Cp4.1LG13g08460 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG13g08460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L34
LocationCp4.1LG13 : 7971245 .. 7972466 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCTAAAATCTCAACCGTCAATTTGAAACGTACATCGTCCGTTGGATCTAGGGCTTCAAAAGTTTAAAACTTTACACTATATAAACAACTCCCTCTCCTGGATTTCTGCCGCTACTGCCTCGATTTTTCTTATAGACGCGTAGACACCCGAAATCAAGGGTAATTGAAGATGGTTCAGCGACTTACTTACCGTAAGCGCCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACTCCCGGTACCTTTTTTTGGTCCTGAATCAGTGTAATTCCTGCTCTTATGAGCCGTTTTTTCCCTTCAATTTCGTGACCATTTTGGGTGTTGTGCTGATGCGTTTTAGGTGGAAAGTTGATCTATCAAACCACCAAGAAGAGGGCCAGCGGTCCCAAATGTCCCGTTACCGGGAAGAGAATCCAAGGGGTATGTGATTTTATGCCTTCGATTCAAAGTTTTTCAGTTTTTGGGGTGTTTATAATTGCATTTGGGGATAGTCATTCTTCCTGAAACTGACATTGCGTCGCCCTGATAGCTAACTCTCAGTCTCTAGAACATATAATGGTGGCAATCAATTGTCATAGCTGAAAGAAAATGTAATTGTATTGTATTTTAGTTGTAATGTTTTGTTTGAACAGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGAAGAACCATAAACCGGGCATATGGTGGAGTGTTGTCAGGAAGTGCTGTCAGAGAGAGGTATGTGCTTCATTGAATCAGCCCTGTTGTTTTTGGTTTCCTTTGGGTTTTCTACCAAATTTAAGGAGTAATTCAACAATGGTTGCAGGATCATGCGGGCTTTTCTGGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGTTAGCTGCCAAGAGTTCAAAATGAGTATTTTTTGCTTGAATTTGCGAATTTTAGTGTTGATAGTGATTAGATGTTTCTGGGTTCTTCCTTAAATGGGTCATTGTTGACAAATCAATCCCCCAAGTGTCCTGTTTTATGATATCACCGTAACCTACTATGTCACAATTTCAGACCCTTTCTAGAGATTTTTGTATCATTACATTGCTGAATCTAATACCATCTTGCTTGCTCAATCTTATACCATCTTGATCGATCGATGAATGCGGATTTCAGGAAACAATGTTCTTGGGATGTTCTTCAGTATG

mRNA sequence

CCCCTAAAATCTCAACCGTCAATTTGAAACGTACATCGTCCGTTGGATCTAGGGCTTCAAAAGTTTAAAACTTTACACTATATAAACAACTCCCTCTCCTGGATTTCTGCCGCTACTGCCTCGATTTTTCTTATAGACGCGTAGACACCCGAAATCAAGGGTAATTGAAGATGGTTCAGCGACTTACTTACCGTAAGCGCCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACTCCCGGTGGAAAGTTGATCTATCAAACCACCAAGAAGAGGGCCAGCGGTCCCAAATGTCCCGTTACCGGGAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGAAGAACCATAAACCGGGCATATGGTGGAGTGTTGTCAGGAAGTGCTGTCAGAGAGAGGATCATGCGGGCTTTTCTGGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGTTAGCTGCCAAGAGTTCAAAATGAGTATTTTTTGCTTGAATTTGCGAATTTTAGTGTTGATAGTGATTAGATGTTTCTGGGTTCTTCCTTAAATGGGTCATTGTTGACAAATCAATCCCCCAAGTGTCCTGTTTTATGATATCACCGTAACCTACTATGTCACAATTTCAGACCCTTTCTAGAGATTTTTGTATCATTACATTGCTGAATCTAATACCATCTTGCTTGCTCAATCTTATACCATCTTGATCGATCGATGAATGCGGATTTCAGGAAACAATGTTCTTGGGATGTTCTTCAGTATG

Coding sequence (CDS)

ATGGTTCAGCGACTTACTTACCGTAAGCGCCACAGCTACGCCACCAAATCCAATCAGCACCGCGTTGTCAAGACTCCCGGTGGAAAGTTGATCTATCAAACCACCAAGAAGAGGGCCAGCGGTCCCAAATGTCCCGTTACCGGGAAGAGAATCCAAGGGATTCCGCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGAAGAACCATAAACCGGGCATATGGTGGAGTGTTGTCAGGAAGTGCTGTCAGAGAGAGGATCATGCGGGCTTTTCTGGTAGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAAATCCAAAAGGCAAAGGAAAAGTTAGCTGCCAAGAGTTCAAAATGA

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKSSK
BLAST of Cp4.1LG13g08460 vs. Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.7e-57
Identity = 115/120 (95.83%), Postives = 119/120 (99.17%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

BLAST of Cp4.1LG13g08460 vs. Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.3e-55
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRT+NRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLKIQK KEK AAK+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

BLAST of Cp4.1LG13g08460 vs. Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 108/120 (90.00%), Postives = 117/120 (97.50%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

BLAST of Cp4.1LG13g08460 vs. Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.9e-54
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAK 120
           EYKRSRL+RNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

BLAST of Cp4.1LG13g08460 vs. Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.5e-53
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARN RT+NRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

BLAST of Cp4.1LG13g08460 vs. TrEMBL
Match: A0A0A0LK03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338890 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-55
Identity = 116/120 (96.67%), Postives = 120/120 (100.00%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

BLAST of Cp4.1LG13g08460 vs. TrEMBL
Match: A0A068TVQ9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032233001 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.5e-55
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MAQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

BLAST of Cp4.1LG13g08460 vs. TrEMBL
Match: A0A0A0LP37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009690 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.6e-55
Identity = 115/120 (95.83%), Postives = 120/120 (100.00%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRT+NRAYGGV+SGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVVSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

BLAST of Cp4.1LG13g08460 vs. TrEMBL
Match: K4BBU9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.4e-55
Identity = 115/120 (95.83%), Postives = 119/120 (99.17%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL RNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

BLAST of Cp4.1LG13g08460 vs. TrEMBL
Match: K4BWT1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.4e-55
Identity = 115/120 (95.83%), Postives = 120/120 (100.00%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRA+GPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRANGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

BLAST of Cp4.1LG13g08460 vs. TAIR10
Match: AT1G26880.1 (AT1G26880.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 213.4 bits (542), Expect = 7.9e-56
Identity = 108/120 (90.00%), Postives = 117/120 (97.50%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

BLAST of Cp4.1LG13g08460 vs. TAIR10
Match: AT1G69620.1 (AT1G69620.1 ribosomal protein L34)

HSP 1 Score: 211.1 bits (536), Expect = 3.9e-55
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAK 120
           EYKRSRL+RNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

BLAST of Cp4.1LG13g08460 vs. TAIR10
Match: AT3G28900.1 (AT3G28900.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 208.4 bits (529), Expect = 2.5e-54
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARN RT+NRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

BLAST of Cp4.1LG13g08460 vs. NCBI nr
Match: gi|449459176|ref|XP_004147322.1| (PREDICTED: 60S ribosomal protein L34 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 1.7e-55
Identity = 116/120 (96.67%), Postives = 120/120 (100.00%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

BLAST of Cp4.1LG13g08460 vs. NCBI nr
Match: gi|661895753|emb|CDP00331.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-55
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MAQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

BLAST of Cp4.1LG13g08460 vs. NCBI nr
Match: gi|778655948|ref|XP_004138165.2| (PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-55
Identity = 115/120 (95.83%), Postives = 120/120 (100.00%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRT+NRAYGGV+SGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVVSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

BLAST of Cp4.1LG13g08460 vs. NCBI nr
Match: gi|460372822|ref|XP_004232223.1| (PREDICTED: 60S ribosomal protein L34 [Solanum lycopersicum])

HSP 1 Score: 221.9 bits (564), Expect = 6.3e-55
Identity = 115/120 (95.83%), Postives = 119/120 (99.17%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL RNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

BLAST of Cp4.1LG13g08460 vs. NCBI nr
Match: gi|460386223|ref|XP_004238799.1| (PREDICTED: 60S ribosomal protein L34 [Solanum lycopersicum])

HSP 1 Score: 221.9 bits (564), Expect = 6.3e-55
Identity = 115/120 (95.83%), Postives = 120/120 (100.00%), Query Frame = 1

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRA+GPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRANGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTINRAYGGVLSGSAVRERIMRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRT+NRAYGGVLSGSAVRERI+RAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RL34_TOBAC6.7e-5795.8360S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1[more]
RL34_PEA6.3e-5591.6760S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1[more]
RL341_ARATH1.4e-5490.0060S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1[more]
RL342_ARATH6.9e-5490.7660S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1[more]
RL343_ARATH4.5e-5390.0060S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LK03_CUCSA1.2e-5596.67Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338890 PE=4 SV=1[more]
A0A068TVQ9_COFCA1.5e-5596.67Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032233001 PE=4 SV=1[more]
A0A0A0LP37_CUCSA2.6e-5595.83Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009690 PE=4 SV=1[more]
K4BBU9_SOLLC4.4e-5595.83Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
K4BWT1_SOLLC4.4e-5595.83Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G26880.17.9e-5690.00 Ribosomal protein L34e superfamily protein[more]
AT1G69620.13.9e-5590.76 ribosomal protein L34[more]
AT3G28900.12.5e-5490.00 Ribosomal protein L34e superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449459176|ref|XP_004147322.1|1.7e-5596.67PREDICTED: 60S ribosomal protein L34 [Cucumis sativus][more]
gi|661895753|emb|CDP00331.1|2.2e-5596.67unnamed protein product [Coffea canephora][more]
gi|778655948|ref|XP_004138165.2|3.7e-5595.83PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus][more]
gi|460372822|ref|XP_004232223.1|6.3e-5595.83PREDICTED: 60S ribosomal protein L34 [Solanum lycopersicum][more]
gi|460386223|ref|XP_004238799.1|6.3e-5595.83PREDICTED: 60S ribosomal protein L34 [Solanum lycopersicum][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018065Ribosomal_L34e_CS
IPR008195Ribosomal_L34Ae
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g08460.1Cp4.1LG13g08460.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePRINTSPR01250RIBOSOMALL34coord: 26..43
score: 2.1E-29coord: 13..26
score: 2.1E-29coord: 44..54
score: 2.1E-29coord: 66..88
score: 2.1
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 1..120
score: 3.3
IPR008195Ribosomal protein L34AePFAMPF01199Ribosomal_L34ecoord: 1..96
score: 1.8
IPR018065Ribosomal protein L34e, conserved sitePROSITEPS01145RIBOSOMAL_L34Ecoord: 15..28
scor
NoneNo IPR availablePANTHERPTHR10759:SF13SUBFAMILY NOT NAMEDcoord: 1..120
score: 3.3

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g08460Cucumber (Gy14) v2cgybcpeB312
Cp4.1LG13g08460Cucumber (Gy14) v2cgybcpeB598
Cp4.1LG13g08460Cucumber (Gy14) v2cgybcpeB604
Cp4.1LG13g08460Melon (DHL92) v3.6.1cpemedB182
Cp4.1LG13g08460Melon (DHL92) v3.6.1cpemedB189
Cp4.1LG13g08460Melon (DHL92) v3.6.1cpemedB195
Cp4.1LG13g08460Melon (DHL92) v3.6.1cpemedB205
Cp4.1LG13g08460Silver-seed gourdcarcpeB0609
Cp4.1LG13g08460Silver-seed gourdcarcpeB0962
Cp4.1LG13g08460Cucumber (Chinese Long) v3cpecucB0191
Cp4.1LG13g08460Cucumber (Chinese Long) v3cpecucB0202
Cp4.1LG13g08460Cucumber (Chinese Long) v3cpecucB0210
Cp4.1LG13g08460Cucumber (Chinese Long) v3cpecucB0216
Cp4.1LG13g08460Wax gourdcpewgoB0262
Cp4.1LG13g08460Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG13g08460Cucurbita pepo (Zucchini)cpecpeB203
Cp4.1LG13g08460Cucurbita pepo (Zucchini)cpecpeB218
Cp4.1LG13g08460Cucurbita pepo (Zucchini)cpecpeB221
Cp4.1LG13g08460Cucumber (Gy14) v1cgycpeB0424
Cp4.1LG13g08460Cucumber (Gy14) v1cgycpeB0879
Cp4.1LG13g08460Cucurbita maxima (Rimu)cmacpeB113
Cp4.1LG13g08460Cucurbita maxima (Rimu)cmacpeB263
Cp4.1LG13g08460Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g08460Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g08460Wild cucumber (PI 183967)cpecpiB172
Cp4.1LG13g08460Wild cucumber (PI 183967)cpecpiB177
Cp4.1LG13g08460Cucumber (Chinese Long) v2cpecuB170
Cp4.1LG13g08460Cucumber (Chinese Long) v2cpecuB175
Cp4.1LG13g08460Bottle gourd (USVL1VR-Ls)cpelsiB140
Cp4.1LG13g08460Bottle gourd (USVL1VR-Ls)cpelsiB145
Cp4.1LG13g08460Watermelon (Charleston Gray)cpewcgB157
Cp4.1LG13g08460Watermelon (Charleston Gray)cpewcgB171
Cp4.1LG13g08460Watermelon (97103) v1cpewmB167
Cp4.1LG13g08460Watermelon (97103) v1cpewmB191
Cp4.1LG13g08460Melon (DHL92) v3.5.1cpemeB155
Cp4.1LG13g08460Melon (DHL92) v3.5.1cpemeB163
Cp4.1LG13g08460Melon (DHL92) v3.5.1cpemeB171