1e-62
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAGSSK
Sbjct: 121 KAGSSK 126

BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 232.6 bits (592), Expect = 1.4e-61
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGED 133
           K G+SK S  +D
Sbjct: 121 KTGASKPSAEDD 132

BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 230.7 bits (587), Expect = 5.2e-61
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KAGSSKASGGED 133
           KAG+SK S  ED
Sbjct: 121 KAGASKPSADED 132

BLAST of Cp4.1LG14g00050 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 198.7 bits (504), Expect = 2.2e-51
Identity = 109/132 (82.58%), Postives = 112/132 (84.85%), Query Frame = 1

Query: 2   AGRGKTLGSGASKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLE 61
           AG G T G     KAT   SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL 121
           YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSSKASGG 131
           P K G +K   G
Sbjct: 125 PSKVGKNKGDIG 136

BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|225461156|ref|XP_002282795.1| (PREDICTED: probable histone H2A.2 [Vitis vinifera])

HSP 1 Score: 244.6 bits (623), Expect = 9.9e-62
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KA-GSSKASGGEDES 135
           KA GSSKASGG+D+S
Sbjct: 121 KAGGSSKASGGDDDS 135

BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|823260568|ref|XP_012463007.1| (PREDICTED: histone H2A.6-like [Gossypium raimondii])

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-61
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KA-GSSKASGGEDE 134
           KA GSSK SGG+D+
Sbjct: 121 KAGGSSKVSGGDDD 134

BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|823221720|ref|XP_012443554.1| (PREDICTED: histone H2A.6-like [Gossypium raimondii])

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-61
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAG-SSKASGGEDE 134
           KAG SSKASGG+++
Sbjct: 121 KAGTSSKASGGDED 134

BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|823146482|ref|XP_012473137.1| (PREDICTED: probable histone H2A.1 [Gossypium raimondii])

HSP 1 Score: 242.3 bits (617), Expect = 4.9e-61
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDE 134
           K G+SK SG +D+
Sbjct: 121 KTGTSKTSGADDD 133

BLAST of Cp4.1LG14g00050 vs. NCBI nr
Match: gi|703083793|ref|XP_010092305.1| (putative histone H2A.1 [Morus notabilis])

HSP 1 Score: 241.9 bits (616), Expect = 6.4e-61
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 1

Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAG-SSKASGGEDES 135
           K G SSKA+GG+D+S
Sbjct: 121 KTGASSKAAGGDDDS 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
H2A6_ARATH8.4e-6197.62Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1[more]
H2A3_ARATH1.4e-6097.62Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1[more]
H2A1_ARATH2.4e-6092.42Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1[more]
H2A2_ARATH9.3e-6092.42Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1[more]
H2A7_WHEAT2.7e-5990.30Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3[more]
Match NameE-valueIdentityDescription
E0CT43_VITVI6.9e-6297.04Histone H2A OS=Vitis vinifera GN=VIT_19s0014g05020 PE=3 SV=1[more]
A0A0B0NVH6_GOSAR2.6e-6197.01Histone H2A OS=Gossypium arboreum GN=F383_22944 PE=3 SV=1[more]
A0A0D2U3W2_GOSRA2.6e-6197.01Histone H2A OS=Gossypium raimondii GN=B456_009G427700 PE=3 SV=1[more]
A0A0D2W6Q4_GOSRA2.6e-6197.01Histone H2A OS=Gossypium raimondii GN=B456_013G164500 PE=3 SV=1[more]
A0A0D2QY96_GOSRA3.4e-6195.49Histone H2A OS=Gossypium raimondii GN=B456_004G028500 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G54640.14.7e-6297.62 Histone superfamily protein[more]
AT4G27230.18.1e-6297.62 histone H2A 2[more]
AT1G51060.11.4e-6192.42 histone H2A 10[more]
AT3G20670.15.2e-6192.42 histone H2A 13[more]
AT1G54690.12.2e-5182.58 gamma histone variant H2AX[more]
Match NameE-valueIdentityDescription
gi|225461156|ref|XP_002282795.1|9.9e-6297.04PREDICTED: probable histone H2A.2 [Vitis vinifera][more]
gi|823260568|ref|XP_012463007.1|3.8e-6197.01PREDICTED: histone H2A.6-like [Gossypium raimondii][more]
gi|823221720|ref|XP_012443554.1|3.8e-6197.01PREDICTED: histone H2A.6-like [Gossypium raimondii][more]
gi|823146482|ref|XP_012473137.1|4.9e-6195.49PREDICTED: probable histone H2A.1 [Gossypium raimondii][more]
gi|703083793|ref|XP_010092305.1|6.4e-6195.56putative histone H2A.1 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR002119Histone_H2A
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008283 cell proliferation
biological_process GO:0008150 biological_process
cellular_component GO:0005618 cell wall
cellular_component GO:0005730 nucleolus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g00050.1Cp4.1LG14g00050.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 44..59
score: 4.7E-53coord: 73..87
score: 4.7E-53coord: 101..119
score: 4.7E-53coord: 15..37
score: 4.7E-53coord: 59..72
score: 4.7
IPR002119Histone H2ASMARTSM00414h2a4coord: 4..124
score: 1.2
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 12..90
score: 2.9
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 9..123
score: 3.4
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 9..126
score: 1.23
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 1..130
score: 2.0E

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g00050CmaCh16G008160Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g00050CmoCh16G008720Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g00050Carg24084Silver-seed gourdcarcpeB0308
The following gene(s) are paralogous to this gene:

None