Cp4.1LG13g02740 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g02740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEmbryo defective 1923
LocationCp4.1LG13 : 2096059 .. 2096560 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTGCACTTATCGCCGGCCTTTCTTCAACCCTAAAGCTTCCTCTTCTCACATCAATTTCATCTTCCCCTTTGAAATTTCGACCTAAAAGCCAAAACGTTCAATTTTGTAGCTCCCCTTACAAAATTCACACCATTTGGAACAAACCCACAAGAAATTGCAATGTGTTATCGCATAATCTAAGTGGGTTTCTAATTTCGAGGAGCTTGGGACCTTTCACTGTCTCCGCCGGAGCTGTTGAACCTCAGAATGATGATAGAGAGGAGGGTACTATGCCGGAACGGTTCAGGTACTTGACCAAAGAAGCTCCTGATCCTCCTGTGAGATGGCCTTTCTTTGTTGGTAAATTCTTCTTCTCTTTACAATTTTGTTTTTCTTAGATGTTTTGGACGTTTAAGAATCATTTCTGTTCTTGGTTTGTTTAATTTTACCACTTCGATTCAGTATAATCTTCAAACTTGTTAGTGGGGTTTGCGATTGTTGTTGAATTCAGGGTAG

mRNA sequence

ATGGCGACTGCACTTATCGCCGGCCTTTCTTCAACCCTAAAGCTTCCTCTTCTCACATCAATTTCATCTTCCCCTTTGAAATTTCGACCTAAAAGCCAAAACGTTCAATTTTGTAGCTCCCCTTACAAAATTCACACCATTTGGAACAAACCCACAAGAAATTGCAATGTGTTATCGCATAATCTAAGTGGGTTTCTAATTTCGAGGAGCTTGGGACCTTTCACTGTCTCCGCCGGAGCTGTTGAACCTCAGAATGATGATAGAGAGGAGGGTACTATGCCGGAACGGTTCAGGTACTTGACCAAAGAAGCTCCTGATCCTCCTGTGAGATGGCCTTTCTTTGTTGGGTAG

Coding sequence (CDS)

ATGGCGACTGCACTTATCGCCGGCCTTTCTTCAACCCTAAAGCTTCCTCTTCTCACATCAATTTCATCTTCCCCTTTGAAATTTCGACCTAAAAGCCAAAACGTTCAATTTTGTAGCTCCCCTTACAAAATTCACACCATTTGGAACAAACCCACAAGAAATTGCAATGTGTTATCGCATAATCTAAGTGGGTTTCTAATTTCGAGGAGCTTGGGACCTTTCACTGTCTCCGCCGGAGCTGTTGAACCTCAGAATGATGATAGAGAGGAGGGTACTATGCCGGAACGGTTCAGGTACTTGACCAAAGAAGCTCCTGATCCTCCTGTGAGATGGCCTTTCTTTGTTGGGTAG

Protein sequence

MATALIAGLSSTLKLPLLTSISSSPLKFRPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSHNLSGFLISRSLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVG
Homology
[Close]
BLAST of Cp4.1LG13g02740 vs. TrEMBL
Match: E5GBC6_CUCME (Putative uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-38
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 1 

Query: 1   MATALIAGLSSTLKLPLLTSISSSPLKFRPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSH 60
           MAT+LIA LSS LKLP+L++ISSSP  FR ++Q V F +SP+KI T+W  PTRNCNVLSH
Sbjct: 1   MATSLIAALSSNLKLPILSAISSSPSTFRLQTQTVPFSNSPFKIQTLWLNPTRNCNVLSH 60

Query: 61  NLSGFLISRSLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFV 116
           N SGFLISR L  FTV A   E Q+DDREE T+PERFRYLTKEAPDPPVRWPFFV
Sbjct: 61  NRSGFLISRKLESFTVFAADSEAQSDDREESTLPERFRYLTKEAPDPPVRWPFFV 115

[Close]
BLAST of Cp4.1LG13g02740 vs. TrEMBL
Match: A0A0A0KM42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141030 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 1 

Query: 1   MATALIAGLSSTLKLPLLTSISSSPLKFRPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSH 60
           MAT LIA LSS LKLPLL++ISSSP  FR ++Q V F +SP  I T+W  PTRNCNV+SH
Sbjct: 1   MATTLIASLSSNLKLPLLSAISSSPSTFRRQTQTVPFSNSP--IQTLWLNPTRNCNVISH 60

Query: 61  NLSGFLISRSLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFV 116
           N SGFLISR L  FTV A   E Q+DDREE TMPERFRYL KE  DPPVRWPFFV
Sbjct: 61  NRSGFLISRKLESFTVFAADFEAQSDDREESTMPERFRYLAKEGSDPPVRWPFFV 113

[Close]
BLAST of Cp4.1LG13g02740 vs. TrEMBL
Match: M5X5M3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008067mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-12
Identity = 55/115 (47.83%), Postives = 64/115 (55.65%), Query Frame = 1 

Query: 4   ALIAGLSSTLKLPLLTSISSSPLKFRPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSHNLS 63
           AL A   STL+L +    S SPL  RP+ Q +QF SS  K+  +      N    S    
Sbjct: 7   ALSAPSPSTLRLKIT---SFSPLSIRPRKQTIQFRSST-KVQILNPIQAHNFPGFSGKAI 66

Query: 64  GFLISRSLGPFTVSA---GAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFV 116
           GFL  R L    VSA   G  E + +   E TMPERFRYLTKEAPDPPVRWP+FV
Sbjct: 67  GFLFERRLR-VRVSAKSDGVDEAEEETGGESTMPERFRYLTKEAPDPPVRWPWFV 116

[Close]
BLAST of Cp4.1LG13g02740 vs. TrEMBL
Match: F6HHK0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00300 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 37/100 (37.00%), Postives = 51/100 (51.00%), Query Frame = 1 

Query: 26  LKFRPKSQNVQFCSSPYKI----------HTIWNKPTRNCNVLSHNLSGFLISRSLGPFT 85
           L  R  S  + FCSSP +I          H ++    +N  VL     GF  +   G   
Sbjct: 30  LFLRNPSNTLAFCSSPTRIQLSKPQIQYTHNLFGFAEKNLGVLRRRKLGFCANAENGEEK 89

Query: 86  VSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFV 116
            +    E   + R + TMPERFR+LTKEAPDPP+RWP+++
Sbjct: 90  SNGSGFEGIEEARRQSTMPERFRHLTKEAPDPPLRWPWYI 129

[Close]
BLAST of Cp4.1LG13g02740 vs. TrEMBL
Match: A0A061EAM2_THECC (Embryo defective 1923 OS=Theobroma cacao GN=TCM_007954 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 47/105 (44.76%), Postives = 56/105 (53.33%), Query Frame = 1 

Query: 18  LTSISSSPLKFRPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSHNLSGFLISRSLGPFTVS 77
           L + S S L    + Q+++  S P +I     KP  N  +LS    GF    +   F VS
Sbjct: 19  LKATSISRLSIPSRHQSLR--SFPSRIPAFTPKPALNFLLLSDKRLGFS-RNAKSEFYVS 78

Query: 78  A-------GAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFV 116
           A       G  E +   R E TMPERFRYLTKEAPDPPVRWPFFV
Sbjct: 79  ARNGGEDGGVDEAERLARGESTMPERFRYLTKEAPDPPVRWPFFV 120

[Close]
BLAST of Cp4.1LG13g02740 vs. TAIR10
Match: AT4G28210.1 (AT4G28210.1 embryo defective 1923)

HSP 1 Score: 52.0 bits (123), Expect = 2.9e-07
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1 

Query: 88  REEGTMPERFRYLTKEAPDPPVRWPFFV 116
           R E TMP+RFRYLTKEAPD P+ WP+FV
Sbjct: 92  RRESTMPDRFRYLTKEAPDSPIIWPWFV 119

[Close]
BLAST of Cp4.1LG13g02740 vs. NCBI nr
Match: gi|659074285|ref|XP_008437523.1| (PREDICTED: uncharacterized protein LOC103482911 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-38
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 1 

Query: 1   MATALIAGLSSTLKLPLLTSISSSPLKFRPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSH 60
           MAT+LIA LSS LKLP+L++ISSSP  FR ++Q V F +SP+KI T+W  PTRNCNVLSH
Sbjct: 1   MATSLIAALSSNLKLPILSAISSSPSTFRLQTQTVPFSNSPFKIQTLWLNPTRNCNVLSH 60

Query: 61  NLSGFLISRSLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFV 116
           N SGFLISR L  FTV A   E Q+DDREE T+PERFRYLTKEAPDPPVRWPFFV
Sbjct: 61  NRSGFLISRKLESFTVFAADSEAQSDDREESTLPERFRYLTKEAPDPPVRWPFFV 115

[Close]
BLAST of Cp4.1LG13g02740 vs. NCBI nr
Match: gi|307135905|gb|ADN33768.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-38
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 1 

Query: 1   MATALIAGLSSTLKLPLLTSISSSPLKFRPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSH 60
           MAT+LIA LSS LKLP+L++ISSSP  FR ++Q V F +SP+KI T+W  PTRNCNVLSH
Sbjct: 1   MATSLIAALSSNLKLPILSAISSSPSTFRLQTQTVPFSNSPFKIQTLWLNPTRNCNVLSH 60

Query: 61  NLSGFLISRSLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFV 116
           N SGFLISR L  FTV A   E Q+DDREE T+PERFRYLTKEAPDPPVRWPFFV
Sbjct: 61  NRSGFLISRKLESFTVFAADSEAQSDDREESTLPERFRYLTKEAPDPPVRWPFFV 115

[Close]
BLAST of Cp4.1LG13g02740 vs. NCBI nr
Match: gi|449456317|ref|XP_004145896.1| (PREDICTED: uncharacterized protein LOC101214502 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-34
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 1 

Query: 1   MATALIAGLSSTLKLPLLTSISSSPLKFRPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSH 60
           MAT LIA LSS LKLPLL++ISSSP  FR ++Q V F +SP  I T+W  PTRNCNV+SH
Sbjct: 1   MATTLIASLSSNLKLPLLSAISSSPSTFRRQTQTVPFSNSP--IQTLWLNPTRNCNVISH 60

Query: 61  NLSGFLISRSLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFV 116
           N SGFLISR L  FTV A   E Q+DDREE TMPERFRYL KE  DPPVRWPFFV
Sbjct: 61  NRSGFLISRKLESFTVFAADFEAQSDDREESTMPERFRYLAKEGSDPPVRWPFFV 113

[Close]
BLAST of Cp4.1LG13g02740 vs. NCBI nr
Match: gi|595938078|ref|XP_007215629.1| (hypothetical protein PRUPE_ppa008067mg [Prunus persica])

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 55/115 (47.83%), Postives = 64/115 (55.65%), Query Frame = 1 

Query: 4   ALIAGLSSTLKLPLLTSISSSPLKFRPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSHNLS 63
           AL A   STL+L +    S SPL  RP+ Q +QF SS  K+  +      N    S    
Sbjct: 7   ALSAPSPSTLRLKIT---SFSPLSIRPRKQTIQFRSST-KVQILNPIQAHNFPGFSGKAI 66

Query: 64  GFLISRSLGPFTVSA---GAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFV 116
           GFL  R L    VSA   G  E + +   E TMPERFRYLTKEAPDPPVRWP+FV
Sbjct: 67  GFLFERRLR-VRVSAKSDGVDEAEEETGGESTMPERFRYLTKEAPDPPVRWPWFV 116

[Close]
BLAST of Cp4.1LG13g02740 vs. NCBI nr
Match: gi|1009127551|ref|XP_015880754.1| (PREDICTED: uncharacterized protein LOC107416740 [Ziziphus jujuba])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 50/118 (42.37%), Postives = 60/118 (50.85%), Query Frame = 1 

Query: 11  STLKLPLLTSISSSPLKF----------RPKSQNVQFCSSPYKIHTIWNKPTRNCNVLSH 70
           ST  +P+L+  +SS L            RP    +QF SSP K  +   KPT + N    
Sbjct: 2   STTTIPILSYPNSSVLNLKTRLLSRIGIRPSYPTLQFRSSPTKTQSSI-KPTFSGNFQGF 61

Query: 71  NLSGFLISRSLGPFTVSA--GAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVG 117
           N       R       S   G  E + + R E TMPERFRYLTKEAPDPPVRWP+FVG
Sbjct: 62  NGKRLSFERRFRVCVGSKDDGIDEAEKEARGESTMPERFRYLTKEAPDPPVRWPWFVG 118

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g02740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g02740 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBC6_CUCME1.6e-3872.17Putative uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=... [more]
A0A0A0KM42_CUCSA1.4e-3469.57Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141030 PE=4 SV=1[more]
M5X5M3_PRUPE4.4e-1247.83Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008067mg PE=4 SV=1[more]
F6HHK0_VITVI1.5e-0937.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00300 PE=4 SV=... [more]
A0A061EAM2_THECC4.5e-0944.76Embryo defective 1923 OS=Theobroma cacao GN=TCM_007954 PE=4 SV=1[more]
BLAST of Cp4.1LG13g02740 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28210.12.9e-0775.00 embryo defective 1923[more]
BLAST of Cp4.1LG13g02740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074285|ref|XP_008437523.1|2.3e-3872.17PREDICTED: uncharacterized protein LOC103482911 [Cucumis melo][more]
gi|307135905|gb|ADN33768.1|2.3e-3872.17hypothetical protein [Cucumis melo subsp. melo][more]
gi|449456317|ref|XP_004145896.1|2.0e-3469.57PREDICTED: uncharacterized protein LOC101214502 [Cucumis sativus][more]
gi|595938078|ref|XP_007215629.1|6.2e-1247.83hypothetical protein PRUPE_ppa008067mg [Prunus persica][more]
gi|1009127551|ref|XP_015880754.1|5.8e-1042.37PREDICTED: uncharacterized protein LOC107416740 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g02740.1Cp4.1LG13g02740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g02740Cucurbita pepo (Zucchini)cpecpeB021
Cp4.1LG13g02740Cucurbita pepo (Zucchini)cpecpeB197
Cp4.1LG13g02740Cucurbita pepo (Zucchini)cpecpeB227
Cp4.1LG13g02740Cucumber (Gy14) v1cgycpeB0542
Cp4.1LG13g02740Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g02740Cucurbita maxima (Rimu)cmacpeB423
Cp4.1LG13g02740Cucurbita maxima (Rimu)cmacpeB602
Cp4.1LG13g02740Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g02740Cucurbita moschata (Rifu)cmocpeB384
Cp4.1LG13g02740Cucurbita moschata (Rifu)cmocpeB551
Cp4.1LG13g02740Wild cucumber (PI 183967)cpecpiB189
Cp4.1LG13g02740Cucumber (Chinese Long) v2cpecuB188
Cp4.1LG13g02740Bottle gourd (USVL1VR-Ls)cpelsiB134
Cp4.1LG13g02740Watermelon (Charleston Gray)cpewcgB167
Cp4.1LG13g02740Watermelon (Charleston Gray)cpewcgB173
Cp4.1LG13g02740Watermelon (97103) v1cpewmB187
Cp4.1LG13g02740Watermelon (97103) v1cpewmB179
Cp4.1LG13g02740Melon (DHL92) v3.5.1cpemeB148
Cp4.1LG13g02740Cucumber (Gy14) v2cgybcpeB610
Cp4.1LG13g02740Melon (DHL92) v3.6.1cpemedB175
Cp4.1LG13g02740Silver-seed gourdcarcpeB0766
Cp4.1LG13g02740Silver-seed gourdcarcpeB0997
Cp4.1LG13g02740Silver-seed gourdcarcpeB1375
Cp4.1LG13g02740Cucumber (Chinese Long) v3cpecucB0226
Cp4.1LG13g02740Wax gourdcpewgoB0229