Cp4.1LG13g06770 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g06770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing family protein
LocationCp4.1LG13 : 4433126 .. 4434927 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATGCCCGCCATCTGTTCGATCATTTTCCTGACCCAAAACTAGCCCTTTGGAATGCAACTTTCAGAGGGTATGTCCGTAACGAGTTTTACAGGGAAGTGATTTTCTTGTCTGGGAAAATGAAGAGCATGGACGTGAGACCCAACTGCTTCACCTTCCCTCTTGTCCTCAAATCATGTGCAAAGATCAGTGCGTTTGTCGAAGGTGAACAGATACATTGTGAGGTGATTAAGGGAGGGTTTGAAGGGAACCAATTCGTGGCAACTACGCTGATCGATGTGTACTCTGTCGGGAGGGCGATTGGGTCTGCATACAAGGTGTTTGTTGGAATGCTTGAGAGAAATGTAGTTGCTTGGACTTCCATGATTAGTGGCTACATTTTGTGTAATGATGTGGTGTTTGCTCGCCGACTTTTCGACTTGGCACCAGAACGGGATGTCGTGCTTTGGAACATCATGGTTTCTGGTTATATTGAAATAGGGGATATGGCGGCTGCAAGAAAGCTGTTCGATGCAATGCCATACCGAGATGTGATGTCTTGGAATACAATGTTGAATGGGTATGCAAATAATGGAGACATTGAGGCTTGTGAGCAGCTGTTTGAAGAAATGCCTGAGCGGAATGTTTTCTCCTGGAATGGATTGATTGGGGCATATGCTCATAAGGGGTGTTTCTTTGAAGTATTGGGTTGTTTCAAACGAATGCTAATCGATGGCCTTGTTGTTCCCAATGATGCCACCCTCGTCACTGTGCTGTCCGCTTGTGCAAGATTAGGGGCTCTTGACTTGGGGAAGTGGGTGCATGTATATGCTGCAACAATCGGGTTTAAGGGAAGTATTTATGTTGGAAATGCATTAATAGACATGTATTCAAAATGCGGTGTAATCGAGAATGCAATGGAGGTTTTTGGAAGCATGGATTCAAAAGACGTTATCACTTGGAACTCTGTAATTTGTGGCTTGGCAACTCATGGATGTGGGGCGGATGCATTGAATTTGTTTCACCAGATGAAGATGACTGGCGAGAAGCCTGATGGAATCACGTTCATTGGAGTGCTGTGCTCCTGCACCCATCTTGGGTTAGTTGAAGAAGGCATCTCATATTTCAACTCAATGGTCCACGACTACTCAATTGTGCCTCAGATTGAGCATTATGGTTGTATGGTTGATCTATTTGGGCGAGCTGGACTTTTGGACCGAGCGATCGAGTTCGTGAAGAGGATGCCGATGGAAGCAGATGCTGTCATCTGGGCTGCTCTTCTAGGTGCATGCAGGATTCACAAAAACATCGATCTGGGTGAGTTAGCTCTTCAGAAACTCATTCAGCTTGAACCCAAGAACCCTGCAAACTATGTGATGCTATCAAATATTTACGGAGATGTTGGGAGATGGAAAGACGTTGCCCGGTTGAAGATATTAATGAGGGACACCGGGTCCAAAAAATTGCCTGGATGTAGCTTGATAGAGGTGAATGATAGCGTAGTTGAGTTTTATTCCTTGGATGAGAGGCATTCTCAGAGCGAGGAAATCTATGGTGTCTTAAAGGGATTGATGAAATTGTTAAGATCATTTGGGTATGAACCAAATATTATGGAACTCCTGCAGGGATGATGAGAACCAAAGTGCGAAACTAATCTTATTTACATGGAATGGATTGATGAACTTAGAGACATGGGGTTGTTTGTTTTTGTCTTTGTTTTTGTTTTTGGAAATGAAATTCTTGGTTCCCAAGGCGAAGAGATGAGACATTAATGAATGTGGTAAGAAATGAAGCAAGAAGAGTGGCAGCAAAAGCATAG

mRNA sequence

ATGGATTATGCCCGCCATCTGTTCGATCATTTTCCTGACCCAAAACTAGCCCTTTGGAATGCAACTTTCAGAGGGTATGTCCGTAACGAGTTTTACAGGGAAGTGATTTTCTTGTCTGGGAAAATGAAGAGCATGGACGTGAGACCCAACTGCTTCACCTTCCCTCTTGTCCTCAAATCATGTGCAAAGATCAGTGCGTTTGTCGAAGGTGAACAGATACATTGTGAGGTGATTAAGGGAGGGTTTGAAGGGAACCAATTCGTGGCAACTACGCTGATCGATGTGTACTCTGTCGGGAGGGCGATTGGGTCTGCATACAAGGTGTTTGTTGGAATGCTTGAGAGAAATGTAGTTGCTTGGACTTCCATGATTAGTGGCTACATTTTGTGTAATGATGTGGTGTTTGCTCGCCGACTTTTCGACTTGGCACCAGAACGGGATGTCGTGCTTTGGAACATCATGGTTTCTGGTTATATTGAAATAGGGGATATGGCGGCTGCAAGAAAGCTGTTCGATGCAATGCCATACCGAGATGTGATGTCTTGGAATACAATGTTGAATGGGTATGCAAATAATGGAGACATTGAGGCTTGTGAGCAGCTGTTTGAAGAAATGCCTGAGCGGAATGTTTTCTCCTGGAATGGATTGATTGGGGCATATGCTCATAAGGGGTGTTTCTTTGAAGTATTGGGTTGTTTCAAACGAATGCTAATCGATGGCCTTGTTGTTCCCAATGATGCCACCCTCGTCACTGTGCTGCGAAGAGATGAGACATTAATGAATGTGGTAAGAAATGAAGCAAGAAGAGTGGCAGCAAAAGCATAG

Coding sequence (CDS)

ATGGATTATGCCCGCCATCTGTTCGATCATTTTCCTGACCCAAAACTAGCCCTTTGGAATGCAACTTTCAGAGGGTATGTCCGTAACGAGTTTTACAGGGAAGTGATTTTCTTGTCTGGGAAAATGAAGAGCATGGACGTGAGACCCAACTGCTTCACCTTCCCTCTTGTCCTCAAATCATGTGCAAAGATCAGTGCGTTTGTCGAAGGTGAACAGATACATTGTGAGGTGATTAAGGGAGGGTTTGAAGGGAACCAATTCGTGGCAACTACGCTGATCGATGTGTACTCTGTCGGGAGGGCGATTGGGTCTGCATACAAGGTGTTTGTTGGAATGCTTGAGAGAAATGTAGTTGCTTGGACTTCCATGATTAGTGGCTACATTTTGTGTAATGATGTGGTGTTTGCTCGCCGACTTTTCGACTTGGCACCAGAACGGGATGTCGTGCTTTGGAACATCATGGTTTCTGGTTATATTGAAATAGGGGATATGGCGGCTGCAAGAAAGCTGTTCGATGCAATGCCATACCGAGATGTGATGTCTTGGAATACAATGTTGAATGGGTATGCAAATAATGGAGACATTGAGGCTTGTGAGCAGCTGTTTGAAGAAATGCCTGAGCGGAATGTTTTCTCCTGGAATGGATTGATTGGGGCATATGCTCATAAGGGGTGTTTCTTTGAAGTATTGGGTTGTTTCAAACGAATGCTAATCGATGGCCTTGTTGTTCCCAATGATGCCACCCTCGTCACTGTGCTGCGAAGAGATGAGACATTAATGAATGTGGTAAGAAATGAAGCAAGAAGAGTGGCAGCAAAAGCATAG

Protein sequence

MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKSCAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAWTSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVMSWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDGLVVPNDATLVTVLRRDETLMNVVRNEARRVAAKA
Homology
[Close]
BLAST of Cp4.1LG13g06770 vs. Swiss-Prot
Match: PP201_ARATH (Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2)

HSP 1 Score: 182.6 bits (462), Expect = 5.9e-45
Identity = 94/254 (37.01%), Postives = 150/254 (59.06%), Query Frame = 1 

Query: 3   YARHLFDHFPDPKLA-LWNATFRGYVRNEFYREVIFLSGKM-KSMDVRPNCFTFPLVLKS 62
           YAR LFD  P    + L N+  + Y+    Y +   L   + K     P+ FTF  + KS
Sbjct: 28  YARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKS 87

Query: 63  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 122
           C+      +G Q+H ++ + GF  + +V+T ++D+Y+    +G A   F  M  R+ V+W
Sbjct: 88  CSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSW 147

Query: 123 TSMISGYILCNDVVFARRLFDLAPE-RDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDV 182
           T++ISGYI C ++  A +LFD  P  +DVV++N M+ G+++ GDM +AR+LFD M ++ V
Sbjct: 148 TALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV 207

Query: 183 MSWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLID 242
           ++W TM++GY N  DI+A  +LF+ MPERN+ SWN +IG Y       E +  F+ M   
Sbjct: 208 ITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQAT 267

Query: 243 GLVVPNDATLVTVL 254
             + P+D T+++VL
Sbjct: 268 TSLDPDDVTILSVL 281

[Close]
BLAST of Cp4.1LG13g06770 vs. Swiss-Prot
Match: PP403_ARATH (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.5e-43
Identity = 90/254 (35.43%), Postives = 143/254 (56.30%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNE-FYREVIFLSGKMKSMDVRPNCFTFPLVLK 60
           + Y+  +F+  P P   LWN   +GY     F+  V  L   M++   RP+ +TFPLV+K
Sbjct: 59  LSYSSSVFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMK 118

Query: 61  SCAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVA 120
            C+       G  +H  V++ GF+ +  V T+ +D Y   + + SA KVF  M ERN V+
Sbjct: 119 VCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVS 178

Query: 121 WTSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDV 180
           WT+++  Y+   ++  A+ +FDL PER++  WN +V G ++ GD+  A+KLFD MP RD+
Sbjct: 179 WTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDI 238

Query: 181 MSWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLID 240
           +S+ +M++GYA  GD+ +   LFEE    +V +W+ LI  YA  G   E    F  M   
Sbjct: 239 ISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAK 298

Query: 241 GLVVPNDATLVTVL 254
             V P++  +V ++
Sbjct: 299 N-VKPDEFIMVGLM 311

[Close]
BLAST of Cp4.1LG13g06770 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.9e-41
Identity = 102/292 (34.93%), Postives = 150/292 (51.37%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           + YA  +F    +P L +WN  FRG+  +      + L   M S+ + PN +TFP VLKS
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           CAK  AF EG+QIH  V+K G + + +V T+LI +Y     +  A+KVF     R+VV++
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           T++I GY     +  A++LFD  P +DVV WN M+SGY E G+   A +LF  M   +V 
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 181 -SWNTML------------------------NGYANN--------------GDIEACEQL 240
              +TM+                        +G+ +N              G++E    L
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323

Query: 241 FEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDGLVVPNDATLVTVL 254
           FE +P ++V SWN LIG Y H   + E L  F+ ML  G   PND T++++L
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG-ETPNDVTMLSIL 374

[Close]
BLAST of Cp4.1LG13g06770 vs. Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-38
Identity = 82/242 (33.88%), Postives = 134/242 (55.37%), Query Frame = 1 

Query: 4   ARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKSCAK 63
           A  +F+   +P + L N+  R + +N    +  F+  +M+   +  + FT+P +LK+C+ 
Sbjct: 70  AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129

Query: 64  ISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSV--GRAIGSAYKVFVGMLERNVVAWT 123
            S     + +H  + K G   + +V   LID YS   G  +  A K+F  M ER+ V+W 
Sbjct: 130 QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189

Query: 124 SMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVMS 183
           SM+ G +   ++  ARRLFD  P+RD++ WN M+ GY    +M+ A +LF+ MP R+ +S
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVS 249

Query: 184 WNTMLNGYANNGDIEACEQLFEEM--PERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLID 242
           W+TM+ GY+  GD+E    +F++M  P +NV +W  +I  YA KG   E      +M+  
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309

[Close]
BLAST of Cp4.1LG13g06770 vs. Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-37
Identity = 93/266 (34.96%), Postives = 134/266 (50.38%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           + YA  + +    P     N+  R Y  +      + +  +M    V P+ ++F  VLK+
Sbjct: 90  VSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKA 149

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           CA    F EG QIH   IK G   + FV  TL++VY  GR                    
Sbjct: 150 CAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVY--GR-------------------- 209

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
               SGY        AR++ D  P RD V WN ++S Y+E G +  AR LFD M  R+V 
Sbjct: 210 ----SGYF-----EIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVE 269

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
           SWN M++GYA  G ++  +++F+ MP R+V SWN ++ AYAH GC+ EVL  F +ML D 
Sbjct: 270 SWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDS 324

Query: 241 LVVPNDATLVTVLRRDETLMNVVRNE 267
              P+  TLV+VL    +L ++ + E
Sbjct: 330 TEKPDGFTLVSVLSACASLGSLSQGE 324

[Close]
BLAST of Cp4.1LG13g06770 vs. TrEMBL
Match: A0A0A0KBY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017080 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.2e-132
Identity = 226/253 (89.33%), Postives = 233/253 (92.09%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M +ARHLFDHFPDPK+ LWNA  RGY  N FYREV+FL GKMKSMDVRPNCFTFPLVLKS
Sbjct: 1   MAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKS 60

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           CAKI AFVEGE+IHCEVIKGG EGNQFVATTLIDVYS GRAIGSAYK+FVGMLERN+VAW
Sbjct: 61  CAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAW 120

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMISGYILCN V  ARRLFDLAPERDVVLWNIMVSGYIEIGDM AARKLFD MPYRD M
Sbjct: 121 TSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTM 180

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
           SWNTMLNGYANNGD+EACEQLFEEMPERNVFSWNGLIG YAH GCFFEVL CFKRMLIDG
Sbjct: 181 SWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDG 240

Query: 241 LVVPNDATLVTVL 254
           LVVPNDATLVTVL
Sbjct: 241 LVVPNDATLVTVL 253

[Close]
BLAST of Cp4.1LG13g06770 vs. TrEMBL
Match: A5BCC4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030746 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.1e-105
Identity = 183/253 (72.33%), Postives = 205/253 (81.03%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M YAR LFD  PDP +ALWN+ FRGY ++E YREV+FL  +MK MD+RPNCFTFP+VLKS
Sbjct: 149 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKS 208

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           C KI+A +EGEQ+HC +IK GF GN FV TTLID+YS G  +G AYK+F  M ERNVVAW
Sbjct: 209 CGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAW 268

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMI+GYIL  D+V ARRLFDLAPERDVVLWNIMVSGYIE GDM  ARKLF  MP RDVM
Sbjct: 269 TSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVM 328

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
            WNT+L GYA NG++EA E LFEEMPERN+FSWN LIG YAH G FFEVLG FKRML + 
Sbjct: 329 FWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 388

Query: 241 LVVPNDATLVTVL 254
            V PNDATLVTVL
Sbjct: 389 DVPPNDATLVTVL 401

[Close]
BLAST of Cp4.1LG13g06770 vs. TrEMBL
Match: F6HEW4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03630 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.1e-105
Identity = 183/253 (72.33%), Postives = 205/253 (81.03%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M YAR LFD  PDP +ALWN+ FRGY ++E YREV+FL  +MK MD+RPNCFTFP+VLKS
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKS 60

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           C KI+A +EGEQ+HC +IK GF GN FV TTLID+YS G  +G AYK+F  M ERNVVAW
Sbjct: 61  CGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAW 120

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMI+GYIL  D+V ARRLFDLAPERDVVLWNIMVSGYIE GDM  ARKLF  MP RDVM
Sbjct: 121 TSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVM 180

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
            WNT+L GYA NG++EA E LFEEMPERN+FSWN LIG YAH G FFEVLG FKRML + 
Sbjct: 181 FWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 240

Query: 241 LVVPNDATLVTVL 254
            V PNDATLVTVL
Sbjct: 241 DVPPNDATLVTVL 253

[Close]
BLAST of Cp4.1LG13g06770 vs. TrEMBL
Match: W9RJB6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009882 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 2.5e-103
Identity = 174/253 (68.77%), Postives = 213/253 (84.19%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M +A  +FD  PDP +ALWNA FRGY +NE++REVI L  +MKS+DV PNC+TFP+V+KS
Sbjct: 1   MAHAHKVFDQIPDPNVALWNAMFRGYAKNEWHREVILLFCRMKSLDVMPNCYTFPVVIKS 60

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           C KI+A VEGE+I+CE+IKGGF  N +V TTLI++Y+ G  IG+A+KVF+ M ERNV AW
Sbjct: 61  CGKINALVEGEEINCELIKGGFRANPYVGTTLIEMYAGGGFIGAAHKVFLEMSERNVFAW 120

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMI+ YILC D+V ARRLFDLA ERDVVLWN ++SGYIE+G+M +A++LFD MP RDVM
Sbjct: 121 TSMINAYILCRDMVSARRLFDLATERDVVLWNTVISGYIELGNMVSAQELFDEMPNRDVM 180

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
           SWNTMLNGYA NG+I+ACE+LFEEM ERN+FSWN LIG YAH GCFFE+LG FKRML++G
Sbjct: 181 SWNTMLNGYARNGNIKACERLFEEMRERNIFSWNALIGGYAHNGCFFELLGSFKRMLVEG 240

Query: 241 LVVPNDATLVTVL 254
            V+PNDATLV VL
Sbjct: 241 DVLPNDATLVNVL 253

[Close]
BLAST of Cp4.1LG13g06770 vs. TrEMBL
Match: B9T6U7_RICCO (Pentatricopeptide repeat-containing protein, putative (Fragment) OS=Ricinus communis GN=RCOM_0055600 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.1e-101
Identity = 175/253 (69.17%), Postives = 206/253 (81.42%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M +A  LFD  P+P ++ WNA  +GY  N+ +REVI L  KM SMD+ PNCF+FP+V+KS
Sbjct: 114 MRHAHKLFDQIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKS 173

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
             KI+AF EGE++HC VIK G   N FV T LID+YS GR I SAY+VF  M+ERNVVAW
Sbjct: 174 SVKINAFKEGEELHCFVIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAW 233

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMI G+ILCND+  ARRLF+LAP+RDVVLWNIM+SGYI+IGD+  A++LF  MP +DVM
Sbjct: 234 TSMIKGFILCNDIETARRLFELAPQRDVVLWNIMISGYIDIGDLVRAQELFHKMPNKDVM 293

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
           SWNT+LNGYAN GDIEACE+LFEEMPERNVFSWNGLIG YAH GCF EVL  FKRML+DG
Sbjct: 294 SWNTLLNGYANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDG 353

Query: 241 LVVPNDATLVTVL 254
           +VVPNDATLVTVL
Sbjct: 354 IVVPNDATLVTVL 366

[Close]
BLAST of Cp4.1LG13g06770 vs. TAIR10
Match: AT1G13410.1 (AT1G13410.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 5.0e-58
Identity = 104/152 (68.42%), Postives = 123/152 (80.92%), Query Frame = 1 

Query: 102 IGSAYKVFVGMLERNVVAWTSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEI 161
           I SA KVF  M+E+NVV WTSMI+GY+L  D+V ARR FDL+PERD+VLWN M+SGYIE+
Sbjct: 44  IASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEM 103

Query: 162 GDMAAARKLFDAMPYRDVMSWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYA 221
           G+M  AR LFD MP RDVMSWNT+L GYAN GD+EACE++F++MPERNVFSWNGLI  YA
Sbjct: 104 GNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYA 163

Query: 222 HKGCFFEVLGCFKRMLIDGLVVPNDATLVTVL 254
             G   EVLG FKRM+ +G VVPNDAT+  VL
Sbjct: 164 QNGRVSEVLGSFKRMVDEGSVVPNDATMTLVL 195

[Close]
BLAST of Cp4.1LG13g06770 vs. TAIR10
Match: AT2G44880.1 (AT2G44880.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 182.6 bits (462), Expect = 3.3e-46
Identity = 94/254 (37.01%), Postives = 150/254 (59.06%), Query Frame = 1 

Query: 3   YARHLFDHFPDPKLA-LWNATFRGYVRNEFYREVIFLSGKM-KSMDVRPNCFTFPLVLKS 62
           YAR LFD  P    + L N+  + Y+    Y +   L   + K     P+ FTF  + KS
Sbjct: 28  YARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKS 87

Query: 63  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 122
           C+      +G Q+H ++ + GF  + +V+T ++D+Y+    +G A   F  M  R+ V+W
Sbjct: 88  CSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSW 147

Query: 123 TSMISGYILCNDVVFARRLFDLAPE-RDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDV 182
           T++ISGYI C ++  A +LFD  P  +DVV++N M+ G+++ GDM +AR+LFD M ++ V
Sbjct: 148 TALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV 207

Query: 183 MSWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLID 242
           ++W TM++GY N  DI+A  +LF+ MPERN+ SWN +IG Y       E +  F+ M   
Sbjct: 208 ITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQAT 267

Query: 243 GLVVPNDATLVTVL 254
             + P+D T+++VL
Sbjct: 268 TSLDPDDVTILSVL 281

[Close]
BLAST of Cp4.1LG13g06770 vs. TAIR10
Match: AT5G37570.1 (AT5G37570.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-44
Identity = 90/254 (35.43%), Postives = 143/254 (56.30%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNE-FYREVIFLSGKMKSMDVRPNCFTFPLVLK 60
           + Y+  +F+  P P   LWN   +GY     F+  V  L   M++   RP+ +TFPLV+K
Sbjct: 59  LSYSSSVFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMK 118

Query: 61  SCAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVA 120
            C+       G  +H  V++ GF+ +  V T+ +D Y   + + SA KVF  M ERN V+
Sbjct: 119 VCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVS 178

Query: 121 WTSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDV 180
           WT+++  Y+   ++  A+ +FDL PER++  WN +V G ++ GD+  A+KLFD MP RD+
Sbjct: 179 WTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDI 238

Query: 181 MSWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLID 240
           +S+ +M++GYA  GD+ +   LFEE    +V +W+ LI  YA  G   E    F  M   
Sbjct: 239 ISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAK 298

Query: 241 GLVVPNDATLVTVL 254
             V P++  +V ++
Sbjct: 299 N-VKPDEFIMVGLM 311

[Close]
BLAST of Cp4.1LG13g06770 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-42
Identity = 102/292 (34.93%), Postives = 150/292 (51.37%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           + YA  +F    +P L +WN  FRG+  +      + L   M S+ + PN +TFP VLKS
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           CAK  AF EG+QIH  V+K G + + +V T+LI +Y     +  A+KVF     R+VV++
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           T++I GY     +  A++LFD  P +DVV WN M+SGY E G+   A +LF  M   +V 
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 181 -SWNTML------------------------NGYANN--------------GDIEACEQL 240
              +TM+                        +G+ +N              G++E    L
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323

Query: 241 FEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDGLVVPNDATLVTVL 254
           FE +P ++V SWN LIG Y H   + E L  F+ ML  G   PND T++++L
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG-ETPNDVTMLSIL 374

[Close]
BLAST of Cp4.1LG13g06770 vs. TAIR10
Match: AT3G29230.1 (AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 161.4 bits (407), Expect = 8.0e-40
Identity = 82/242 (33.88%), Postives = 134/242 (55.37%), Query Frame = 1 

Query: 4   ARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKSCAK 63
           A  +F+   +P + L N+  R + +N    +  F+  +M+   +  + FT+P +LK+C+ 
Sbjct: 70  AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129

Query: 64  ISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSV--GRAIGSAYKVFVGMLERNVVAWT 123
            S     + +H  + K G   + +V   LID YS   G  +  A K+F  M ER+ V+W 
Sbjct: 130 QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189

Query: 124 SMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVMS 183
           SM+ G +   ++  ARRLFD  P+RD++ WN M+ GY    +M+ A +LF+ MP R+ +S
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVS 249

Query: 184 WNTMLNGYANNGDIEACEQLFEEM--PERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLID 242
           W+TM+ GY+  GD+E    +F++M  P +NV +W  +I  YA KG   E      +M+  
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309

[Close]
BLAST of Cp4.1LG13g06770 vs. NCBI nr
Match: gi|778709864|ref|XP_011656468.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 1.7e-132
Identity = 226/253 (89.33%), Postives = 233/253 (92.09%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M +ARHLFDHFPDPK+ LWNA  RGY  N FYREV+FL GKMKSMDVRPNCFTFPLVLKS
Sbjct: 1   MAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKS 60

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           CAKI AFVEGE+IHCEVIKGG EGNQFVATTLIDVYS GRAIGSAYK+FVGMLERN+VAW
Sbjct: 61  CAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAW 120

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMISGYILCN V  ARRLFDLAPERDVVLWNIMVSGYIEIGDM AARKLFD MPYRD M
Sbjct: 121 TSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTM 180

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
           SWNTMLNGYANNGD+EACEQLFEEMPERNVFSWNGLIG YAH GCFFEVL CFKRMLIDG
Sbjct: 181 SWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDG 240

Query: 241 LVVPNDATLVTVL 254
           LVVPNDATLVTVL
Sbjct: 241 LVVPNDATLVTVL 253

[Close]
BLAST of Cp4.1LG13g06770 vs. NCBI nr
Match: gi|659070967|ref|XP_008457507.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cucumis melo])

HSP 1 Score: 464.9 bits (1195), Expect = 9.6e-128
Identity = 220/253 (86.96%), Postives = 229/253 (90.51%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M +ARHLFDHF DPK+ LWNA FRGY    FY+EV+FL GKMKSM VRPNCFTFPLVLKS
Sbjct: 56  MAHARHLFDHFLDPKVELWNAIFRGYFHKAFYKEVVFLFGKMKSMGVRPNCFTFPLVLKS 115

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           CAKI AFVEGE+IH EVIKGGFEGNQFVATTLIDVYS GRAIGSAYKVFV MLERN+VAW
Sbjct: 116 CAKIGAFVEGEEIHSEVIKGGFEGNQFVATTLIDVYSAGRAIGSAYKVFVVMLERNIVAW 175

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMISGYILCN V  ARRLFDLAPERDVVLWNIMVSGYI+IGDM AARKLFD MPYRD M
Sbjct: 176 TSMISGYILCNGVALARRLFDLAPERDVVLWNIMVSGYIQIGDMKAARKLFDTMPYRDTM 235

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
           SWNTMLNGYANNGD+EACEQ+FEEMPERNVFSWNGLIG YAH G FFEVL CFKRMLIDG
Sbjct: 236 SWNTMLNGYANNGDVEACEQMFEEMPERNVFSWNGLIGGYAHNGRFFEVLRCFKRMLIDG 295

Query: 241 LVVPNDATLVTVL 254
           LVVPNDATLVTVL
Sbjct: 296 LVVPNDATLVTVL 308

[Close]
BLAST of Cp4.1LG13g06770 vs. NCBI nr
Match: gi|147806113|emb|CAN65480.1| (hypothetical protein VITISV_030746 [Vitis vinifera])

HSP 1 Score: 390.2 bits (1001), Expect = 3.0e-105
Identity = 183/253 (72.33%), Postives = 205/253 (81.03%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M YAR LFD  PDP +ALWN+ FRGY ++E YREV+FL  +MK MD+RPNCFTFP+VLKS
Sbjct: 149 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKS 208

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           C KI+A +EGEQ+HC +IK GF GN FV TTLID+YS G  +G AYK+F  M ERNVVAW
Sbjct: 209 CGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAW 268

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMI+GYIL  D+V ARRLFDLAPERDVVLWNIMVSGYIE GDM  ARKLF  MP RDVM
Sbjct: 269 TSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVM 328

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
            WNT+L GYA NG++EA E LFEEMPERN+FSWN LIG YAH G FFEVLG FKRML + 
Sbjct: 329 FWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 388

Query: 241 LVVPNDATLVTVL 254
            V PNDATLVTVL
Sbjct: 389 DVPPNDATLVTVL 401

[Close]
BLAST of Cp4.1LG13g06770 vs. NCBI nr
Match: gi|731370368|ref|XP_010647036.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Vitis vinifera])

HSP 1 Score: 390.2 bits (1001), Expect = 3.0e-105
Identity = 183/253 (72.33%), Postives = 205/253 (81.03%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M YAR LFD  PDP +ALWN+ FRGY ++E YREV+FL  +MK MD+RPNCFTFP+VLKS
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKS 60

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           C KI+A +EGEQ+HC +IK GF GN FV TTLID+YS G  +G AYK+F  M ERNVVAW
Sbjct: 61  CGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAW 120

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMI+GYIL  D+V ARRLFDLAPERDVVLWNIMVSGYIE GDM  ARKLF  MP RDVM
Sbjct: 121 TSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVM 180

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
            WNT+L GYA NG++EA E LFEEMPERN+FSWN LIG YAH G FFEVLG FKRML + 
Sbjct: 181 FWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 240

Query: 241 LVVPNDATLVTVL 254
            V PNDATLVTVL
Sbjct: 241 DVPPNDATLVTVL 253

[Close]
BLAST of Cp4.1LG13g06770 vs. NCBI nr
Match: gi|645276340|ref|XP_008243240.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Prunus mume])

HSP 1 Score: 388.7 bits (997), Expect = 8.7e-105
Identity = 179/253 (70.75%), Postives = 208/253 (82.21%), Query Frame = 1 

Query: 1   MDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKS 60
           M YA  +FD  PDP  ALWNA FRGY +NE +REVI L G+MKSMD+ PNCFTFP+V+KS
Sbjct: 1   MAYAHKVFDGIPDPNFALWNAMFRGYAKNESHREVILLFGRMKSMDIMPNCFTFPVVIKS 60

Query: 61  CAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAW 120
           C ++   VEGE++HC VIKGGF  N +V TTLI++Y+    IG+AYKVF  M ERNVVAW
Sbjct: 61  CGRLKRLVEGEEVHCVVIKGGFRANPYVGTTLIEMYAARGVIGAAYKVFGEMFERNVVAW 120

Query: 121 TSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVM 180
           TSMI+GYILC D+V A+RLF LAPERD+VLWN MVSGYIE+ DM AARKLFD MP RDVM
Sbjct: 121 TSMINGYILCGDMVSAQRLFHLAPERDIVLWNTMVSGYIELRDMVAARKLFDDMPRRDVM 180

Query: 181 SWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDG 240
            WNT+LNGYA+NG+I+ACE+LFEEMPERNVFSWNGLIG YA  G FF+VLG FKRML +G
Sbjct: 181 GWNTVLNGYASNGEIDACEKLFEEMPERNVFSWNGLIGGYARNGRFFQVLGSFKRMLSEG 240

Query: 241 LVVPNDATLVTVL 254
            V+PNDATLVTVL
Sbjct: 241 DVLPNDATLVTVL 253

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g06770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP201_ARATH5.9e-4537.01Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN... [more]
PP403_ARATH2.5e-4335.43Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis th... [more]
PPR21_ARATH8.9e-4134.93Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
PP261_ARATH1.4e-3833.88Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN... [more]
PP321_ARATH2.0e-3734.96Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG13g06770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBY4_CUCSA1.2e-13289.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017080 PE=4 SV=1[more]
A5BCC4_VITVI2.1e-10572.33Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030746 PE=4 SV=1[more]
F6HEW4_VITVI2.1e-10572.33Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03630 PE=4 SV=... [more]
W9RJB6_9ROSA2.5e-10368.77Uncharacterized protein OS=Morus notabilis GN=L484_009882 PE=4 SV=1[more]
B9T6U7_RICCO1.1e-10169.17Pentatricopeptide repeat-containing protein, putative (Fragment) OS=Ricinus comm... [more]
BLAST of Cp4.1LG13g06770 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13410.15.0e-5868.42 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G44880.13.3e-4637.01 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G37570.11.4e-4435.43 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G08070.15.0e-4234.93 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G29230.18.0e-4033.88 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG13g06770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778709864|ref|XP_011656468.1|1.7e-13289.33PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis s... [more]
gi|659070967|ref|XP_008457507.1|9.6e-12886.96PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cucumis m... [more]
gi|147806113|emb|CAN65480.1|3.0e-10572.33hypothetical protein VITISV_030746 [Vitis vinifera][more]
gi|731370368|ref|XP_010647036.1|3.0e-10572.33PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Vitis vinifera... [more]
gi|645276340|ref|XP_008243240.1|8.7e-10570.75PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g06770.1Cp4.1LG13g06770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 181..210
score: 4.2E-9coord: 211..240
score: 1.3E-5coord: 118..145
score: 0.0082coord: 149..177
score: 6.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 181..210
score: 1.1E-8coord: 149..174
score: 8.0E-4coord: 211..245
score: 5.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 178..212
score: 12.123coord: 85..115
score: 5.755coord: 50..84
score: 6.741coord: 213..243
score: 5.799coord: 15..49
score: 7.673coord: 147..177
score: 9.131coord: 116..146
score: 7
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..253
score: 4.0E
NoneNo IPR availablePANTHERPTHR24015:SF469PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 1..253
score: 4.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g06770CmaCh15G009110Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g06770CmoCh15G009490Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g06770ClCG08G005040Watermelon (Charleston Gray)cpewcgB182
Cp4.1LG13g06770Lsi08G003910Bottle gourd (USVL1VR-Ls)cpelsiB160
Cp4.1LG13g06770Bhi04G001583Wax gourdcpewgoB0254
Cp4.1LG13g06770Carg26882Silver-seed gourdcarcpeB1316
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g06770Cucumber (Chinese Long) v3cpecucB0228
Cp4.1LG13g06770Cucumber (Chinese Long) v3cpecucB0234
Cp4.1LG13g06770Wax gourdcpewgoB0260
Cp4.1LG13g06770Cucurbita pepo (Zucchini)cpecpeB022
Cp4.1LG13g06770Cucurbita pepo (Zucchini)cpecpeB205
Cp4.1LG13g06770Cucumber (Gy14) v1cgycpeB0747
Cp4.1LG13g06770Cucumber (Gy14) v1cgycpeB0952
Cp4.1LG13g06770Cucurbita maxima (Rimu)cmacpeB422
Cp4.1LG13g06770Cucurbita maxima (Rimu)cmacpeB707
Cp4.1LG13g06770Cucurbita maxima (Rimu)cmacpeB710
Cp4.1LG13g06770Cucurbita moschata (Rifu)cmocpeB383
Cp4.1LG13g06770Cucurbita moschata (Rifu)cmocpeB659
Cp4.1LG13g06770Cucurbita moschata (Rifu)cmocpeB663
Cp4.1LG13g06770Wild cucumber (PI 183967)cpecpiB192
Cp4.1LG13g06770Wild cucumber (PI 183967)cpecpiB195
Cp4.1LG13g06770Cucumber (Chinese Long) v2cpecuB190
Cp4.1LG13g06770Cucumber (Chinese Long) v2cpecuB194
Cp4.1LG13g06770Bottle gourd (USVL1VR-Ls)cpelsiB148
Cp4.1LG13g06770Watermelon (Charleston Gray)cpewcgB172
Cp4.1LG13g06770Watermelon (97103) v1cpewmB172
Cp4.1LG13g06770Watermelon (97103) v1cpewmB178
Cp4.1LG13g06770Melon (DHL92) v3.5.1cpemeB160
Cp4.1LG13g06770Melon (DHL92) v3.5.1cpemeB170
Cp4.1LG13g06770Cucumber (Gy14) v2cgybcpeB616
Cp4.1LG13g06770Cucumber (Gy14) v2cgybcpeB737
Cp4.1LG13g06770Melon (DHL92) v3.6.1cpemedB187
Cp4.1LG13g06770Melon (DHL92) v3.6.1cpemedB203
Cp4.1LG13g06770Silver-seed gourdcarcpeB1175