Cp4.1LG13g04660 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g04660
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionReplication factor C subunit 5
LocationCp4.1LG13 : 6038030 .. 6047162 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGACGAATGGTTACACAGAAGCCGTTTAGCGCCATATTCATATAATTATAAATAAATAAATAAGAAATTGAAAAGAGTGGGAAAAAACACAGCCGGTCCACCTCAAGTCTCCGATCGCGCAGCCACCACGACGCCGAGCGAAAATCCACATTTCTGAGCATTTTGGTCTGGTTCCAGTTCCGAAATTGCTAATCGATGTCGGAAGCAATCGCCGTGATGGATATTGACGACGATAATGGCAACAACGAAGATGAAAAGTCAGTCGAGGGCAAAAACGTCGCCAATCCTGCAGACGCACCCGACGGTAAAGCGATACCCTGGGTCGAGAAGTTCCGGCCCAAGTCTCTCGCCGATGTTGCTGCCCACCGCGACATTGTAGACACCAGTACGACTTCTACACTGTAAAATAGACTGCTCGACACATTAGGGTTCTGGCTTTCAATGGTTTAGTCTTTACTTTACTTCTATTTCACACTCAATCTGAAAGTAGGGACTCGCTTGTAGTTGAAAGAATAGTTTAGAACAGTGAAATTTGATAAGGAATTTATGTGTTTGTCGATTAATTTCTCGATTTTGCATAACCTATGATTTGTTATTTCAATTTTCACGTTCTTATTTTTGTTGTCTCTTGGTTTTGTGTCTTTTATGTGGAATGTTAACTAGTCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTATGGCCCTCCTGGCACTGGCAAGACATCAACCATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATACTGGAGCTGAATGCATCAGACGATAGAGGGATCGATGTTGTTAGACAGCAGATTCAAGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGTATGATTAATTATTTATCATTTCCTTTCCCTCTTGCTTTCCTTGGCAGTTAGGCTAAACTATAACTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGGTTGTGGAAAACTCTCCCTAGCAAATGCATTTTAAATCCTTGAGGGAAAGCCCAAAGAGGACAATATCTTCAAGCAATGGGCTTGGGCTGTTACAAATGGTATCAAAGCCATAAACCGGGCAGTGTGTCAGCGAGGATGCTAAGCCCCGAAGGGGGTGGGATTGTGAGATTCCACATCGATTGGAGAGGGGAACGAGTGCTAACGAGGACGCTGGGCTCCAAAGGGGAGTGAATTGTGAGATCCCACATCGATTGGAGAGTGGAATGAGTGTCAATGAGGACACTGGGCTCCTAAGGAGGGTGAATTGTGAGATCCCACATCGGTTGGAGAGGAGAATTTAGCATTTTTTATAATGTTTTGGAAACCTCTCCCTAGCAAACCTTGAGGGTGCCCAAAAGGGAAAGTTCAAAGAAGACAATATCTACTAGCGGTGGGGTGTGGTATAATACATCTGGCAAAAGATCACTCAGCAAGCAGACTATTTCATTTTGAATTATATGATGGTCTATCAACGCTGATGGCTTATTGATACAAATTGTCTTCTACATATCTCAACAAAATTTATGTATAATACACCATTTTTATGCAGTTTGTAACATCTAAATTTGCAGGGCAAAAGCATCTGTAAAATTGGTACTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTGCGTAGAGGTTTCTCTCATACATTGCTACTCTCATCTCTTTCTTCGTCTTTCATTCCCTAAACCTGTTGTTGTGATATTTGTCTTCATGCAGTAATTGAGAAATACACAAAAAATACACGGTTTGCTCTTATCTGTAATCATGTCAATAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGTTTTCGATTTGCTCCCCTTGATAACGTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTACGTAGGCTCCCTTGTTTCCCATACAATACATGCATAAAAAGTCGGATGGTTTGGCATCTATGGTGTATTGATGTTTAATGGCATTTTCCTTTGTTTTATATTCTGATATATTATTCAATCTATCATTTTAGCTCAGTAAATAACGGGGTAGAATGCACAACGTCTCTCTCTTCAAATCCCGTTTTCCAAGGAAATTTTAAGTAGATTCTTTGAACTCCTTATTGTTCAATGGACATGTAATGGTTATTACTCTTGAAGTTTCTATCGGATGTCCTGTCCAACTTGTCGTCGATGATATCTTTGCTTTCCATAAAATTTCACTTTTAAAAAGAAAATGTAATTCATTGAACATTGGTTGATTTCGGAGGTGATTTTAGCTGGATTCTATGCATTTTTTGAACGTTGTCTATTGAACTGTTTTACTCAATTTTTTAGAATCTATACTGTGCCATGTCCCTTGAACGTACGTATAATGCTCTATACCTGAATGATAATCAGGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGGTAAGAGTGTTTTTATTTTAGTATTGTTCTTTGACTTTGGTGGTTTTATTTTTTTTTTCTTTTTTTTTAGTTCAGTATGGGGGTGTGAGGATTTGAACGTCATACCTTTTGATCGATGGTATACACTTTATGCTAGTTGAGCTTTGTTCAATTTAACATAGTAGGTCATAGTAGTTAAGTGATGACTTAATTTTACTAGAATTAAGAAATATGGTATAAATGGAAAACACATCATGTCCGTAATATGAGATGTAGGCAACTTGTTCCTCTTTATTAAAGATTAAGACTGTTATCTTATCCTCTTACACTATCACTGTTAAAGTGGTTTTTCACTGCTCTATTTCTCACCCTTACCTTCTAACTAGTAACGTCCATGGACTGCAGAGATGGACGTTAATCACTACTTGAAAATTTGGAGGAAACGATAAGGACAACCCTAGAGTAATGGCTTAGCGACCCTAGTAAAAACTAGCACCTCTTGAACACACGACCCATTAGTTGAAAATTTGGAGCAAGTGATAAGGACAACTCTAGAGATCTTGCTTAGCAACCCTGATAAAAATTAGCATCTATTAAATTAAAAACTTTTTTACTCACAGGATACCACTCAAAGGGAAGCAAGATGTTTATCGTTGATGATCAAATACCTTGTGGAAGAAGGCTAGTTCAAATCAAATGATCAATCACTCCACAAGTTTGATGATCAACCAGGCTTGAATAATTCTAAGTCATTTGTGCAAACAACACTGAACTAAGTACCGTAAGACTCTTGACTTAAAAGGAGGAGAGAACTCTCAACTCAACATTTTCATTCAACAACATTCTAGGTTACAAATGAACATAAGTTGGCTTATGTATGGCCAACCAAGAACTCTAACTTGTTTAAATTAAAATAAGCAATATTAACCTAATAAAACGTACAAAAATGTACCTAAAACATCTCAAAGTAATGTTTACAGCTGAGGGAGGGGAGTGGGCCTTAGCTCTTATAAAAGAAGGCCAACAATTGAAGTCAACAAAATTACATAAATCAACCAAAAAAAACTAAAATACATAACTATTACAAGTGCTTAACCAAAATTTAAGTCATCTCATGTAATAGTCCAAGCCCACCGCTATCTCTCAAGGTTTTTAAAACGCATATGCTAGGAAGAGGTTTCCACACCCTTATAAAAAATGCTTCGTTCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGGTGGTTTTAGTTCATATCAGGAAGTTTCAAGGGTTTAACTTTATCTAGTTTTCTCAATATTTCATGTGTTGAAGTCTCACAGAATTGAGCTGTGATTTCAGCAACAGAGAAAAGAAGAAAGTAATTCAAATATATACTAACCATTTTCAGTTCTTTTCTTCTGTTAGTACTATGAGAAATGATCAAACTATGAATAAGAAAGGCCTTAAACCTCGCACAGCAATCAGCATGTTTTGGAATTTTGACCATTGTGTACCCTTAAAATCAATGCCTCGTGCAACATTCTGTTGCAACTCATAGATCAATAGATGACAGTTACACATGTTATTTAATTCATTAGTTGTTACTTTGTGAACCTGATGACTTTTTTGAAATTTTGTCTTTTTTACGTAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGTAATTGGTTTTCTTTGGAGCTTTCCATTTATTTTGATGTGTTTTGCCAGTTTTATTTATTTCTACCTATCTCGTTTACAGGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTGAGTGCTTTTTCTTATTTTGTATCATTTCTAAGTGATGATTTGTGCTTGACTTTCCTCTCTGCTCNTTTCCAAGGAAATTTTAAGTAGATTCTTTGAACTCCTTATTGTTCAATGGACATGTAATGGTTATTACTCTTGAAGTTTCTATCGGATGTCCTGTCCAACTTGTCGTCGATGATATCTTTGCTTTCCATAAAATTTCACTTTTAAAAAGAAAATGTAATTCATTGAACATTGGTTGATTTCGGAGGTGATTTTAGCTGGATTCTATGCATTTTTTGAACGTTGTCTATTGAACTGTTTTACTCAATTTTTTAGAATCTATACTGTGCCATGTCCCTTGAACGTACGTATAATGCTCTATACCTGAATGATAATCAGGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGGTAAGAGTGTTTTTATTTTAGTATTGTTCTTTGACTTTGGTGGTTTTATTTTTTTTTTCTTTTTTTTTAGTTCAGTATGGGGGTGTGAGGATTTGAACGTCATACCTTTTGATCGATGGTATACACTTTATGCTAGTTGAGCTTTGTTCAATTTAACATAGTAGGTCATAGTAGTTAAGTGATGACTTAATTTTACTAGAATTAAGAAATATGGTATAAATGGAAAACACATCATGTCCGTAATATGAGATGTAGGCAACTTGTTCCTCTTTATTAAAGATTAAGACTGTTATCTTATCCTCTTACACTATCACTGTTAAAGTGGTTTTTCACTGCTCTATTTCTCACCCTTACCTTCTAACTAGTAACGTCCATGGACTGCAGAGATGGACGTTAATCACTACTTGAAAATTTGGAGGAAACGATAAGGACAACCCTAGAGTAATGGCTTAGCGACCCTAGTAAAAACTAGCACCTCTTGAACACACGACCCATTAGTTGAAAATTTGGAGCAAGTGATAAGGACAACTCTAGAGATCTTGCTTAGCAACCCTGATAAAAATTAGCATCTATTAAATTAAAAACTTTTTTACTCACAGGATACCACTCAAAGGGAAGCAAGATGTTTATCGTTGATGATCAAATACCTTGTGGAAGAAGGCTAGTTCAAATCAAATGATCAATCACTCCACAAGTTTGATGATCAACCAGGCTTGAATAATTCTAAGTCATTTGTGCAAACAACACTGAACTAAGTACCGTAAGACTCTTGACTTAAAAGGAGGAGAGAACTCTCAACTCAACATTTTCATTCAACAACATTCTAGGTTACAAATGAACATAAGTTGGCTTATGTATGGCCAACCAAGAACTCTAACTTGTTTAAATTAAAATAAGCAATATTAACCTAATAAAACGTACAAAAATGTACCTAAAACATCTCAAAGTAATGTTTACAGCTGAGGGAGGGGAGTGGGCCTTAGCTCTTATAAAAGAAGGCCAACAATTGAAGTCAACAAAATTACATAAATCAACCAAAAAAAACTAAAATACATAACTATTACAAGTGCTTAACCAAAATTTAAGTCATCTCATGTAATAGTCCAAGCCCACCGCTATCTCTCAAGGTTTTTAAAACGCATATGCTAGGAAGAGGTTTCCACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACTGATGTGGGATCTCACAATCCACCCTCGGAGCCCAGCGTCCTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACTCCTCAATCCATCCCCCTTCGGGCCTCAGTCTCCTCTTTGTTTGCTAGGAAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTGTCCAACCGATGTGGGCTCACCCTTATAAAGAAGCGGAGAAGCCCGAAAGGAAAAGCCCAAATAGAACAATATCTGCTTACAGTGGGCTTAAGCCATTACATACATCTTCTTGATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGGTGGTTTTAGTTCATATCAGGAAGTTTCAAGGGTTTAACTTTATCTAGTTTTCTCAATATTTCATGTGTTGAAGTCTCACAGAATTGAGCTGTGATTTCAGCAACAGAGAAAAGAAGAAAGTAATTCAAATATATACTAACCATTTTCAGTTCTTTTCTTCTGTTAGTACTATGAGAAATGATCAAACTATGAATAAGAAAGGCCTTAAACCTCGCACAGCAATCAGCATGTTTTGGAATTTTGACCATTGTGTACCCTTAAAATCAATGCCTCGTGCAACATTCTGTTGCAACTCATAGATCAATAGATGACAGTTACACATGTTATTTAATTCATTAGTTGTTACTTTGTGAACCTGATGACTTTTTTGAAATTTTGTCTTTTTTACGTAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGTAATTGGTTTTCTTTGGAGCTTTCCATTTATTTTGATGTGTTTTGCCAGTTTTATTTATTTCTACCTATCTCGTTTACAGGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTGAGTGCTTTTTCTTATTTTGTATCATTTCTAAGTGATGATTTGTGCTTGACTTTCCTCTCTGCTCAATTTATGTAGGTTTGTTTTCAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTATGCATCGATCTTTCTACTCGTATAATTTCTCGTTAAATTTTATTATTTTATTATATTAAAATATATATGATCTGCAAAATAATGGACACCGTCGTCAACTTGAACAAACATTGAAAGATACTCGACTTTTTGATGTCGATGTTCAACATACGCATATATTCGACAATAAGTAAACCAGAAGGTTTAAAAATTTTGGTTTATTATTATTATCATCATCATTTGGATAAGGAAGAGCTTAGTAAGTTAAACGAGGATTTTGACATATAAGTAGAAAAGGACAAGGGAATCTTAGTTTTCCTATCCAACTTCTAAAACATTCTTTCTCAAGCTGAAAACACTTCTCCAGCTGTATTCCCTTTACGTGCACTATCATAGAATTATGCTGCAGTTTTCTTTATGGATAAACATGAAGGACATTCTATCATATGATTTGGTGTTATCTTCTGATCTTATCTTTTCAGTTTGAAAAAGCATGGTCAACTGCTGGACCTAACACAGAATTATTTCTAACAAAGCTTTGAACATGAATCAATGATCTCATTAGTTGAAAAAGACTTGGCTAATTAGCATATACTTGCATTGTTTGTAAGCTGTAACCTCACCCAACTGTACAGTGAATTTATCCCACTTATCAATGGAACATATTAGATTTTAAAGTTTTCGAAGACCGGGAGATAATGACTTGTCATGACACCTTTTTAACGAGTATGAATGTAACAACCTAAATCCACCGTTAGCAAATATTGTCCTCTTTGGACTTACCCTTTTGGGTCTCTCCAGACGCGTTTTAAAAACCTTTAAGGGAAGCTCGAAAAGGAAACCTCAAAGAAGACAATATATGCTAGTGGTGGGTTTGGGCTGGAAATAAAGCTATAGAAGTCCATATTTGCGCCCATGAGATTTCTTAACTCGATCAATTGTGTGTATGTTATGTTTTTTAATCTGTTACTGAATTAACCAGTTTGAGTGGGTGCTATTTGTAGGTACAGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACTCGAGCTAGATCTGCACTTGTCGCTGCTGCACAGTAGTTTTCGTGAAGCGAGATTTTGTAACGTGTTAGGGCGTTTTGTTCACCAACCATCTGTCGCGCCCGTGTGCATGGATTAGGTATGAACTGTAGAGAATGTGAACATATTCTTCATTTGACTTCCAGCTTTTGGTGCTAAAAGTAAATGCTGACATTGATGTTCTTTGTATGGGAAGGAAATGTAATATTTGGAGCTTTGAAAGTCTTGAAGAAAAGGTTAGATAACATTTAAAGCATTTATTTGATCTTGTTGGACTGGTTCACTTCCAATATTTCGGCACATGCTTATCTTTAACAGTAGTTTGTCCACAACCACCTCATGCGTGCTGAATTTGTTTATTGCATTATTGAGCTTTACAATACTTTTTTCTTCACCCAAGGGTTGGCGATTTTTTATTCAACTTTCATCGAAAATAAGAAAGAATTGTATGCTTCTAGATAAGCATGGATCAGTTGGTTGGATAATGCCTT

mRNA sequence

CGGACGAATGGTTACACAGAAGCCGTTTAGCGCCATATTCATATAATTATAAATAAATAAATAAGAAATTGAAAAGAGTGGGAAAAAACACAGCCGGTCCACCTCAAGTCTCCGATCGCGCAGCCACCACGACGCCGAGCGAAAATCCACATTTCTGAGCATTTTGGTCTGGTTCCAGTTCCGAAATTGCTAATCGATGTCGGAAGCAATCGCCGTGATGGATATTGACGACGATAATGGCAACAACGAAGATGAAAAGTCAGTCGAGGGCAAAAACGTCGCCAATCCTGCAGACGCACCCGACGGTAAAGCGATACCCTGGGTCGAGAAGTTCCGGCCCAAGTCTCTCGCCGATGTTGCTGCCCACCGCGACATTGTAGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTATGGCCCTCCTGGCACTGGCAAGACATCAACCATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATACTGGAGCTGAATGCATCAGACGATAGAGGGATCGATGTTGTTAGACAGCAGATTCAAGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTGCGTAGAGTAATTGAGAAATACACAAAAAATACACGGTTTGCTCTTATCTGTAATCATGTCAATAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGTTTTCGATTTGCTCCCCTTGATAACGTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTTGTTTTCAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACTCGAGCTAGATCTGCACTTGTCGCTGCTGCACAGTAGTTTTCGTGAAGCGAGATTTTGTAACGTGTTAGGGCGTTTTGTTCACCAACCATCTGTCGCGCCCGTGTGCATGGATTAGGTATGAACTGTAGAGAATGTGAACATATTCTTCATTTGACTTCCAGCTTTTGGTGCTAAAAGTAAATGCTGACATTGATGTTCTTTGTATGGGAAGGAAATGTAATATTTGGAGCTTTGAAAGTCTTGAAGAAAAGATAAGCATGGATCAGTTGGTTGGATAATGCCTT

Coding sequence (CDS)

ATGTCGGAAGCAATCGCCGTGATGGATATTGACGACGATAATGGCAACAACGAAGATGAAAAGTCAGTCGAGGGCAAAAACGTCGCCAATCCTGCAGACGCACCCGACGGTAAAGCGATACCCTGGGTCGAGAAGTTCCGGCCCAAGTCTCTCGCCGATGTTGCTGCCCACCGCGACATTGTAGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTATGGCCCTCCTGGCACTGGCAAGACATCAACCATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATACTGGAGCTGAATGCATCAGACGATAGAGGGATCGATGTTGTTAGACAGCAGATTCAAGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTGCGTAGAGTAATTGAGAAATACACAAAAAATACACGGTTTGCTCTTATCTGTAATCATGTCAATAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGTTTTCGATTTGCTCCCCTTGATAACGTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTTGTTTTCAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACTCGAGCTAGATCTGCACTTGTCGCTGCTGCACAGTAG

Protein sequence

MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTLLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTLFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ
Homology
[Close]
BLAST of Cp4.1LG13g04660 vs. Swiss-Prot
Match: RFC3_ORYSJ (Replication factor C subunit 3 OS=Oryza sativa subsp. japonica GN=RFC3 PE=2 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 7.1e-128
Identity = 234/308 (75.97%), Postives = 265/308 (86.04%), Query Frame = 1 

Query: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60
           M+ A A   +D D        + +GK  A  +  P G+A PWVEK+RP+SL DVAAHRDI
Sbjct: 1   MAGATAATPMDIDAAAPPPGAAAKGK--APLSSTPGGRAAPWVEKYRPQSLGDVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTID+LT+ENRLPHLLLYGPPGTGKTSTILAVARKLYG+ Y NMILELNASD+RGIDVV
Sbjct: 61  VDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYGNMILELNASDERGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFAS +S SFGAK SVK+VLLDEADAMTKDAQFALRRVIEK+T++TRFALICNHV
Sbjct: 121 RQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240
           NKIIPALQSRCTRFRFAPLD  HV ERL+++I++E LDV +GGL ALVRL  GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300
           ILQSTHMAS+ ITEEAVYLCTGNP+PKDIEQI++WLLNE FS SFK I ++K RKGLALV
Sbjct: 241 ILQSTHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNESFSTSFKCISDMKMRKGLALV 300

Query: 301 DIVREVTL 309
           DI+REVT+
Sbjct: 301 DIIREVTM 306

[Close]
BLAST of Cp4.1LG13g04660 vs. Swiss-Prot
Match: RFC5_ARATH (Replication factor C subunit 5 OS=Arabidopsis thaliana GN=RFC5 PE=1 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 7.9e-127
Identity = 240/317 (75.71%), Postives = 269/317 (84.86%), Query Frame = 1 

Query: 1   MSEAIAVMDIDDDNGNNEDEKSV-EGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRD 60
           M+E  + MDID D    +  K + +GK+V      P  KA PWVEK+RP+SL DVAAHRD
Sbjct: 1   MTELTSAMDIDVDE--IQPRKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAAHRD 60

Query: 61  IVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDV 120
           I+DTID+LT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG  Y NMILELNASDDRGIDV
Sbjct: 61  IIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDV 120

Query: 121 VRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 180
           VRQQIQDFASTQSFS G K+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALI NH
Sbjct: 121 VRQQIQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNH 180

Query: 181 VNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKAL 240
           VNKIIPALQSRCTRFRFAPLD VH+++RL++VIEAERL V++ GLAALVRL  GDMRKAL
Sbjct: 181 VNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKAL 240

Query: 241 NILQSTHMASQHITEEA--------VYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEI 300
           NILQSTHMAS+ ITEE         VYLCTGNPLPKDIEQIS WLLN+PF + +K + EI
Sbjct: 241 NILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEI 300

Query: 301 KTRKGLALVDIVREVTL 309
           KTRKGLA+VDIV+E+TL
Sbjct: 301 KTRKGLAIVDIVKEITL 314

[Close]
BLAST of Cp4.1LG13g04660 vs. Swiss-Prot
Match: RFC5_MOUSE (Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=1 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.0e-89
Identity = 169/276 (61.23%), Postives = 214/276 (77.54%), Query Frame = 1 

Query: 34  APDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAV 93
           A   + +PWVEK+RP++LAD+ +H+DI+ TI K  SE+RLPHLLLYGPPGTGKTSTILA 
Sbjct: 13  AARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILAC 72

Query: 94  ARKLY-GTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAM 153
           A++LY    + +M+LELNASDDRGID+VR  I  FAST++     K   KLV+LDEADAM
Sbjct: 73  AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF---KKGFKLVILDEADAM 132

Query: 154 TKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVI 213
           T+DAQ ALRRVIEK+T+NTRF LICN+++KIIPALQSRCTRFRF PL    +  RL +V+
Sbjct: 133 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVV 192

Query: 214 EAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQI 273
           + E +D++E G+ ALV L +GDMR+ALNILQST+MA   +TEE VY CTG+PL  DI  I
Sbjct: 193 QEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANI 252

Query: 274 SFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTL 309
             W+LN+ F+ ++K I E+KT KGLAL DI+ EV L
Sbjct: 253 LDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHL 285

[Close]
BLAST of Cp4.1LG13g04660 vs. Swiss-Prot
Match: RFC5_HUMAN (Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 8.5e-89
Identity = 164/270 (60.74%), Postives = 212/270 (78.52%), Query Frame = 1 

Query: 40  IPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLY- 99
           +PWVEK+RP++L D+ +H+DI+ TI K  +E+RLPHLLLYGPPGTGKTSTILA A++LY 
Sbjct: 20  LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK 79

Query: 100 GTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQF 159
              + +M+LELNASDDRGID++R  I  FAST++     K   KLV+LDEADAMT+DAQ 
Sbjct: 80  DKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIF---KKGFKLVILDEADAMTQDAQN 139

Query: 160 ALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLD 219
           ALRRVIEK+T+NTRF LICN+++KIIPALQSRCTRFRF PL    +  RL +V+E E++D
Sbjct: 140 ALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVD 199

Query: 220 VTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLN 279
           ++E G+ ALV L +GDMR+ALNILQST+MA   +TEE VY CTG+PL  DI  I  W+LN
Sbjct: 200 ISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLN 259

Query: 280 EPFSDSFKRIYEIKTRKGLALVDIVREVTL 309
           + F+ +++ I E+KT KGLAL DI+ E+ L
Sbjct: 260 QDFTTAYRNITELKTLKGLALHDILTEIHL 286

[Close]
BLAST of Cp4.1LG13g04660 vs. Swiss-Prot
Match: RFC5_DICDI (Probable replication factor C subunit 5 OS=Dictyostelium discoideum GN=rfc5 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 8.8e-86
Identity = 167/298 (56.04%), Postives = 210/298 (70.47%), Query Frame = 1 

Query: 8   MDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKL 67
           M+ID  +  N+ +  +E K           +++PWVEK+RPK+L D+ AH DI  TI KL
Sbjct: 1   MEIDMADKTNKFKTDIERKQF---------ESLPWVEKYRPKNLDDLIAHEDITQTITKL 60

Query: 68  TSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDF 127
              N LPHLL YGPPGTGKTSTI A+ARKLYG NY  M+LELNASDDRGIDVVR+QI+ F
Sbjct: 61  IDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGDNYSRMVLELNASDDRGIDVVREQIKTF 120

Query: 128 ASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPAL 187
           AS+  F F      KL++LDEAD+MT  AQ ALRRVIEKYTK TRF ++CN+V KIIPAL
Sbjct: 121 ASSM-FFFNTTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPAL 180

Query: 188 QSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHM 247
           QSRCTRFRF+PL       RL+ +IE E + V    + A++ L  GDMRK LNILQS  M
Sbjct: 181 QSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSM 240

Query: 248 AS--QHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIV 304
           +S   +ITEEA+Y CTG P+P DIE +  WLLN  + ++F+ I ++K +KGL+L DI+
Sbjct: 241 SSIDNNITEEAIYKCTGYPMPSDIELMVDWLLNSDYEEAFQNISDLKKKKGLSLNDII 288

[Close]
BLAST of Cp4.1LG13g04660 vs. TrEMBL
Match: A0A0A0KDS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G382960 PE=4 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 1.5e-164
Identity = 297/308 (96.43%), Postives = 303/308 (98.38%), Query Frame = 1 

Query: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60
           MSE I+VMDIDDDNGNNE EK+V+GKNVA+PA AP+GKAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDN HVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNP+PKDIEQISFWLLNEPFSDSFKRI EIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTL 309
           DIVREVTL
Sbjct: 301 DIVREVTL 308

[Close]
BLAST of Cp4.1LG13g04660 vs. TrEMBL
Match: V4TCU6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001597mg PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 1.0e-141
Identity = 262/307 (85.34%), Postives = 277/307 (90.23%), Query Frame = 1 

Query: 2   SEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDIV 61
           +E +++MD D+D   N   K   GKNV      PD KA PWVEK+RP+SLADVAAHRDIV
Sbjct: 4   AETVSLMDFDEDENQNLKPKD-NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIV 63

Query: 62  DTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVR 121
           DTID+LTSENRLPHLLLYGPPGTGKTSTILAVARKLYG  YHNMILELNASDDRGIDVVR
Sbjct: 64  DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 123

Query: 122 QQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 181
           QQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN VN
Sbjct: 124 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 183

Query: 182 KIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNI 241
           KIIPALQSRCTRFRFAPL+ VHVTERL++VIEAE LDVTEGGLAALVRLC GDMRKALNI
Sbjct: 184 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 243

Query: 242 LQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVD 301
           LQSTHMASQ ITEEAVYLCTGNPLPKDIEQIS+WLLNE F+DSFKRI E+K RKGLALVD
Sbjct: 244 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 303

Query: 302 IVREVTL 309
           IVREVT+
Sbjct: 304 IVREVTM 309

[Close]
BLAST of Cp4.1LG13g04660 vs. TrEMBL
Match: V4T2V7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001597mg PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 1.0e-141
Identity = 262/307 (85.34%), Postives = 277/307 (90.23%), Query Frame = 1 

Query: 2   SEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDIV 61
           +E +++MD D+D   N   K   GKNV      PD KA PWVEK+RP+SLADVAAHRDIV
Sbjct: 4   AETVSLMDFDEDENQNLKPKD-NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIV 63

Query: 62  DTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVR 121
           DTID+LTSENRLPHLLLYGPPGTGKTSTILAVARKLYG  YHNMILELNASDDRGIDVVR
Sbjct: 64  DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 123

Query: 122 QQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 181
           QQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN VN
Sbjct: 124 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 183

Query: 182 KIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNI 241
           KIIPALQSRCTRFRFAPL+ VHVTERL++VIEAE LDVTEGGLAALVRLC GDMRKALNI
Sbjct: 184 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 243

Query: 242 LQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVD 301
           LQSTHMASQ ITEEAVYLCTGNPLPKDIEQIS+WLLNE F+DSFKRI E+K RKGLALVD
Sbjct: 244 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 303

Query: 302 IVREVTL 309
           IVREVT+
Sbjct: 304 IVREVTM 309

[Close]
BLAST of Cp4.1LG13g04660 vs. TrEMBL
Match: B9GU16_POPTR (Replication factor C 36 kDa family protein OS=Populus trichocarpa GN=POPTR_0002s08170g PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 4.8e-139
Identity = 255/308 (82.79%), Postives = 276/308 (89.61%), Query Frame = 1 

Query: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60
           M+EAIA+MDID++   N   K  +GK V  PA  P GKA PWVEK+RP+SLADVAAHRDI
Sbjct: 1   MAEAIALMDIDEEENQNHLSKPNKGKKVVVPATPPGGKATPWVEKYRPQSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           +DTID+LTSENRLPHLLLYGPPGTGKTSTILAVARKLYG  YHNMILELNASDDRGIDVV
Sbjct: 61  IDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           R+QIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240
           NKIIPALQSRCTRFRFAPLD +HV ERL++VIEAE LDV E GL AL  L  GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300
           ILQSTHMASQ ITEE VYLCTGNPLP+D++QI+ WLLNE F++S+KRI EIKTRKGLALV
Sbjct: 241 ILQSTHMASQQITEETVYLCTGNPLPQDVQQITHWLLNESFAESYKRISEIKTRKGLALV 300

Query: 301 DIVREVTL 309
           DIVREVT+
Sbjct: 301 DIVREVTM 308

[Close]
BLAST of Cp4.1LG13g04660 vs. TrEMBL
Match: E0CR43_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g02370 PE=4 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 1.1e-138
Identity = 258/308 (83.77%), Postives = 281/308 (91.23%), Query Frame = 1 

Query: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60
           M+EA+ VMDID+++  N   K+ +GK+V      PD KA PWVEK+RP+SLADVAAHRDI
Sbjct: 1   MAEAVTVMDIDEED--NHLLKANKGKSVV-VGGPPDRKATPWVEKYRPQSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTID+LTSENRLPHLLLYGPPGTGKTSTILAVARKLYG  +HNMILELNASDDRGIDVV
Sbjct: 61  VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAK+SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240
           NKIIPALQSRCTRFRFAPLD VHVTERL++VI AE+LDV+E GLAALVRL +GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300
           ILQSTHMASQ ITEEAVYLCTGNPLPKDIEQIS+WLLNE F+ SF RI E+K RKGLALV
Sbjct: 241 ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALV 300

Query: 301 DIVREVTL 309
           D+VREVT+
Sbjct: 301 DVVREVTM 305

[Close]
BLAST of Cp4.1LG13g04660 vs. TAIR10
Match: AT1G77470.1 (AT1G77470.1 replication factor C subunit 3)

HSP 1 Score: 455.3 bits (1170), Expect = 4.4e-128
Identity = 240/317 (75.71%), Postives = 269/317 (84.86%), Query Frame = 1 

Query: 1   MSEAIAVMDIDDDNGNNEDEKSV-EGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRD 60
           M+E  + MDID D    +  K + +GK+V      P  KA PWVEK+RP+SL DVAAHRD
Sbjct: 1   MTELTSAMDIDVDE--IQPRKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAAHRD 60

Query: 61  IVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDV 120
           I+DTID+LT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG  Y NMILELNASDDRGIDV
Sbjct: 61  IIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDV 120

Query: 121 VRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 180
           VRQQIQDFASTQSFS G K+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALI NH
Sbjct: 121 VRQQIQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNH 180

Query: 181 VNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKAL 240
           VNKIIPALQSRCTRFRFAPLD VH+++RL++VIEAERL V++ GLAALVRL  GDMRKAL
Sbjct: 181 VNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKAL 240

Query: 241 NILQSTHMASQHITEEA--------VYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEI 300
           NILQSTHMAS+ ITEE         VYLCTGNPLPKDIEQIS WLLN+PF + +K + EI
Sbjct: 241 NILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEI 300

Query: 301 KTRKGLALVDIVREVTL 309
           KTRKGLA+VDIV+E+TL
Sbjct: 301 KTRKGLAIVDIVKEITL 314

[Close]
BLAST of Cp4.1LG13g04660 vs. TAIR10
Match: AT1G63160.1 (AT1G63160.1 replication factor C 2)

HSP 1 Score: 209.5 bits (532), Expect = 4.2e-54
Identity = 117/271 (43.17%), Postives = 162/271 (59.78%), Query Frame = 1 

Query: 36  DGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVAR 95
           DG   PWVEK+RP  + D+  + D V  +  +  +  +P+L+L GPPGTGKT++ILA+A 
Sbjct: 11  DGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAH 70

Query: 96  KLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKD 155
           +L GTNY   +LELNASDDRGIDVVR +I+ FA  Q          K+V+LDEAD+MT  
Sbjct: 71  ELLGTNYKEAVLELNASDDRGIDVVRNKIKMFA--QKKVTLPPGRHKVVILDEADSMTSG 130

Query: 156 AQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAE 215
           AQ ALRR IE Y+ +TRFAL CN   KII  +QSRC   RF+ L +  +  RL  V+ AE
Sbjct: 131 AQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAE 190

Query: 216 RLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFW 275
           ++     GL A++    GDMR+ALN LQ+T      + +E V+     P P  ++ I   
Sbjct: 191 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRN 250

Query: 276 LLNEPFS---DSFKRIYEIKTRKGLALVDIV 304
           +L   F    D  K++Y++    G +  DI+
Sbjct: 251 VLESKFDIACDGLKQLYDL----GYSPTDII 275

[Close]
BLAST of Cp4.1LG13g04660 vs. TAIR10
Match: AT1G21690.3 (AT1G21690.3 ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 192.6 bits (488), Expect = 5.4e-49
Identity = 98/210 (46.67%), Postives = 139/210 (66.19%), Query Frame = 1 

Query: 41  PWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGT 100
           PWVEK+RPK + DVA   ++V  +         PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 101 N-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKA-----SVKLVLLDEADAMTK 160
             Y + +LELNASDDRGI+VVR +I+DFA+    S   ++     S K+++LDEAD+MT+
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 161 DAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEA 220
           DAQ ALRR +E Y+K TRF  ICN++++II  L SRC +FRF PL    ++ R+ ++   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 221 ERLDVTEGGLAALVRLCTGDMRKALNILQS 245
           E L +    L+ L  +  GD+R+A+  LQS
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQS 219

[Close]
BLAST of Cp4.1LG13g04660 vs. TAIR10
Match: AT5G27740.1 (AT5G27740.1 ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 110.2 bits (274), Expect = 3.5e-24
Identity = 79/300 (26.33%), Postives = 138/300 (46.00%), Query Frame = 1 

Query: 42  WVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTN 101
           WV+K+RPKSL  V  H DI   + KL SE   PHLL YGP G+GK + I+A+ +++YG +
Sbjct: 3   WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62

Query: 102 YHNMILELNA-SDDRGIDVVRQQIQDFAST-------QSFSFGAKASVKLVLLDEADAMT 161
              + +E  A   D G   +  ++   +ST           F  +  V+ ++ + A    
Sbjct: 63  AEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122

Query: 162 KD---------------------AQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCT 221
            D                     AQ +LRR +EKY+ + R  L CN  +K+  A++SRC 
Sbjct: 123 IDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCL 182

Query: 222 RFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHI 281
             R        + + L +V + E L + +G  A +       +R+A+  L++  + +   
Sbjct: 183 NVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQN--- 242

Query: 282 TEEAVYLCTGNPL--PKDIEQISFWLLNEPFSD-SFKRIYEIKTRKGLALVDIVREVTLL 310
                Y  TGN +  P D E+    +  +   + S K++++++ +    LV+ +    +L
Sbjct: 243 -----YPFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVIL 294

[Close]
BLAST of Cp4.1LG13g04660 vs. TAIR10
Match: AT1G24290.1 (AT1G24290.1 AAA-type ATPase family protein)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-11
Identity = 67/227 (29.52%), Postives = 102/227 (44.93%), Query Frame = 1 

Query: 41  PWVEKFRPKSLADVAAHRDIVDTIDKLTS---ENRLPHLLLYGPPGTGKTSTILAVARKL 100
           P  E+ RP++L DV     ++     L S    NRLP ++ +GPPGTGKTS   ++    
Sbjct: 102 PLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSS 161

Query: 101 YGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQ 160
              + +  +  L+A    G+  VR  ++  ++ +    G K +V  + +DE     K  Q
Sbjct: 162 KDPSLYRFV-SLSAVTS-GVKDVRDAVE--SAKRLNLEGRKRTV--LFMDEVHRFNKSQQ 221

Query: 161 FALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVI-EAER 220
                VIE  +     A   N    +I  L SRC      PL   HV   LR  + ++ER
Sbjct: 222 DTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSER 281

Query: 221 -----LDVTEGGLAALVRLCTGDMRKALNILQ-STHMASQHITEEAV 258
                ++V +  +  L   C GD R ALN L+ S  MA+     +AV
Sbjct: 282 GLPNSVEVDDSVIEFLANNCDGDARVALNALEISATMATTRAGTDAV 322

[Close]
BLAST of Cp4.1LG13g04660 vs. NCBI nr
Match: gi|449464168|ref|XP_004149801.1| (PREDICTED: replication factor C subunit 3 [Cucumis sativus])

HSP 1 Score: 587.4 bits (1513), Expect = 2.1e-164
Identity = 297/308 (96.43%), Postives = 303/308 (98.38%), Query Frame = 1 

Query: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60
           MSE I+VMDIDDDNGNNE EK+V+GKNVA+PA AP+GKAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDN HVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNP+PKDIEQISFWLLNEPFSDSFKRI EIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTL 309
           DIVREVTL
Sbjct: 301 DIVREVTL 308

[Close]
BLAST of Cp4.1LG13g04660 vs. NCBI nr
Match: gi|659133449|ref|XP_008466735.1| (PREDICTED: replication factor C subunit 5 [Cucumis melo])

HSP 1 Score: 578.6 bits (1490), Expect = 9.9e-162
Identity = 293/308 (95.13%), Postives = 300/308 (97.40%), Query Frame = 1 

Query: 1   MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDI 60
           MSE I+VMDIDDDNGNNE EK+V+GKNVA+PA AP+ KAIPWVEKFRPKSLADVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEVKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
           RQQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
Sbjct: 121 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDN HVTERLRYVIEAERLDVTE GLAALVRLC+GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALN 240

Query: 241 ILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALV 300
           ILQSTHMASQHITEEAVYLCTGNP+PKDIEQISFWLLNEPFSDSFKRI EIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTL 309
           DIVREVTL
Sbjct: 301 DIVREVTL 308

[Close]
BLAST of Cp4.1LG13g04660 vs. NCBI nr
Match: gi|568837596|ref|XP_006472809.1| (PREDICTED: replication factor C subunit 3 [Citrus sinensis])

HSP 1 Score: 513.1 bits (1320), Expect = 5.1e-142
Identity = 263/307 (85.67%), Postives = 278/307 (90.55%), Query Frame = 1 

Query: 2   SEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDIV 61
           +E +++MDID+D   N   K   GKNV      PD KA PWVEK+RP+SLADVAAHRDIV
Sbjct: 4   AETVSLMDIDEDENKNLKPKD-NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIV 63

Query: 62  DTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVR 121
           DTID+LTSENRLPHLLLYGPPGTGKTSTILAVARKLYG  YHNMILELNASDDRGIDVVR
Sbjct: 64  DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 123

Query: 122 QQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 181
           QQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN VN
Sbjct: 124 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 183

Query: 182 KIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNI 241
           KIIPALQSRCTRFRFAPL+ VHVTERL++VIEAE LDVTEGGLAALVRLC GDMRKALNI
Sbjct: 184 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 243

Query: 242 LQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVD 301
           LQSTHMASQ ITEEAVYLCTGNPLPKDIEQIS+WLLNE F+DSFKRI E+K RKGLALVD
Sbjct: 244 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 303

Query: 302 IVREVTL 309
           IVREVT+
Sbjct: 304 IVREVTM 309

[Close]
BLAST of Cp4.1LG13g04660 vs. NCBI nr
Match: gi|567883357|ref|XP_006434237.1| (hypothetical protein CICLE_v10001597mg [Citrus clementina])

HSP 1 Score: 511.5 bits (1316), Expect = 1.5e-141
Identity = 262/307 (85.34%), Postives = 277/307 (90.23%), Query Frame = 1 

Query: 2   SEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDIV 61
           +E +++MD D+D   N   K   GKNV      PD KA PWVEK+RP+SLADVAAHRDIV
Sbjct: 4   AETVSLMDFDEDENQNLKPKD-NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIV 63

Query: 62  DTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVR 121
           DTID+LTSENRLPHLLLYGPPGTGKTSTILAVARKLYG  YHNMILELNASDDRGIDVVR
Sbjct: 64  DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 123

Query: 122 QQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 181
           QQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN VN
Sbjct: 124 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 183

Query: 182 KIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNI 241
           KIIPALQSRCTRFRFAPL+ VHVTERL++VIEAE LDVTEGGLAALVRLC GDMRKALNI
Sbjct: 184 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 243

Query: 242 LQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVD 301
           LQSTHMASQ ITEEAVYLCTGNPLPKDIEQIS+WLLNE F+DSFKRI E+K RKGLALVD
Sbjct: 244 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 303

Query: 302 IVREVTL 309
           IVREVT+
Sbjct: 304 IVREVTM 309

[Close]
BLAST of Cp4.1LG13g04660 vs. NCBI nr
Match: gi|567883355|ref|XP_006434236.1| (hypothetical protein CICLE_v10001597mg [Citrus clementina])

HSP 1 Score: 511.5 bits (1316), Expect = 1.5e-141
Identity = 262/307 (85.34%), Postives = 277/307 (90.23%), Query Frame = 1 

Query: 2   SEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDIV 61
           +E +++MD D+D   N   K   GKNV      PD KA PWVEK+RP+SLADVAAHRDIV
Sbjct: 4   AETVSLMDFDEDENQNLKPKD-NGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIV 63

Query: 62  DTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVR 121
           DTID+LTSENRLPHLLLYGPPGTGKTSTILAVARKLYG  YHNMILELNASDDRGIDVVR
Sbjct: 64  DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 123

Query: 122 QQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 181
           QQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN VN
Sbjct: 124 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 183

Query: 182 KIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNI 241
           KIIPALQSRCTRFRFAPL+ VHVTERL++VIEAE LDVTEGGLAALVRLC GDMRKALNI
Sbjct: 184 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 243

Query: 242 LQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVD 301
           LQSTHMASQ ITEEAVYLCTGNPLPKDIEQIS+WLLNE F+DSFKRI E+K RKGLALVD
Sbjct: 244 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVD 303

Query: 302 IVREVTL 309
           IVREVT+
Sbjct: 304 IVREVTM 309

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g04660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RFC3_ORYSJ7.1e-12875.97Replication factor C subunit 3 OS=Oryza sativa subsp. japonica GN=RFC3 PE=2 SV=1[more]
RFC5_ARATH7.9e-12775.71Replication factor C subunit 5 OS=Arabidopsis thaliana GN=RFC5 PE=1 SV=1[more]
RFC5_MOUSE1.0e-8961.23Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=1 SV=1[more]
RFC5_HUMAN8.5e-8960.74Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1[more]
RFC5_DICDI8.8e-8656.04Probable replication factor C subunit 5 OS=Dictyostelium discoideum GN=rfc5 PE=3... [more]
BLAST of Cp4.1LG13g04660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDS9_CUCSA1.5e-16496.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G382960 PE=4 SV=1[more]
V4TCU6_9ROSI1.0e-14185.34Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001597mg PE=4 SV=1[more]
V4T2V7_9ROSI1.0e-14185.34Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001597mg PE=4 SV=1[more]
B9GU16_POPTR4.8e-13982.79Replication factor C 36 kDa family protein OS=Populus trichocarpa GN=POPTR_0002s... [more]
E0CR43_VITVI1.1e-13883.77Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g02370 PE=4 SV=... [more]
BLAST of Cp4.1LG13g04660 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77470.14.4e-12875.71 replication factor C subunit 3[more]
AT1G63160.14.2e-5443.17 replication factor C 2[more]
AT1G21690.35.4e-4946.67 ATPase family associated with various cellular activities (AAA) [more]
AT5G27740.13.5e-2426.33 ATPase family associated with various cellular activities (AAA) [more]
AT1G24290.11.5e-1129.52 AAA-type ATPase family protein[more]
BLAST of Cp4.1LG13g04660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464168|ref|XP_004149801.1|2.1e-16496.43PREDICTED: replication factor C subunit 3 [Cucumis sativus][more]
gi|659133449|ref|XP_008466735.1|9.9e-16295.13PREDICTED: replication factor C subunit 5 [Cucumis melo][more]
gi|568837596|ref|XP_006472809.1|5.1e-14285.67PREDICTED: replication factor C subunit 3 [Citrus sinensis][more]
gi|567883357|ref|XP_006434237.1|1.5e-14185.34hypothetical protein CICLE_v10001597mg [Citrus clementina][more]
gi|567883355|ref|XP_006434236.1|1.5e-14185.34hypothetical protein CICLE_v10001597mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR013748Rep_factorC_C
IPR008921DNA_pol3_clamp-load_cplx_C
IPR003959ATPase_AAA_core
IPR003593AAA+_ATPase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006342 chromatin silencing
biological_process GO:0006260 DNA replication
biological_process GO:0016246 RNA interference
biological_process GO:0009909 regulation of flower development
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006312 mitotic recombination
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0048449 floral organ formation
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0016570 histone modification
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0009908 flower development
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0042575 DNA polymerase complex
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g04660.1Cp4.1LG13g04660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 72..203
score: 3.0
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 76..196
score: 4.5
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalunknownSSF48019post-AAA+ oligomerization domain-likecoord: 356..446
score: 3.27E-22coord: 264..308
score: 6.8
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 356..442
score: 1.9E-19coord: 264..306
score: 4.
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 41..199
score: 4.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 40..258
score: 3.54
NoneNo IPR availableGENE3DG3DSA:1.10.8.60coord: 204..266
score: 2.3E-22coord: 309..358
score: 2.5
NoneNo IPR availableGENE3DG3DSA:1.20.272.10coord: 359..451
score: 8.2E-38coord: 267..308
score: 4.0
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 24..252
score: 3.7E-180coord: 341..447
score: 3.7E
NoneNo IPR availablePANTHERPTHR11669:SF9REPLICATION FACTOR C SUBUNIT 5coord: 341..447
score: 3.7E-180coord: 24..252
score: 3.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g04660Cucsa.060610Cucumber (Gy14) v1cgycpeB0079
Cp4.1LG13g04660CmaCh15G006660Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g04660CmaCh04G023740Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g04660CmoCh04G024870Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g04660CmoCh15G006750Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g04660Cla013923Watermelon (97103) v1cpewmB170
Cp4.1LG13g04660Csa6G382960Cucumber (Chinese Long) v2cpecuB199
Cp4.1LG13g04660MELO3C010631Melon (DHL92) v3.5.1cpemeB168
Cp4.1LG13g04660ClCG08G005860Watermelon (Charleston Gray)cpewcgB180
Cp4.1LG13g04660CSPI06G20220Wild cucumber (PI 183967)cpecpiB200
Cp4.1LG13g04660Lsi08G004470Bottle gourd (USVL1VR-Ls)cpelsiB158
Cp4.1LG13g04660MELO3C010631.2Melon (DHL92) v3.6.1cpemedB200
Cp4.1LG13g04660CsaV3_6G034260Cucumber (Chinese Long) v3cpecucB0239
Cp4.1LG13g04660Bhi04G001501Wax gourdcpewgoB0252
Cp4.1LG13g04660CsGy6G019700Cucumber (Gy14) v2cgybcpeB742
Cp4.1LG13g04660Carg00318Silver-seed gourdcarcpeB0936
Cp4.1LG13g04660Carg01542Silver-seed gourdcarcpeB1157
Cp4.1LG13g04660Carg24427Silver-seed gourdcarcpeB0626
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g04660Cp4.1LG01g20570Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g04660Cucumber (Chinese Long) v3cpecucB0206
Cp4.1LG13g04660Wax gourdcpewgoB0264
Cp4.1LG13g04660Cucurbita pepo (Zucchini)cpecpeB215
Cp4.1LG13g04660Cucurbita pepo (Zucchini)cpecpeB229
Cp4.1LG13g04660Cucurbita maxima (Rimu)cmacpeB034
Cp4.1LG13g04660Cucurbita maxima (Rimu)cmacpeB468
Cp4.1LG13g04660Cucurbita moschata (Rifu)cmocpeB010
Cp4.1LG13g04660Cucurbita moschata (Rifu)cmocpeB427
Cp4.1LG13g04660Wild cucumber (PI 183967)cpecpiB174
Cp4.1LG13g04660Cucumber (Chinese Long) v2cpecuB173
Cp4.1LG13g04660Bottle gourd (USVL1VR-Ls)cpelsiB147
Cp4.1LG13g04660Watermelon (Charleston Gray)cpewcgB161
Cp4.1LG13g04660Watermelon (97103) v1cpewmB193
Cp4.1LG13g04660Melon (DHL92) v3.5.1cpemeB178
Cp4.1LG13g04660Cucumber (Gy14) v2cgybcpeB482
Cp4.1LG13g04660Melon (DHL92) v3.6.1cpemedB213