Cp4.1LG13g01350 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g01350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLate embryogenesis abundant hydroxyproline-rich glycofamily protein, putative
LocationCp4.1LG13 : 933529 .. 934231 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCGGCCAACCTCCCAACGACCGACCGGCCACACTCCGATCAAGGCGCAAAGCATCAGAGAAATGCATCAACACCTTCTGCATTTACCTCTTCGCGATTGCCGCTGTTGCCTGCATCGCCGCTTTGATCCTCGGCCTTGTCGTCGTCCGGGTAAAAACTCCCACAGTGAAATTAACCTCCGTCACGGTAAAAAATCTCCACTACGGCTTTTCACCGACCCCTTTTATGGACGCCACATTAATCGCCGAAATCACAATGGAAAATCCCAATTTCGGGGAGTTCAAGTACGAGGAAGTAACGAACACCACATTGATTTACTACGGCGTGGCGGTCGGAATCGGCGAGGTGAAAACGGTGTCGGTAAATGCCAAGAGTAATAAAAAAGCGAACTTTACGGTGAAAGTGAAACCCAATTCGAGCTTTGTTGACGTGGATTACTTCAGCCATGACTTGGCGATGTTGAAGACGATGAATATGAGCTGCATCGCCGAGTTTAAGGGAAGGGTTCGTTTGTTGAAATTGTTCAAGGAGAAGAAAGTTTCTATGTTGAAATGTACTATGAGCTTGAATTTGAGCTCCCATGGCGTCCAAAATCTCGCTTGCCAATAGAGGAAGAACAGGATTTGACTTTAAGGGTTTGTTAATTATTATTTGTTTTTGTTGGTTTTGATTATAGGCTCAAGGGTATCGTTTGTAA

mRNA sequence

ATGGCGGCCGGCCAACCTCCCAACGACCGACCGGCCACACTCCGATCAAGGCGCAAAGCATCAGAGAAATGCATCAACACCTTCTGCATTTACCTCTTCGCGATTGCCGCTGTTGCCTGCATCGCCGCTTTGATCCTCGGCCTTGTCGTCGTCCGGGTAAAAACTCCCACAGTGAAATTAACCTCCGTCACGGTAAAAAATCTCCACTACGGCTTTTCACCGACCCCTTTTATGGACGCCACATTAATCGCCGAAATCACAATGGAAAATCCCAATTTCGGGGAGTTCAAGTACGAGGAAGTAACGAACACCACATTGATTTACTACGGCGTGGCGGTCGGAATCGGCGAGGTGAAAACGGTGTCGGCTCAAGGGTATCGTTTGTAA

Coding sequence (CDS)

ATGGCGGCCGGCCAACCTCCCAACGACCGACCGGCCACACTCCGATCAAGGCGCAAAGCATCAGAGAAATGCATCAACACCTTCTGCATTTACCTCTTCGCGATTGCCGCTGTTGCCTGCATCGCCGCTTTGATCCTCGGCCTTGTCGTCGTCCGGGTAAAAACTCCCACAGTGAAATTAACCTCCGTCACGGTAAAAAATCTCCACTACGGCTTTTCACCGACCCCTTTTATGGACGCCACATTAATCGCCGAAATCACAATGGAAAATCCCAATTTCGGGGAGTTCAAGTACGAGGAAGTAACGAACACCACATTGATTTACTACGGCGTGGCGGTCGGAATCGGCGAGGTGAAAACGGTGTCGGCTCAAGGGTATCGTTTGTAA

Protein sequence

MAAGQPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKTVSAQGYRL
Homology
[Close]
BLAST of Cp4.1LG13g01350 vs. TrEMBL
Match: A0A0A0KK54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152150 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-38
Identity = 87/122 (71.31%), Postives = 99/122 (81.15%), Query Frame = 1 

Query: 1   MAAGQPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAA + P +R A  RSRRK+ +KC+NTFCI LF  AA ACIAAL  GLVV+RVKTPTVKL
Sbjct: 1   MAADKIPGERTAAHRSRRKSIKKCLNTFCICLFGAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSV VK+L YGFSPTPFM+ATL  E+TMENPN+G F+YE V N TLIYYGV VGIGEVK 
Sbjct: 61  TSVAVKHLQYGFSPTPFMEATLTGEMTMENPNYGAFEYEGVGNVTLIYYGVVVGIGEVKR 120

Query: 121 VS 123
           +S
Sbjct: 121 LS 122

[Close]
BLAST of Cp4.1LG13g01350 vs. TrEMBL
Match: M5WYG1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022176mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-10
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 1 

Query: 9   DRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNL 68
           + P     RR+ S KC     +Y+FA   +  I  L+  LVV+RVK+P   L+SV+VK+L
Sbjct: 23  ENPTFRAIRRERSNKCF----VYVFAAIVLQSIFILVFALVVLRVKSPGFNLSSVSVKSL 82

Query: 69  HYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEV--KTVSAQGY 128
            +  SPT  ++ATL+ E+ ++N NFGE+K+E  ++ +L Y G  VG  ++    V A+G 
Sbjct: 83  KHTTSPTSSLNATLVTELAIKNKNFGEYKFEG-SSASLWYGGFKVGEAKIGKGRVKARGT 138

[Close]
BLAST of Cp4.1LG13g01350 vs. TrEMBL
Match: W9SZD3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006690 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-10
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 1 

Query: 9   DRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNL 68
           + PA    R++ + KC     +Y+FA   +     LI  L+V+R K+P +KL SVTVK+L
Sbjct: 23  ENPAFKALRKERTNKCF----VYIFAGIVILGAILLIFALIVLRSKSPEIKLKSVTVKSL 82

Query: 69  HYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVG 115
            Y  SP P ++ATLIA + ++NPNFG +++    +   +Y G  +G
Sbjct: 83  DYSTSPWPSLNATLIATVAIKNPNFGPYRFGSNNSAVFLYGGGKLG 124

[Close]
BLAST of Cp4.1LG13g01350 vs. TrEMBL
Match: A0A061G6P7_THECC (Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative OS=Theobroma cacao GN=TCM_016355 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.7e-10
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 1 

Query: 13  TLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNLHYGF 72
           T   R++ S KC+    +Y+     +     LI   +V+R +TP V++ SVTV+NL YG 
Sbjct: 29  TASQRKEKSSKCL----VYVLVGMVIQGAVLLIFASIVLRARTPDVEIVSVTVRNLKYGN 88

Query: 73  SPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYG-VAVGIGEVKTVSAQ 125
           S  P  + TL+ E+T+EN NFG+FK+E  T T  ++ G V VG  ++ T  AQ
Sbjct: 89  SSAPSFNLTLVTEVTVENSNFGDFKFENTTGT--VWCGSVVVGKMKIPTGRAQ 135

[Close]
BLAST of Cp4.1LG13g01350 vs. TrEMBL
Match: V4TH84_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023929mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 1 

Query: 11  PATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNLHY 70
           PA + S+RK+S KC+    +Y+         A LI   + +R  TP V+L SVTVKNL +
Sbjct: 26  PAVIESQRKSS-KCL----VYVLVTIVTVSAALLISASIFLRPNTPEVQLESVTVKNLSH 85

Query: 71  GFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVK 120
           G   +P  + TL+ E+T++N N+G F+Y+  + +  ++YG +V +G+VK
Sbjct: 86  GNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGS--VFYG-SVTVGDVK 126

[Close]
BLAST of Cp4.1LG13g01350 vs. TAIR10
Match: AT1G64065.1 (AT1G64065.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 33/107 (30.84%), Postives = 59/107 (55.14%), Query Frame = 1 

Query: 17  RRKASE---KCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNLHYGFS 76
           RRK  E   KC+    +Y   I  +     LIL  + +R+  P ++  S++ ++L  G +
Sbjct: 29  RRKTEEPPGKCL----VYSLTIIVIIFALCLILSSIFLRISKPEIETRSISTRDLRSGGN 88

Query: 77  PT-PFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVK 120
            T P+ +ATL+++I++ N NFG F++E+  +T  + Y     +GE K
Sbjct: 89  STNPYFNATLVSDISIRNSNFGAFEFED--STLRVVYADHGVVGETK 129

[Close]
BLAST of Cp4.1LG13g01350 vs. NCBI nr
Match: gi|659073971|ref|XP_008437351.1| (PREDICTED: uncharacterized protein LOC103482795 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 8.4e-42
Identity = 92/122 (75.41%), Postives = 101/122 (82.79%), Query Frame = 1 

Query: 1   MAAGQPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAA + P DRP   RSRRK+S+KC+N FCI LFA AA ACIAAL  GLVV+RVKTPTVKL
Sbjct: 1   MAADKIPGDRPTAHRSRRKSSKKCLNAFCICLFAAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSV VKNLHYGFSPTPFM+ATL  EITMENPN+G F+YE V N TLIYYGV VGIGEVK 
Sbjct: 61  TSVAVKNLHYGFSPTPFMEATLTGEITMENPNYGAFEYEGVRNVTLIYYGVVVGIGEVKR 120

Query: 121 VS 123
           +S
Sbjct: 121 LS 122

[Close]
BLAST of Cp4.1LG13g01350 vs. NCBI nr
Match: gi|778708243|ref|XP_004143964.2| (PREDICTED: uncharacterized protein LOC101212153 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 2.5e-38
Identity = 87/122 (71.31%), Postives = 99/122 (81.15%), Query Frame = 1 

Query: 1   MAAGQPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAA + P +R A  RSRRK+ +KC+NTFCI LF  AA ACIAAL  GLVV+RVKTPTVKL
Sbjct: 1   MAADKIPGERTAAHRSRRKSIKKCLNTFCICLFGAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSV VK+L YGFSPTPFM+ATL  E+TMENPN+G F+YE V N TLIYYGV VGIGEVK 
Sbjct: 61  TSVAVKHLQYGFSPTPFMEATLTGEMTMENPNYGAFEYEGVGNVTLIYYGVVVGIGEVKR 120

Query: 121 VS 123
           +S
Sbjct: 121 LS 122

[Close]
BLAST of Cp4.1LG13g01350 vs. NCBI nr
Match: gi|700194873|gb|KGN50050.1| (hypothetical protein Csa_5G152150 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 2.5e-38
Identity = 87/122 (71.31%), Postives = 99/122 (81.15%), Query Frame = 1 

Query: 1   MAAGQPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAA + P +R A  RSRRK+ +KC+NTFCI LF  AA ACIAAL  GLVV+RVKTPTVKL
Sbjct: 1   MAADKIPGERTAAHRSRRKSIKKCLNTFCICLFGAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSV VK+L YGFSPTPFM+ATL  E+TMENPN+G F+YE V N TLIYYGV VGIGEVK 
Sbjct: 61  TSVAVKHLQYGFSPTPFMEATLTGEMTMENPNYGAFEYEGVGNVTLIYYGVVVGIGEVKR 120

Query: 121 VS 123
           +S
Sbjct: 121 LS 122

[Close]
BLAST of Cp4.1LG13g01350 vs. NCBI nr
Match: gi|1009156985|ref|XP_015896529.1| (PREDICTED: late embryogenesis abundant protein At1g64065 [Ziziphus jujuba])

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1 

Query: 9   DRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNL 68
           + P     R++ S KC     +Y+F    +  I  L+  LVV+R K+P+VKL SVTVK+L
Sbjct: 22  ENPVFKTIRKERSNKCF----VYVFTAIVLQSIFILVFALVVLRPKSPSVKLRSVTVKSL 81

Query: 69  HYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYG 111
            Y  SP P ++ATL+AEI+++NPNFG FK+E  +  + +Y G
Sbjct: 82  RYTTSPLPSLNATLVAEISIKNPNFGSFKFEN-SAVSFLYEG 118

[Close]
BLAST of Cp4.1LG13g01350 vs. NCBI nr
Match: gi|645267309|ref|XP_008239012.1| (PREDICTED: uncharacterized protein LOC103337622 [Prunus mume])

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-10
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1 

Query: 9   DRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNL 68
           + P     RR+ S KC     +Y+F+   +  I  L+  LVV+RVK+P   L+SV VKNL
Sbjct: 23  ENPTFKAIRRERSNKCF----VYVFSAIVLQSILILVFALVVLRVKSPGFNLSSVVVKNL 82

Query: 69  HYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEV--KTVSAQGY 128
            +  SPT  ++ATL+ E+ ++N NFGE+K+E  ++ +L Y G  VG  ++    V A+G 
Sbjct: 83  KHTTSPTSSLNATLVTELAIKNKNFGEYKFEG-SSASLWYGGFKVGEAKIGKGRVKARGT 138

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g01350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g01350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK54_CUCSA1.8e-3871.31Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152150 PE=4 SV=1[more]
M5WYG1_PRUPE4.5e-1038.84Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022176mg PE=4 SV=1[more]
W9SZD3_9ROSA5.9e-1037.74Uncharacterized protein OS=Morus notabilis GN=L484_006690 PE=4 SV=1[more]
A0A061G6P7_THECC7.7e-1038.94Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative OS... [more]
V4TH84_9ROSI1.9e-0837.61Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023929mg PE=4 SV=1[more]
BLAST of Cp4.1LG13g01350 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G64065.11.6e-0630.84 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
BLAST of Cp4.1LG13g01350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073971|ref|XP_008437351.1|8.4e-4275.41PREDICTED: uncharacterized protein LOC103482795 [Cucumis melo][more]
gi|778708243|ref|XP_004143964.2|2.5e-3871.31PREDICTED: uncharacterized protein LOC101212153 [Cucumis sativus][more]
gi|700194873|gb|KGN50050.1|2.5e-3871.31hypothetical protein Csa_5G152150 [Cucumis sativus][more]
gi|1009156985|ref|XP_015896529.1|2.0e-1143.14PREDICTED: late embryogenesis abundant protein At1g64065 [Ziziphus jujuba][more]
gi|645267309|ref|XP_008239012.1|3.8e-1038.84PREDICTED: uncharacterized protein LOC103337622 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g01350.1Cp4.1LG13g01350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31852FAMILY NOT NAMEDcoord: 10..114
score: 2.2
NoneNo IPR availablePANTHERPTHR31852:SF10SUBFAMILY NOT NAMEDcoord: 10..114
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g01350Cucsa.303590Cucumber (Gy14) v1cgycpeB0789
Cp4.1LG13g01350CmaCh02G014200Cucurbita maxima (Rimu)cmacpeB601
Cp4.1LG13g01350CmoCh15G013230Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g01350Cla011407Watermelon (97103) v1cpewmB183
Cp4.1LG13g01350Csa5G152150Cucumber (Chinese Long) v2cpecuB174
Cp4.1LG13g01350MELO3C005721Melon (DHL92) v3.5.1cpemeB156
Cp4.1LG13g01350ClCG01G002270Watermelon (Charleston Gray)cpewcgB165
Cp4.1LG13g01350CSPI05G04940Wild cucumber (PI 183967)cpecpiB176
Cp4.1LG13g01350Lsi09G002090Bottle gourd (USVL1VR-Ls)cpelsiB131
Cp4.1LG13g01350MELO3C005721.2Melon (DHL92) v3.6.1cpemedB183
Cp4.1LG13g01350CsaV3_5G002340Cucumber (Chinese Long) v3cpecucB0209
Cp4.1LG13g01350Bhi12G000164Wax gourdcpewgoB0222
Cp4.1LG13g01350CsGy5G002250Cucumber (Gy14) v2cgybcpeB597
Cp4.1LG13g01350Carg16609Silver-seed gourdcarcpeB1295
Cp4.1LG13g01350Carg02559Silver-seed gourdcarcpeB1271
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g01350Melon (DHL92) v3.6.1cpemedB192
Cp4.1LG13g01350Silver-seed gourdcarcpeB0837
Cp4.1LG13g01350Cucumber (Chinese Long) v3cpecucB0198
Cp4.1LG13g01350Cucumber (Chinese Long) v3cpecucB0207
Cp4.1LG13g01350Cucumber (Chinese Long) v3cpecucB0242
Cp4.1LG13g01350Cucurbita pepo (Zucchini)cpecpeB196
Cp4.1LG13g01350Cucurbita pepo (Zucchini)cpecpeB206
Cp4.1LG13g01350Cucurbita pepo (Zucchini)cpecpeB226
Cp4.1LG13g01350Cucumber (Gy14) v1cgycpeB0361
Cp4.1LG13g01350Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g01350Cucurbita moschata (Rifu)cmocpeB661
Cp4.1LG13g01350Cucurbita moschata (Rifu)cmocpeB550
Cp4.1LG13g01350Wild cucumber (PI 183967)cpecpiB169
Cp4.1LG13g01350Wild cucumber (PI 183967)cpecpiB175
Cp4.1LG13g01350Wild cucumber (PI 183967)cpecpiB203
Cp4.1LG13g01350Cucumber (Chinese Long) v2cpecuB168
Cp4.1LG13g01350Bottle gourd (USVL1VR-Ls)cpelsiB138
Cp4.1LG13g01350Bottle gourd (USVL1VR-Ls)cpelsiB155
Cp4.1LG13g01350Watermelon (Charleston Gray)cpewcgB174
Cp4.1LG13g01350Watermelon (Charleston Gray)cpewcgB178
Cp4.1LG13g01350Watermelon (97103) v1cpewmB180
Cp4.1LG13g01350Melon (DHL92) v3.5.1cpemeB162