Cp4.1LG12g11270 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g11270
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGlycine-rich protein
LocationCp4.1LG12 : 8884826 .. 8887122 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAAAGAAGAAGAAGAAGTCAAAGAAGAAAATGGCCAAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACTTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATCGGCGGTGCAGTCGGATCGGGTGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAGATGGCGGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGAAGTTGTTCAATCTCGTTTGATTTCTACTTAACATGTTATTGGTCGTTTGAAGTTTAATTACGTTGTTGTAGGTTATGAGTCGTTAATGTTTTCCTTCTAGGCTTTATCAAATTTTCATTAAACTAGTTTGCTTTATGTTGTTAAATTATTTCATTAACTTTATGTCGTTTTTGGTTGATTGATCGAGTTTGGTTGATGCGTTGATGTAGACTCTTGCCTTTATCTAGATAAGTTAATTGAAGATATTCTAACCGTCCCTACCTCATGATATTGCATATCATATGCATTTAGGACACGAGAGCTAGTCAACTCCTTCTTCAACCTCGTTGCCCGTGTATCGTTTACTTTTGACAAGATGGGTTTCGTCCTCCCGTGTCCATGTTTCCACGATGTTCAACTATCTCTAAAACATTTTCAGTTACAAAAGAAACAACGATAATTTTGTAAATATTCAGTCGAAAAATGAAAAGAAACACCTAATGCGTACAATGATTTTTCAACGACCATGGACGGTGACTCTACGACGGAGAATACTCTAAATGGAAATCACAAATCGATAGCTCAACTTTGTCAGATATGGAACGAAAATCCCTTTAAACAAAATTTAGAAGGGAGAAATTCATGGTATATAAAAGAAGACAATTATCTTTATGGGTACCCGATATTTTACGTGATTATATATAAAAATAAATAAATTGAGAAACTAATATCTAAGTGAACAATATTACGCCATCGTGCCAGATATGATATGGAAAATTGAGTAAAATCTTTTTGAAAAAAATAATTACCACTTTTTTACTAGCAATTGACTATAAATAATAATATAGGACAATTACACCATACAAACATGAAAGTTATTGGTCATAACTTCAGGTCGACCATTATTTAAACGCAAAATAATAATAATAAAAAAGGTCGACCATTATTTGTGACTTTAAATTATTTTCCAATTGTTTCGTGTCGATATTCATCTACTCAATTATGGTAATGGTATCAGAGCCAAACACTTGGAGGTGTGTCAATGAAGACACTGAGTCTCGAAGGGAGGTGGACACCAGGTAGTGTGCTAGCAAGGACATTGAGCCCCGAACGAAGGTGGATTGTGAGATCTCACATCGATTGGAGAAACCTAATGCAAATGGAAGCACAAAAAAGACTGATGGTGGACTTGAGCTGTTACAGTTTAATAGCTCGTCTATAACTTATATATGGTTATTGAAATTAAAACCCTAATGCAAATGGACAGATACCATAAGAAGGGTATGTGTGTGAAAAGTTCTTATTTTGGTGAAGACTTGGTGCAGTGGGCTATAGCAATTGCAGAAATTACCACTTTAATTACCCCATTTGGTAATTTCATACGGCCTGGCTCTGCCTTCGCATTTAAACTCATTTACTTTCTTCAACTGTTTCTCAACGCTCTGTGCCCTTTAAAACCCTAAGCTCACAGTGCCATTGGCCAACAACTCACACACAAACACAAGTGTAAGTGTTGGATTAGAGAAGAAGAAAATGGGCAAATTGTTTATGGCTTTGCTTTTGGCACTTGTGGCCACTCACGCCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCATCTCCGGCCTCCCGTTCGGTGGATTGGGTGGTGGTCTTGGTTTTCCTGGTGGAATTGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCGGGCTCGGTGGCCCCGGTGGGATTGGTGGTCTCGGTGGCCCTGGTGGAATTGGTGGAGTAGGTGGAGTTGGAGGACTGGGAGGCACTGGCGGTGGCTTGGGTGGAGGTGGCAGCGGAGGCACCGGTGGTGTTGGTGGCGGTTCTGGTGGCCCTTACCCT

mRNA sequence

AACAAAAGAAGAAGAAGAAGTCAAAGAAGAAAATGGCCAAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACTTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATCGGCGGTGCAGTCGGATCGGGTGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAGATGGCGGTGGTCTCGGTGGTGGCTCTGGTGGAGTTGGAGGACTGGGAGGCACTGGCGGTGGCTTGGGTGGAGGTGGCAGCGGAGGCACCGGTGGTGTTGGTGGCGGTTCTGGTGGCCCTTACCCT

Coding sequence (CDS)

ATGGCCAAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACTTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATCGGCGGTGCAGTCGGATCGGGTGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAGATGGCGGTGGTCTCGGTGGTGGCTCTGGTGGAGTTGGAGGACTGGGAGGCACTGGCGGTGGCTTGGGTGGAGGTGGCAGCGGAGGCACCGGTGGTGTTGGTGGCGGTTCTGGTGGCCCTTACCCT

Protein sequence

MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGTGGGLGGGGSGGTGGVGGGSGGPYP
Homology
[Close]
BLAST of Cp4.1LG12g11270 vs. TrEMBL
Match: A0A0A0K9U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-20
Identity = 98/140 (70.00%), Postives = 106/140 (75.71%), Query Frame = 1 

Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIG+NGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGTGGGLGGGGS 120
           G GG LGGGLGG  GG  GLGG  G GGG+GG     LGG  GG GG+GGT GGLGGG  
Sbjct: 61  GGGG-LGGGLGGGLGG--GLGGGTGIGGGLGG-----LGGPGGGFGGIGGTTGGLGGGLG 120

Query: 121 GGT-----GGVGGGSGGPYP 136
           GG      GGVGG SG  YP
Sbjct: 121 GGLGGGLGGGVGGASGVTYP 132

[Close]
BLAST of Cp4.1LG12g11270 vs. TrEMBL
Match: A0A0A0K6P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336480 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-16
Identity = 76/111 (68.47%), Postives = 83/111 (74.77%), Query Frame = 1 

Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKL +AL LAL+ATHALARP  P  TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GG +
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGT 112
           G  G   GGLGG  GG  G+GGLGG GGG  GG G G GGG G  GG G T
Sbjct: 61  GGTGP--GGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLT 109

[Close]
BLAST of Cp4.1LG12g11270 vs. TrEMBL
Match: V7CWV7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G168900g PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-14
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 1 

Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFG----GI 60
           MAKL + + +  +A    AR  P DA   DQKNFLTYGG+G YSGIGSNGLPFG    GI
Sbjct: 1   MAKLCVLVLVLALAVATSARNAPTDAGLKDQKNFLTYGGVGGYSGIGSNGLPFGGVGAGI 60

Query: 61  GGAVGSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGL 109
           GG  G+GG LGGGLGG   GIGGLGGLGGTGGG+GGG GGG+G G GG  G+
Sbjct: 61  GGGFGAGGGLGGGLGGTT-GIGGLGGLGGTGGGVGGGVGGGVGTGIGGGSGV 111

[Close]
BLAST of Cp4.1LG12g11270 vs. TrEMBL
Match: I1JPC2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G170900 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-13
Identity = 72/110 (65.45%), Postives = 81/110 (73.64%), Query Frame = 1 

Query: 1   MAKL-LMALFLAL-MATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFG---- 60
           MAK+ ++ L LAL +AT A   P P DA   DQKNF++YGG+G YSGIG+NGLPFG    
Sbjct: 1   MAKMCVLVLVLALAVATSARNVPNPKDAGLKDQKNFISYGGVGGYSGIGNNGLPFGGAGA 60

Query: 61  GIGGAVGSGGDLGGGLGGPAGGIGGLGGLG-GTGGGIGGGDGGGLGGGSG 104
           GIGG  G GG LGGGLGGP GGIGG GG G G GGGIGGG G G+GGGSG
Sbjct: 61  GIGGGFGGGGGLGGGLGGPTGGIGGFGGTGSGVGGGIGGGVGTGVGGGSG 110

[Close]
BLAST of Cp4.1LG12g11270 vs. TrEMBL
Match: A0A0L9TH62_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan831s001300 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-12
Identity = 69/111 (62.16%), Postives = 78/111 (70.27%), Query Frame = 1 

Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKL +   +  +A    AR  P DA   DQKNF+TYGG+G YSGIG+NGLPF G G  +
Sbjct: 1   MAKLCVLFLVLALAVATSARNAPTDAGLKDQKNFITYGGVGGYSGIGNNGLPFAGGGAGI 60

Query: 61  GSGGDLGGGLGGPAG---GIGGLGGLGGTGGGIGGGDGGGLGGGSG-GVGG 108
           G G D GGGLGG  G   GIGG+GGLGGTGGGIGGG GGG+G G G GVGG
Sbjct: 61  GGGFDAGGGLGGGLGGTTGIGGIGGLGGTGGGIGGGVGGGVGSGIGNGVGG 111

[Close]
BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: gi|659124371|ref|XP_008462124.1| (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-20
Identity = 96/134 (71.64%), Postives = 105/134 (78.36%), Query Frame = 1 

Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGS--- 65
           MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GGA+G    
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  GGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGTGGGLGGGGSGG 125
           GG LGGGLGG  G  GGLGGLGGTGGG+     GG+GG +GG+G  GG GGGLGGG  GG
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGL-----GGIGGTTGGLG--GGLGGGLGGGLGGG 120

Query: 126 T-GGVGGGSGGPYP 136
             GGVGG SG  YP
Sbjct: 121 LGGGVGGASGVTYP 127

[Close]
BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: gi|778730344|ref|XP_011659762.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 5.6e-20
Identity = 98/140 (70.00%), Postives = 106/140 (75.71%), Query Frame = 1 

Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIG+NGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGTGGGLGGGGS 120
           G GG LGGGLGG  GG  GLGG  G GGG+GG     LGG  GG GG+GGT GGLGGG  
Sbjct: 61  GGGG-LGGGLGGGLGG--GLGGGTGIGGGLGG-----LGGPGGGFGGIGGTTGGLGGGLG 120

Query: 121 GGT-----GGVGGGSGGPYP 136
           GG      GGVGG SG  YP
Sbjct: 121 GGLGGGLGGGVGGASGVTYP 132

[Close]
BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: gi|659124133|ref|XP_008462002.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-17
Identity = 79/113 (69.91%), Postives = 87/113 (76.99%), Query Frame = 1 

Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKL MAL LAL+ATHALARP  P  TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GG V
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGTGG 114
           G  G   GGLGG  GG  G+GGLGG GGG  GG G G+GGG+GG  G+GG  G
Sbjct: 61  GGTGP--GGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSG 111

[Close]
BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: gi|778726832|ref|XP_011659167.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 76/111 (68.47%), Postives = 83/111 (74.77%), Query Frame = 1 

Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKL +AL LAL+ATHALARP  P  TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GG +
Sbjct: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGT 112
           G  G   GGLGG  GG  G+GGLGG GGG  GG G G GGG G  GG G T
Sbjct: 88  GGTGP--GGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLT 136

[Close]
BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: gi|700189336|gb|KGN44569.1| (hypothetical protein Csa_7G336480 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 76/111 (68.47%), Postives = 83/111 (74.77%), Query Frame = 1 

Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKL +AL LAL+ATHALARP  P  TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GG +
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGT 112
           G  G   GGLGG  GG  G+GGLGG GGG  GG G G GGG G  GG G T
Sbjct: 61  GGTGP--GGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLT 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g11270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g11270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9U1_CUCSA3.9e-2070.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1[more]
A0A0A0K6P3_CUCSA9.9e-1668.47Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336480 PE=4 SV=1[more]
V7CWV7_PHAVU3.2e-1464.29Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G168900g PE=4 SV=1[more]
I1JPC2_SOYBN3.5e-1365.45Uncharacterized protein OS=Glycine max GN=GLYMA_03G170900 PE=4 SV=1[more]
A0A0L9TH62_PHAAN5.1e-1262.16Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan831s001300 PE=4 SV=1[more]
BLAST of Cp4.1LG12g11270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124371|ref|XP_008462124.1|3.3e-2071.64PREDICTED: acanthoscurrin-1-like [Cucumis melo][more]
gi|778730344|ref|XP_011659762.1|5.6e-2070.00PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus][more]
gi|659124133|ref|XP_008462002.1|3.4e-1769.91PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo][more]
gi|778726832|ref|XP_011659167.1|1.4e-1568.47PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus][more]
gi|700189336|gb|KGN44569.1|1.4e-1568.47hypothetical protein Csa_7G336480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g11270.1Cp4.1LG12g11270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g11270CsaV3_7G025650Cucumber (Chinese Long) v3cpecucB0182
Cp4.1LG12g11270Carg25548Silver-seed gourdcarcpeB0597
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g11270Wax gourdcpewgoB0209
Cp4.1LG12g11270Cucurbita pepo (Zucchini)cpecpeB165
Cp4.1LG12g11270Cucumber (Gy14) v1cgycpeB0132
Cp4.1LG12g11270Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g11270Cucurbita maxima (Rimu)cmacpeB899
Cp4.1LG12g11270Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g11270Cucurbita moschata (Rifu)cmocpeB837
Cp4.1LG12g11270Wild cucumber (PI 183967)cpecpiB159
Cp4.1LG12g11270Cucumber (Chinese Long) v2cpecuB157
Cp4.1LG12g11270Bottle gourd (USVL1VR-Ls)cpelsiB111
Cp4.1LG12g11270Watermelon (Charleston Gray)cpewcgB129
Cp4.1LG12g11270Watermelon (97103) v1cpewmB135
Cp4.1LG12g11270Melon (DHL92) v3.5.1cpemeB119
Cp4.1LG12g11270Cucumber (Gy14) v2cgybcpeB900
Cp4.1LG12g11270Silver-seed gourdcarcpeB0118