Cp4.1LG13g02890 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g02890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG13 : 2360636 .. 2361121 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGGAACTTTGAGGCGTTGAATGCCGCTGCTAATGTTGAAGAAGCAAGGGTTGGTGAGTTGGAGAGCAAACTCCACCACATAGCTTTGGGGTACCTCATCTGGGAGAGGAGCTTTTTCTTTGCTCTCTCTCGCAATTCTTCCTCCCACAAGTGTGTTCCTTTGTGGATGGTCGTGGGGTTGAGTCTTTCTTGTTCCGCTCTCTACCTTTTGATGTTGTTGCAGAATGTGAGTATGATGTTCCGCTCTCTTAACACGCTCAACATGATTTTGAGGGAACGCGCTCTTATCTTGGAGGCCAGAAATGAAGAAGGTTATGGTGGGTTGGAGGTGAATTACGGTTTCCAGGTGAGGGAACTCAACAATGGGAGGTTCAGAGTTGCGGAGAGGAAAGTATACATATGCGCCATTGCGTGTGCTTTGGTTGCTGTGACTGCTTTCGAAGTGTGCGCATGTACTTACTCGGTGTCGCTATGTGAATGA

mRNA sequence

ATGGACAGGAACTTTGAGGCGTTGAATGCCGCTGCTAATGTTGAAGAAGCAAGGGTTGGTGAGTTGGAGAGCAAACTCCACCACATAGCTTTGGGGTACCTCATCTGGGAGAGGAGCTTTTTCTTTGCTCTCTCTCGCAATTCTTCCTCCCACAAGTGTGTTCCTTTGTGGATGGTCGTGGGGTTGAGTCTTTCTTGTTCCGCTCTCTACCTTTTGATGTTGTTGCAGAATGTGAGTATGATGTTCCGCTCTCTTAACACGCTCAACATGATTTTGAGGGAACGCGCTCTTATCTTGGAGGCCAGAAATGAAGAAGGTTATGGTGGGTTGGAGGTGAATTACGGTTTCCAGGTGAGGGAACTCAACAATGGGAGGTTCAGAGTTGCGGAGAGGAAAGTATACATATGCGCCATTGCGTGTGCTTTGGTTGCTGTGACTGCTTTCGAAGTGTGCGCATGTACTTACTCGGTGTCGCTATGTGAATGA

Coding sequence (CDS)

ATGGACAGGAACTTTGAGGCGTTGAATGCCGCTGCTAATGTTGAAGAAGCAAGGGTTGGTGAGTTGGAGAGCAAACTCCACCACATAGCTTTGGGGTACCTCATCTGGGAGAGGAGCTTTTTCTTTGCTCTCTCTCGCAATTCTTCCTCCCACAAGTGTGTTCCTTTGTGGATGGTCGTGGGGTTGAGTCTTTCTTGTTCCGCTCTCTACCTTTTGATGTTGTTGCAGAATGTGAGTATGATGTTCCGCTCTCTTAACACGCTCAACATGATTTTGAGGGAACGCGCTCTTATCTTGGAGGCCAGAAATGAAGAAGGTTATGGTGGGTTGGAGGTGAATTACGGTTTCCAGGTGAGGGAACTCAACAATGGGAGGTTCAGAGTTGCGGAGAGGAAAGTATACATATGCGCCATTGCGTGTGCTTTGGTTGCTGTGACTGCTTTCGAAGTGTGCGCATGTACTTACTCGGTGTCGCTATGTGAATGA

Protein sequence

MDRNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSRNSSSHKCVPLWMVVGLSLSCSALYLLMLLQNVSMMFRSLNTLNMILRERALILEARNEEGYGGLEVNYGFQVRELNNGRFRVAERKVYICAIACALVAVTAFEVCACTYSVSLCE

Homology

[Close]

BLAST of Cp4.1LG13g02890 vs. TrEMBL
Match: E5GBE1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.2e-13
Identity = 62/171 (36.26%), Postives = 94/171 (54.97%), Query Frame = 1


Query: 1   MDRNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSRNSSSHK---CVP-L 60
           + RNF+ L   A  +E RV   E++  ++A+  LIW+R F   +   SSS     C P L
Sbjct: 8   LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPHL 67

Query: 61  WMVVGLSLSCSALYLLMLLQNVSMMFRSLNTLNMILRERALI-LEARN------------ 120
           WMV+G SL+ ++LYLL  L+ V M++R+ N L++I +++  I L+  N            
Sbjct: 68  WMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEAGDT 127

Query: 121 -EEGYGGLEVNYGFQVRELNNGRFRVAERKVYICAIACALVAVTAFEVCAC 154
                GGLE++  FQV+ L      V +RK+YI +    L+AV+AFEV  C
Sbjct: 128 FSSDNGGLELS--FQVQLLQYHPLTVVQRKIYIASTISTLLAVSAFEVYTC 176

[Close]

BLAST of Cp4.1LG13g02890 vs. TrEMBL
Match: A0A0A0KM15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139820 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-09
Identity = 54/169 (31.95%), Postives = 86/169 (50.89%), Query Frame = 1


Query: 1   MDRNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSRNSSSHKCVP----L 60
           + R F+ L   A  +E RV   E++  ++A+  LIW+R FF  +   SSS   +     L
Sbjct: 8   LKRKFDGLKFLAEKQEQRVRYYETRAQNLAIASLIWDRLFFVGMYHTSSSLSLLNCTHHL 67

Query: 61  WMVVGLSLSCSALYLLMLLQNVSMMFRSLNTLNMILRERALIL-------EARNEEGYGG 120
           WMV    LS ++LY L  L+ V M++R+ N L++I +++  I           ++E    
Sbjct: 68  WMVFSFILSSTSLYFLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEAGDS 127

Query: 121 LEVNYG-----FQVRELNNGRFRVAERKVYICAIACALVAVTAFEVCAC 154
           +  + G     FQV+ L    F + +RKVYI +    L+AV AFE+  C
Sbjct: 128 ISSDNGWLELSFQVQLLPYHPFTLVQRKVYIASTIFTLLAVAAFELYTC 176

[Close]

BLAST of Cp4.1LG13g02890 vs. TrEMBL
Match: A0A0A0KJZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139810 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 60/165 (36.36%), Postives = 86/165 (52.12%), Query Frame = 1


Query: 3   RNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSRNSSSHKCVPLWMVVGL 62
           +NF  L    + +E  +   E+KL +I LGYL W R FFF  S    S KC   W+V+ L
Sbjct: 86  KNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGFS---FSFKCKDWWVVLSL 145

Query: 63  SLSCSALYLLMLLQNVSMMFRSLNTLNMILRERA----LILEARNEE----GYGGLEVNY 122
           +L  + LYLL+ +  V M+ R+ + L +I +E       IL A+N++       G E   
Sbjct: 146 TLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQDTVDLSMEGGECCD 205

Query: 123 GFQV----RELNNGRFRVAE--RKVYICAIACALVAVTAFEVCAC 154
           GF++    R     +F V E  RK YI  I CAL+ +TA E+ AC
Sbjct: 206 GFELSFHERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYAC 247

[Close]

BLAST of Cp4.1LG13g02890 vs. TrEMBL
Match: A0A0A0KUT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G562290 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 1


Query: 1   MDRNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSR---NSSSHKCVPLW 60
           M +  E LNA A+ ++ RV   E+ L +IA+ +L+W R FFF+LS+   NSS   C   W
Sbjct: 9   MQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQTSPNSSLLHCKHWW 68

Query: 61  MVVGLSLSCSALYLLMLLQNVSMMFRSLNTLNMILRERALILE----ARNEEGYGGLEVN 120
           ++  L+   + LY+L+ + N  M+ R+   L++I R++  + +     R +E    +E  
Sbjct: 69  LLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWMLRLQELPQMIEPI 128

Query: 121 YGFQVRELNNGRFRVAERKVYICAIACALVAVTAFEVCA 153
               +     GR    ERK+YI  I C  + + A E+ A
Sbjct: 129 IMDHIINGEMGRTSTFERKLYINCILCGFIGIVALELYA 167

[Close]

BLAST of Cp4.1LG13g02890 vs. TrEMBL
Match: A0A0A0KND2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139800 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 49/174 (28.16%), Postives = 84/174 (48.28%), Query Frame = 1


Query: 3   RNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSRNSSSHKCVPLWMVVGL 62
           R+F+ L      +E RV   +SK+ ++ +GYLI+ R   F +++     KC   W+++ L
Sbjct: 7   RSFQELKVIYKEQEERVCHHDSKVQNLVIGYLIFGRLLIFGIAQTFLPFKCKDWWVILAL 66

Query: 63  SLSCSALYLLMLLQNVSMMFRSLNTLNMILRERAL-----ILEARNE------------- 122
           +LSC+ +Y  +LL  V+M+ R+   L+ I+RE  +     ILE +N+             
Sbjct: 67  TLSCTLIYFSLLLDAVTMLRRAQYQLD-IIREELIEICQRILETQNQKELVDLTQLTMEA 126

Query: 123 -EGYGGLEVNYGFQVRELNNGRFRVAERKVYICAIACALVAVTAFEVCACTYSV 158
            E   G + N+GF  + L      +  RKV++      L+ V   E+    Y V
Sbjct: 127 GESNDGFDYNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLV 179

[Close]

BLAST of Cp4.1LG13g02890 vs. NCBI nr
Match: gi|307135919|gb|ADN33782.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 82.8 bits (203), Expect = 6.0e-13
Identity = 62/171 (36.26%), Postives = 94/171 (54.97%), Query Frame = 1


Query: 1   MDRNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSRNSSSHK---CVP-L 60
           + RNF+ L   A  +E RV   E++  ++A+  LIW+R F   +   SSS     C P L
Sbjct: 8   LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPHL 67

Query: 61  WMVVGLSLSCSALYLLMLLQNVSMMFRSLNTLNMILRERALI-LEARN------------ 120
           WMV+G SL+ ++LYLL  L+ V M++R+ N L++I +++  I L+  N            
Sbjct: 68  WMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEAGDT 127

Query: 121 -EEGYGGLEVNYGFQVRELNNGRFRVAERKVYICAIACALVAVTAFEVCAC 154
                GGLE++  FQV+ L      V +RK+YI +    L+AV+AFEV  C
Sbjct: 128 FSSDNGGLELS--FQVQLLQYHPLTVVQRKIYIASTISTLLAVSAFEVYTC 176

[Close]

BLAST of Cp4.1LG13g02890 vs. NCBI nr
Match: gi|659074338|ref|XP_008437550.1| (PREDICTED: uncharacterized protein LOC103482931 isoform X1 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 61/168 (36.31%), Postives = 93/168 (55.36%), Query Frame = 1


Query: 1   MDRNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSRNSSSHK---CVP-L 60
           + RNF+ L   A  +E RV   E++  ++A+  LIW+R F   +   SSS     C P L
Sbjct: 8   LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPHL 67

Query: 61  WMVVGLSLSCSALYLLMLLQNVSMMFRSLNTLNMILRERALI-LEARN------------ 120
           WMV+G SL+ ++LYLL  L+ V M++R+ N L++I +++  I L+  N            
Sbjct: 68  WMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEAGDT 127

Query: 121 -EEGYGGLEVNYGFQVRELNNGRFRVAERKVYICAIACALVAVTAFEV 151
                GGLE++  FQV+ L      V +RK+YI +    L+AV+AFEV
Sbjct: 128 FSSDNGGLELS--FQVQLLQYHPLTVVQRKIYIASTISTLLAVSAFEV 173

[Close]

BLAST of Cp4.1LG13g02890 vs. NCBI nr
Match: gi|700194727|gb|KGN49904.1| (hypothetical protein Csa_5G139820 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 6.9e-09
Identity = 54/169 (31.95%), Postives = 86/169 (50.89%), Query Frame = 1


Query: 1   MDRNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSRNSSSHKCVP----L 60
           + R F+ L   A  +E RV   E++  ++A+  LIW+R FF  +   SSS   +     L
Sbjct: 8   LKRKFDGLKFLAEKQEQRVRYYETRAQNLAIASLIWDRLFFVGMYHTSSSLSLLNCTHHL 67

Query: 61  WMVVGLSLSCSALYLLMLLQNVSMMFRSLNTLNMILRERALIL-------EARNEEGYGG 120
           WMV    LS ++LY L  L+ V M++R+ N L++I +++  I           ++E    
Sbjct: 68  WMVFSFILSSTSLYFLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEAGDS 127

Query: 121 LEVNYG-----FQVRELNNGRFRVAERKVYICAIACALVAVTAFEVCAC 154
           +  + G     FQV+ L    F + +RKVYI +    L+AV AFE+  C
Sbjct: 128 ISSDNGWLELSFQVQLLPYHPFTLVQRKVYIASTIFTLLAVAAFELYTC 176

[Close]

BLAST of Cp4.1LG13g02890 vs. NCBI nr
Match: gi|700194726|gb|KGN49903.1| (hypothetical protein Csa_5G139810 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-08
Identity = 60/165 (36.36%), Postives = 86/165 (52.12%), Query Frame = 1


Query: 3   RNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSRNSSSHKCVPLWMVVGL 62
           +NF  L    + +E  +   E+KL +I LGYL W R FFF  S    S KC   W+V+ L
Sbjct: 86  KNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGFS---FSFKCKDWWVVLSL 145

Query: 63  SLSCSALYLLMLLQNVSMMFRSLNTLNMILRERA----LILEARNEE----GYGGLEVNY 122
           +L  + LYLL+ +  V M+ R+ + L +I +E       IL A+N++       G E   
Sbjct: 146 TLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQDTVDLSMEGGECCD 205

Query: 123 GFQV----RELNNGRFRVAE--RKVYICAIACALVAVTAFEVCAC 154
           GF++    R     +F V E  RK YI  I CAL+ +TA E+ AC
Sbjct: 206 GFELSFHERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYAC 247

[Close]

BLAST of Cp4.1LG13g02890 vs. NCBI nr
Match: gi|700196294|gb|KGN51471.1| (hypothetical protein Csa_5G562290 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-08
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 1


Query: 1   MDRNFEALNAAANVEEARVGELESKLHHIALGYLIWERSFFFALSR---NSSSHKCVPLW 60
           M +  E LNA A+ ++ RV   E+ L +IA+ +L+W R FFF+LS+   NSS   C   W
Sbjct: 9   MQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQTSPNSSLLHCKHWW 68

Query: 61  MVVGLSLSCSALYLLMLLQNVSMMFRSLNTLNMILRERALILE----ARNEEGYGGLEVN 120
           ++  L+   + LY+L+ + N  M+ R+   L++I R++  + +     R +E    +E  
Sbjct: 69  LLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWMLRLQELPQMIEPI 128

Query: 121 YGFQVRELNNGRFRVAERKVYICAIACALVAVTAFEVCA 153
               +     GR    ERK+YI  I C  + + A E+ A
Sbjct: 129 IMDHIINGEMGRTSTFERKLYINCILCGFIGIVALELYA 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g02890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g02890 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBE1_CUCME	4.2e-13	36.26	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KM15_CUCSA	4.8e-09	31.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139820 PE=4 SV=1	[more]
A0A0A0KJZ3_CUCSA	1.4e-08	36.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139810 PE=4 SV=1	[more]
A0A0A0KUT0_CUCSA	1.8e-08	31.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G562290 PE=4 SV=1	[more]
A0A0A0KND2_CUCSA	1.5e-07	28.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139800 PE=4 SV=1	[more]

BLAST of Cp4.1LG13g02890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g02890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135919\|gb\|ADN33782.1\|	6.0e-13	36.26	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659074338\|ref\|XP_008437550.1\|	1.3e-12	36.31	PREDICTED: uncharacterized protein LOC103482931 isoform X1 [Cucumis melo]	[more]
gi\|700194727\|gb\|KGN49904.1\|	6.9e-09	31.95	hypothetical protein Csa_5G139820 [Cucumis sativus]	[more]
gi\|700194726\|gb\|KGN49903.1\|	2.0e-08	36.36	hypothetical protein Csa_5G139810 [Cucumis sativus]	[more]
gi\|700196294\|gb\|KGN51471.1\|	2.6e-08	31.45	hypothetical protein Csa_5G562290 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g02890.1	Cp4.1LG13g02890.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g02890	CmaCh15G010520	Cucurbita maxima (Rimu)	cmacpeB305
Cp4.1LG13g02890	Cla004927	Watermelon (97103) v1	cpewmB187
Cp4.1LG13g02890	Csa5G139800	Cucumber (Chinese Long) v2	cpecuB188
Cp4.1LG13g02890	MELO3C005853	Melon (DHL92) v3.5.1	cpemeB148
Cp4.1LG13g02890	ClCG01G000770	Watermelon (Charleston Gray)	cpewcgB167
Cp4.1LG13g02890	CSPI05G03520	Wild cucumber (PI 183967)	cpecpiB189
Cp4.1LG13g02890	Lsi09G000580	Bottle gourd (USVL1VR-Ls)	cpelsiB134
Cp4.1LG13g02890	CsaV3_5G000890	Cucumber (Chinese Long) v3	cpecucB0226
Cp4.1LG13g02890	Carg26227	Silver-seed gourd	carcpeB0417

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG13g02890	Cp4.1LG05g06380	Cucurbita pepo (Zucchini)	cpecpeB227

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG13g02890	Cucurbita pepo (Zucchini)	cpecpeB021
Cp4.1LG13g02890	Cucurbita pepo (Zucchini)	cpecpeB197
Cp4.1LG13g02890	Cucumber (Gy14) v1	cgycpeB0571
Cp4.1LG13g02890	Cucurbita maxima (Rimu)	cmacpeB343
Cp4.1LG13g02890	Cucurbita maxima (Rimu)	cmacpeB423
Cp4.1LG13g02890	Cucurbita maxima (Rimu)	cmacpeB602
Cp4.1LG13g02890	Cucurbita moschata (Rifu)	cmocpeB268
Cp4.1LG13g02890	Cucurbita moschata (Rifu)	cmocpeB306
Cp4.1LG13g02890	Cucurbita moschata (Rifu)	cmocpeB384
Cp4.1LG13g02890	Cucurbita moschata (Rifu)	cmocpeB551
Cp4.1LG13g02890	Watermelon (Charleston Gray)	cpewcgB173
Cp4.1LG13g02890	Watermelon (97103) v1	cpewmB179
Cp4.1LG13g02890	Cucumber (Gy14) v2	cgybcpeB610
Cp4.1LG13g02890	Melon (DHL92) v3.6.1	cpemedB175
Cp4.1LG13g02890	Silver-seed gourd	carcpeB0760
Cp4.1LG13g02890	Silver-seed gourd	carcpeB1375
Cp4.1LG13g02890	Wax gourd	cpewgoB0229