Cp4.1LG12g10870 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g10870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionWound-inducible basic
LocationCp4.1LG12 : 9107422 .. 9109701 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGAGGCCGTGTTGACTTGGGCCGGATACCCGCTCACCCGGCGGCCCAATATGGTTCTATAAAATTCAAGCCTTCATCTTTATCGTTTTTAGATTCGCAACAAATTAGGGTTTCGTTCTGTTTCGTTCTGTTTCGTGAAAGCTTAATATTCTCTCCGACAATGATTTACGACGTTAACTCCCCACTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCCCTTCCGACAAGAGGTATTCTCTATCTTAACGATTTGTATCATTCCGACGAGTCGCCGAACTCTGCATCCTTCTATTATTTTGTTCCTATTTTTTTTTTTTTTTTTTTTTTNTTTCCTAAAAAAAATATTAACAAATTGCTAGAGAGAGAAAGAAAGCGCGTGGGGAATCGTAGGGTTGTGGTGCCTAAAAAATTGTCTCAATTTTTGGAGGGAAATGTGGATTACGCATAGTCTCACCCATACTTTATCAAACCCTCCTAGGAATGCGACACGTGTAAATGCCTTCATAATTAAATTCTTTCTAATTGTGTATTATTTTATTTTATTAAGCGATAAGAGGCCGTGTTGACTTGGGCCGGATACCCGCTCACCCGGCGGCCCAATATGGTTCTATAAAATTCAAGCCTTCATCTTCTCACGCTTTTAGATTCGCAACAAATTAGGGTTTCGTTCTGTTTCGTGAAAGCTTAATATTCTCTCCGACAATNATGTCTAATGACCTTTAACAGGTTGTTAGATTTTCAAGGAGATTTTTGTGTCAATATTATAATCTATCAATTTGAGAGCTTATCTATCATTTTCTTTAGAAATCTGATGTTATGTTGAACGCTTCCTCTTAATTTGTAATTCAAAAGCGTCTTAGTCTTTATTGATGTAATGGCATTAGTGAATATCATTTCTGTTGTCAACTTTTCACCTGATGTCTAAAAAAGCGAGTAACTTAATATCCTTTGATCGATGGAAGATTCTTCGTTGGGTAAAGAATTTGGTTGTCATTTGTTGGCTTGAACTCGTGAGTATTAGGTTTGATTTTTAGCGTAACATGTCTTTTGAAGGACTTGTCCAATCGCTGTTTGTTTAGCCAATCTGCTTACCATCTCTTTCGACCATTCTTGATCCTAAAACCTCTAAATTAGGATTTGATCTTTTTTTATGCCATTTTTTCTCTTATCCTATTGTTGATGTTGATGCTATTTCTCTTACTTTTGCGAAGAATTCCACCATTTTCTAGTTCTGATTTTTAGTTCCAGCCTTGTTAAACTTTTGCGTGGAGTATTAGGCTTGCTTCATAGATTGAATTGGAAACCCATTCATGAGCTTTACGCTAACTAAGATTAATCTCTGAGTGCTCGAATGCAACCATGTAATTGAATGTTGAATATGAAGCGCATACACTTGAGGGTAGGAGGTGTTTATGTGCAAAACGTGTCAAGCATTTGTTAAACATAATAGACATGTATTAAGGTGCACAATTGTTAGACATATATTGCACACTTGTAAACGTAAGGTGAACAAGTGCTGGACATTTGAATTTGAATATGGCGGCATATTTTTTATGATGAACATAAAAAGATATATGCATCATAAAGCTTTATTGGCTTCAAATTCCATTTTCTTTATGATGTTAAATGATTTAGAAAAATGTTGAGTTGGGTTGGGTTTGGTTTCAAATATTTTCCGTGTAAATTGCTACATGATTAGAAGTGGTGACTTGTTTCTTCAACCTTTTTTAATTATTACATATTCAGTTACTTTTATTGCCTTACCTTCATATGAAATATCATTCCCTACAAATTCAGTGTGTTAATCTTTGAATGAATTGAATGGTGTAGGAAAACGGAAGAGCAGAAGCCAAAAGAACAGAGACCAAAAGCCAGTGAGAACAAGCCCGTTATGAATGAATGAGAATAAAGTTGGAGTGAGTTGTTTTGTTTTGGAATTGTTCGATATTATGGACAAGCTTTGAATTGCATCCAAACCCTAAATCCTTTAAAATTGTACCAACCTTTTTAAGGTAAACTGCATATGAATATCATGTTGAGTGCCGTGGGATAATCTCTCCTCTTATTTCTTTGTAGGGATATATTGCTTTATTATATGAGTTTCAAACTTTAAAGTAGAGTGGTGCTAACAATCTGAAACACTTGTCCAACTCGACTCGATTCATATGGTTTTGGGTCGGGTTAGACAAATTCTTACATTGGGTTAAATTTTTTCAAAAATTGATTCCATTTTTTGGGTTTAGAAAATAAATTATTGGTTCATCTCCAAGTGAATTG

mRNA sequence

ATAAGAGGCCGTGTTGACTTGGGCCGGATACCCGCTCACCCGGCGGCCCAATATGGTTCTATAAAATTCAAGCCTTCATCTTTATCGTTTTTAGATTCGCAACAAATTAGGGTTTCGTTCTGTTTCGTTCTGTTTCGTGAAAGCTTAATATTCTCTCCGACAATGATTTACGACGTTAACTCCCCACTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCCCTTCCGACAAGAGGAAAACGGAAGAGCAGAAGCCAAAAGAACAGAGACCAAAAGCCAGTGAGAACAAGCCCGTTATGAATGAATGAGAATAAAGTTGGAGTGAGTTGTTTTGTTTTGGAATTGTTCGATATTATGGACAAGCTTTGAATTGCATCCAAACCCTAAATCCTTTAAAATTGTACCAACCTTTTTAAGGTAAACTGCATATGAATATCATGTTGAGTGCCGTGGGATAATCTCTCCTCTTATTTCTTTGTAGGGATATATTGCTTTATTATATGAGTTTCAAACTTTAAAGTAGAGTGGTGCTAACAATCTGAAACACTTGTCCAACTCGACTCGATTCATATGGTTTTGGGTCGGGTTAGACAAATTCTTACATTGGGTTAAATTTTTTCAAAAATTGATTCCATTTTTTGGGTTTAGAAAATAAATTATTGGTTCATCTCCAAGTGAATTG

Coding sequence (CDS)

ATAAGAGGCCGTGTTGACTTGGGCCGGATACCCGCTCACCCGGCGGCCCAATATGGTTCTATAAAATTCAAGCCTTCATCTTTATCGTTTTTAGATTCGCAACAAATTAGGGTTTCGTTCTGTTTCGTTCTGTTTCGTGAAAGCTTAATATTCTCTCCGACAATGATTTACGACGTTAACTCCCCACTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCCCTTCCGACAAGAGGAAAACGGAAGAGCAGAAGCCAAAAGAACAGAGACCAAAAGCCAGTGAGAACAAGCCCGTTATGAATGAATGA

Protein sequence

IRGRVDLGRIPAHPAAQYGSIKFKPSSLSFLDSQQIRVSFCFVLFRESLIFSPTMIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE
Homology
[Close]
BLAST of Cp4.1LG12g10870 vs. Swiss-Prot
Match: PR4_PHAVU (Wound-induced basic protein OS=Phaseolus vulgaris GN=PR4 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 55  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           MIYDVNSPLFRSFLSQKGG SDKRKTEEQKPKE RPKASENKP+M E
Sbjct: 1   MIYDVNSPLFRSFLSQKGGSSDKRKTEEQKPKEHRPKASENKPIMTE 47

[Close]
BLAST of Cp4.1LG12g10870 vs. TrEMBL
Match: A0A0V0GFI5_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-16
Identity = 52/71 (73.24%), Postives = 55/71 (77.46%), Query Frame = 1 

Query: 31  LDSQQIRVSFCFVLFRESLIFSPTMIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRP 90
           ++  +IRV FC            TMIYDVNSPLFRSFLSQKGG SDKRKTEEQKPKEQRP
Sbjct: 3   VNKAEIRVLFC--------CRPTTMIYDVNSPLFRSFLSQKGGASDKRKTEEQKPKEQRP 62

Query: 91  KASENKPVMNE 102
           KASENKPVMNE
Sbjct: 63  KASENKPVMNE 65

[Close]
BLAST of Cp4.1LG12g10870 vs. TrEMBL
Match: A0A103XNY9_CYNCS (Wound-inducible basic OS=Cynara cardunculus var. scolymus GN=Ccrd_003721 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.7e-15
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1 

Query: 51  FSPTMIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           F  TMIYDVNSPLFRSFLSQKGG SDKRKTEEQ+PKEQ+PKA+ENKPVMNE
Sbjct: 31  FDTTMIYDVNSPLFRSFLSQKGGSSDKRKTEEQRPKEQKPKANENKPVMNE 81

[Close]
BLAST of Cp4.1LG12g10870 vs. TrEMBL
Match: M1BS78_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020101 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           MIYDVNSPLFRSFLSQKGG SDKRKTEEQKPKEQRPKASENKPVMNE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGASDKRKTEEQKPKEQRPKASENKPVMNE 47

[Close]
BLAST of Cp4.1LG12g10870 vs. TrEMBL
Match: K4CAI9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           MIYDVNSPLFRSFLSQKGG SDKRKTEEQKPKEQRPKASENKPVMNE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGASDKRKTEEQKPKEQRPKASENKPVMNE 47

[Close]
BLAST of Cp4.1LG12g10870 vs. TrEMBL
Match: M5VU63_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022347mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-14
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 1 

Query: 54  TMIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           TMIYDVNSPLFRSFLSQKGG SDKRK EEQKPKE RPKASENKPVMNE
Sbjct: 28  TMIYDVNSPLFRSFLSQKGGSSDKRKLEEQKPKEHRPKASENKPVMNE 75

[Close]
BLAST of Cp4.1LG12g10870 vs. TAIR10
Match: AT3G07230.1 (AT3G07230.1 wound-responsive protein-related)

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-12
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 

Query: 55  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           MIYDVNS LFRSFLSQKG  SDKRK E+ KP+EQ+PKAS+NKPVMNE
Sbjct: 1   MIYDVNSGLFRSFLSQKGSSSDKRKMED-KPREQKPKASDNKPVMNE 46

[Close]
BLAST of Cp4.1LG12g10870 vs. NCBI nr
Match: gi|976906818|gb|KVH94218.1| (Wound-inducible basic [Cynara cardunculus var. scolymus])

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-15
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1 

Query: 51  FSPTMIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           F  TMIYDVNSPLFRSFLSQKGG SDKRKTEEQ+PKEQ+PKA+ENKPVMNE
Sbjct: 31  FDTTMIYDVNSPLFRSFLSQKGGSSDKRKTEEQRPKEQKPKANENKPVMNE 81

[Close]
BLAST of Cp4.1LG12g10870 vs. NCBI nr
Match: gi|449464116|ref|XP_004149775.1| (PREDICTED: wound-induced basic protein [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVM E
Sbjct: 1   MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMTE 47

[Close]
BLAST of Cp4.1LG12g10870 vs. NCBI nr
Match: gi|848869241|ref|XP_012835246.1| (PREDICTED: wound-induced basic protein [Erythranthe guttata])

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           MIYDVNSPLFRSFLSQKGG SDKRKTEEQKPKEQRPKASENKPVMNE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGSSDKRKTEEQKPKEQRPKASENKPVMNE 47

[Close]
BLAST of Cp4.1LG12g10870 vs. NCBI nr
Match: gi|460393640|ref|XP_004242417.1| (PREDICTED: wound-induced basic protein [Solanum lycopersicum])

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           MIYDVNSPLFRSFLSQKGG SDKRKTEEQKPKEQRPKASENKPVMNE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGASDKRKTEEQKPKEQRPKASENKPVMNE 47

[Close]
BLAST of Cp4.1LG12g10870 vs. NCBI nr
Match: gi|697106842|ref|XP_009607242.1| (PREDICTED: wound-induced basic protein [Nicotiana tomentosiformis])

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 55  MIYDVNSPLFRSFLSQKGGPSDKRKTEEQKPKEQRPKASENKPVMNE 102
           MIYDVNSPLFRSFLSQKGG SDKRKTEEQKP+EQRPKASENKPVMNE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGASDKRKTEEQKPREQRPKASENKPVMNE 47

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g10870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PR4_PHAVU1.4e-1591.49Wound-induced basic protein OS=Phaseolus vulgaris GN=PR4 PE=2 SV=1[more]
BLAST of Cp4.1LG12g10870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0V0GFI5_SOLCH5.7e-1673.24Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1[more]
A0A103XNY9_CYNCS3.7e-1588.24Wound-inducible basic OS=Cynara cardunculus var. scolymus GN=Ccrd_003721 PE=4 SV... [more]
M1BS78_SOLTU6.2e-1597.87Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020101 PE=4 SV=1[more]
K4CAI9_SOLLC6.2e-1597.87Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M5VU63_PRUPE2.4e-1493.75Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022347mg PE=4 S... [more]
BLAST of Cp4.1LG12g10870 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07230.11.5e-1280.85 wound-responsive protein-related[more]
BLAST of Cp4.1LG12g10870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|976906818|gb|KVH94218.1|5.3e-1588.24Wound-inducible basic [Cynara cardunculus var. scolymus][more]
gi|449464116|ref|XP_004149775.1|5.3e-1597.87PREDICTED: wound-induced basic protein [Cucumis sativus][more]
gi|848869241|ref|XP_012835246.1|9.0e-1597.87PREDICTED: wound-induced basic protein [Erythranthe guttata][more]
gi|460393640|ref|XP_004242417.1|9.0e-1597.87PREDICTED: wound-induced basic protein [Solanum lycopersicum][more]
gi|697106842|ref|XP_009607242.1|2.0e-1495.74PREDICTED: wound-induced basic protein [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012643Wound_ind
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009735 response to cytokinin
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g10870.1Cp4.1LG12g10870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012643Wound-inducible basicPFAMPF08186Wound_indcoord: 55..101
score: 3.4
NoneNo IPR availablePANTHERPTHR36752FAMILY NOT NAMEDcoord: 55..101
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g10870CmaCh08G002330Cucurbita maxima (Rimu)cmacpeB896
Cp4.1LG12g10870CmoCh08G002300Cucurbita moschata (Rifu)cmocpeB834
Cp4.1LG12g10870MELO3C029169.2Melon (DHL92) v3.6.1cpemedB146
Cp4.1LG12g10870CsGy7G013110Cucumber (Gy14) v2cgybcpeB900
Cp4.1LG12g10870Carg05055Silver-seed gourdcarcpeB0116
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g10870Wax gourdcpewgoB0209
Cp4.1LG12g10870Cucurbita pepo (Zucchini)cpecpeB160
Cp4.1LG12g10870Cucumber (Gy14) v1cgycpeB0132
Cp4.1LG12g10870Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g10870Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g10870Wild cucumber (PI 183967)cpecpiB159
Cp4.1LG12g10870Cucumber (Chinese Long) v2cpecuB157
Cp4.1LG12g10870Bottle gourd (USVL1VR-Ls)cpelsiB111
Cp4.1LG12g10870Watermelon (Charleston Gray)cpewcgB129
Cp4.1LG12g10870Watermelon (97103) v1cpewmB135
Cp4.1LG12g10870Melon (DHL92) v3.5.1cpemeB119
Cp4.1LG12g10870Silver-seed gourdcarcpeB0018
Cp4.1LG12g10870Cucumber (Chinese Long) v3cpecucB0182