Cp4.1LG12g10610 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g10610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUPF0361 protein C3orf37 like
LocationCp4.1LG12 : 9243639 .. 9246403 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGCACCCCGTCCAGAGCATCCGCCATCGCCATCCAACAGCCAAGCATCTGAACTCGACCTTTACTTACCAGTAGAATACTATAGGGAGTGCGGCACAGCATTAAAGAGACGGATGTGCGGAAGAGGCAGTTGTACTCTTGGAGCTGATGACATCCCAAGGGCCTACCACCGCACCGGCGGCCGCGTCCGCACCCTAATCATGGACCGGTAACGTCATTCGGTTCTTTCTTATTTCGTTTTGCTTGACTGTATTTGAATTTTCCCTATATTCCATGTCTAGTAGGTAGGTTCTGAACTTAACGGCTGTGATGTATTTTGCATTTTTTTTTGTTGTTGAATATTTAGTTTTCGTCCATTGTTCAATGTCTCCCCGGGCTCGGATTTGTCGATTGTTGGTCGAGATTATGAATCTGGTGGGGTCTGATTCCTAGTTTTACCGAGAAATCCGAGTAACCTAATTTCTTCAAGACGGTAATTTTCCCTCTTTTGTCTTGTGGTCTTTATCTGGTTTTCGTGTATAGTTTTATTGAAATGGCAGGTACTGTTTTTGTTACCTGTGGTCTGTAAGCATTTGTGTATGCAGGAGCTATTTCGTAGTTTTGTCTTGGTTTAAGTAATTCATGGCTTTTGCTTTTAGAAAATGGTAGTCAATCAATAGTTTTGTTTTTTGCACAATGCAGGGGAGGCTTTCTTGAATTTGTTATTATTGTTTTTGCCGGTGAATTATTTACACTCATACCATTCTTACAACTTCATCATCTCCAGCTTTAGAGTGGTTGCACGGTTAGTCTTATCTTTTCTTATTGGATTTGAATGTTGATGGGGACATGATGGAACTAAAAATTGTCAATCTCTGATGTGGTTGCAATAATTTTGATTTTATTATAGAAAAGATTAGTGTATTAATGTCATATTGTACAACGGTGAAATTAATCTGAGGGGAGGTTTATGGATTATAAGGAATTCCTACTAGCCTTGATAGAAAACAGAGGTTACAAGCTTGTCACATCTTATGAAGGGAAGAAGAATCTGGCAAGGAAATACTGGGAGCCGCCTACTTGAAGACACATAATGGCTTTCATATGGATCCAATGGACATGATCCTCTCTTGGATTTTACCCTTTGGAAAATATGATTAGTAACTTCATTTTTATGTCTTCTTGTGTAGATAAGCTAAAGAATGATAGAAAAATGAACGCTCAAATTCCCCGTAACACATCTGTGAAGCCCGAGCCATCGGAAAGTCCAGAAGAACACGAAAGAGATGTAAACATTAGAGCTTCATCTGAAGAATCAAAGGATTGTCTCGCGAAGTGTTCTTCTGTGACTGTATCTCAAATCAAATGGGACCGTGAAGATATCTCATCTGAGTCAAAAAGTGGCATGGATGACTGTCGTAAGATTGGCAGTAGTCCAAAGATAAGGAAGAAGGGAAGCTTGAAGACTGGTAATGACAACCAATCAACCCTCTTTCAATACTTGGGGAGAAAATAGACAGGCTTACCTTATCCAGACAGGTAAATTGATTACTTGTGCGCCATGACTCATGTTTATATATATGTTGTAGTTTGTTTATCTTGCTGTGTTTGTGTGAGGAATCACGAACCTCCACAATGGTAAGATATTGCCACTTTGAGCATAAGCTCTTATGGCTTTGTTTTTTGTTTTCCCAAAAATCCTCGTACCAATGGAGATAGTATTCCTTACTTATAATAAACCCATGATCAACCAATTAATTAGCCGACGTGGGACTCCTCTTCCAACAATCCTCCCCTCGAACAAAATACACCACAAAGCCTCTCCTGAGGCCTATGGAGCCCTCGAGCAGTCTTCCCTTAATCGAGGCTCGACTTCTTTCCTAGAGCTCTCGAACAAAATACACCCTTTATTCGACATTTGAGTCACTTTTGGTCGTGTTAAATGCAGTGTATTTATGTGGTATAAAAGCAGCTTCTGTTGCTTAGAAGGTAAAGTTCGATCATGTTGATCCTTCCGCTTTTCACTGAACTGTACTCTTTCTGATATGTTTTGTAACAAATCTCCTCTTACTGGTTTTTGCATACTTTTAGTTAGTGAAATTACCCTTTTAGTCTATTTGGTTTCACAGCTGATGGTATAGACAATTACCACTAATCAAATCAAATTATTTTACTTAACTCGGTAAATTCATGCTGAAAATCATTTTGATTTCACTACAGTTCACAGGACAAGAAATTGTACAGATTATACAACAACGTGAAGGGAGACAAGGAGACCACACCACCCAAATGAAATGCTTCATTCATTAAAGAATAAGCATATTCATCAGCTAAGAGGGAACAAAGTTGAACGTAGAAACGGCAAAAGCGAGAAATAAGCTTCTATCAACTTCTCATTTGGAGTTAGCTCTATAATCAACCTCTTCAACATCCGAAAAGGCCCGACCATGACTCGTGACCCAAGACAGAACCCTCGCCGTCGATTCCCAAGTCGTATAGTACTGCTTCTTCGTCGTCGCGACCGTCGTCGTGGACGACACCATCCTATTAACCCAGCTGAGTTCGAGCACATTGGTATGGCCATGGCTTCTCTCTTTAACATTCCCTAATAGCACTTGATCTAGCTCCAATAATGTGATTTTCTGAATTTGAATTTGAATATCTTCATAATGTGATGTATATATATAATATATAGATTGCAACAGGCTTGAAGTTAATAATGGTAGTCATAATGGCTGCAATGATAATAATCATTACATTGAGGCTTGATGCTTTGATTCATAAA

mRNA sequence

TCAGCACCCCGTCCAGAGCATCCGCCATCGCCATCCAACAGCCAAGCATCTGAACTCGACCTTTACTTACCAGTAGAATACTATAGGGAGTGCGGCACAGCATTAAAGAGACGGATGTGCGGAAGAGGCAGTTGTACTCTTGGAGCTGATGACATCCCAAGGGCCTACCACCGCACCGGCGGCCGCGTCCGCACCCTAATCATGGACCGTTTTCGTCCATTGTTCAATGTCTCCCCGGGCTCGGATTTGTCGATTGTTGGTCGAGATTATGAATCTGGTGGGGTACTGTTTTTGTTACCTGTGGTCTATAAGCTAAAGAATGATAGAAAAATGAACGCTCAAATTCCCCGTAACACATCTGTGAAGCCCGAGCCATCGGAAAGTCCAGAAGAACACGAAAGAGATGTAAACATTAGAGCTTCATCTGAAGAATCAAAGGATTGTCTCGCGAAGTGTTCTTCTGTGACTGTATCTCAAATCAAATGGGACCGTGAAGATATCTCATCTGAGTCAAAAAGTGGCATGGATGACTGTCGTAAGATTGGCAGTAGTCCAAAGATAAGGAAGAAGGGAAGCTTGAAGACTGGTAATGACAACCAATCAACCCTCTTTCAATACTTGGGGAGAAAATAGACAGGCTTACCTTATCCAGACAGTTCACAGGACAAGAAATTGTACAGATTATACAACAACGTGAAGGGAGACAAGGAGACCACACCACCCAAATGAAATGCTTCATTCATTAAAGAATAAGCATATTCATCAGCTAAGAGGGAACAAAGTTGAACGTAGAAACGGCAAAAGCGAGAAATAAGCTTCTATCAACTTCTCATTTGGAGTTAGCTCTATAATCAACCTCTTCAACATCCGAAAAGGCCCGACCATGACTCGTGACCCAAGACAGAACCCTCGCCGTCGATTCCCAAGTCGTATAGTACTGCTTCTTCGTCGTCGCGACCGTCGTCGTGGACGACACCATCCTATTAACCCAGCTGAGTTCGAGCACATTGGTATGGCCATGGCTTCTCTCTTTAACATTCCCTAATAGCACTTGATCTAGCTCCAATAATGTGATTTTCTGAATTTGAATTTGAATATCTTCATAATGTGATGTATATATATAATATATAGATTGCAACAGGCTTGAAGTTAATAATGGTAGTCATAATGGCTGCAATGATAATAATCATTACATTGAGGCTTGATGCTTTGATTCATAAA

Coding sequence (CDS)

TCAGCACCCCGTCCAGAGCATCCGCCATCGCCATCCAACAGCCAAGCATCTGAACTCGACCTTTACTTACCAGTAGAATACTATAGGGAGTGCGGCACAGCATTAAAGAGACGGATGTGCGGAAGAGGCAGTTGTACTCTTGGAGCTGATGACATCCCAAGGGCCTACCACCGCACCGGCGGCCGCGTCCGCACCCTAATCATGGACCGTTTTCGTCCATTGTTCAATGTCTCCCCGGGCTCGGATTTGTCGATTGTTGGTCGAGATTATGAATCTGGTGGGGTACTGTTTTTGTTACCTGTGGTCTATAAGCTAAAGAATGATAGAAAAATGAACGCTCAAATTCCCCGTAACACATCTGTGAAGCCCGAGCCATCGGAAAGTCCAGAAGAACACGAAAGAGATGTAAACATTAGAGCTTCATCTGAAGAATCAAAGGATTGTCTCGCGAAGTGTTCTTCTGTGACTGTATCTCAAATCAAATGGGACCGTGAAGATATCTCATCTGAGTCAAAAAGTGGCATGGATGACTGTCGTAAGATTGGCAGTAGTCCAAAGATAAGGAAGAAGGGAAGCTTGAAGACTGGTAATGACAACCAATCAACCCTCTTTCAATACTTGGGGAGAAAATAG

Protein sequence

SAPRPEHPPSPSNSQASELDLYLPVEYYRECGTALKRRMCGRGSCTLGADDIPRAYHRTGGRVRTLIMDRFRPLFNVSPGSDLSIVGRDYESGGVLFLLPVVYKLKNDRKMNAQIPRNTSVKPEPSESPEEHERDVNIRASSEESKDCLAKCSSVTVSQIKWDREDISSESKSGMDDCRKIGSSPKIRKKGSLKTGNDNQSTLFQYLGRK
BLAST of Cp4.1LG12g10610 vs. TrEMBL
Match: A0A0A0K6X8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G371760 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 1

Query: 118 NTSVKPEPSESPEEHERDVNIRASSEESKDCLAKCSSVT--VSQIKWDREDISSESKSGM 177
           NTSVKPE S S EEH+R+VN  ASSEESKDCLAKCSS T    QIK DREDISS+ KSGM
Sbjct: 265 NTSVKPEASPSLEEHKREVNRGASSEESKDCLAKCSSDTSLTYQIKRDREDISSDLKSGM 324

Query: 178 DDCRKIGSSPKIRKKGSLKTGNDNQSTLFQYLGRK 211
           DD  K+GSSPKIRKKG+LKTGNDNQ TLF Y G+K
Sbjct: 325 DDYSKVGSSPKIRKKGNLKTGNDNQLTLFSYFGKK 359

BLAST of Cp4.1LG12g10610 vs. TrEMBL
Match: M5VHM0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018685mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1

Query: 39 MCGRGSCTLGADDIPRAYHRTGGRVRTLIMDRFRPLFNVSPGSDLSIVGRDYESGG 95
          MCGR  CTL ADDIPRA HR+ G VRT+ MDRFRPLFN SPGS+L +V R  E GG
Sbjct: 1  MCGRARCTLRADDIPRACHRSHGPVRTVNMDRFRPLFNASPGSNLPVVRR--EDGG 54

BLAST of Cp4.1LG12g10610 vs. TrEMBL
Match: W9S2R2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015844 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1

Query: 39  MCGRGSCTLGADDIPRAYHRTGGRVRTLIMDRFRPLFNVSPGSDLSIVGRDYESGGVLFL 98
           MCGR  CTL ADD+PRA HR  G VRT+ MDR+RP +NVSPGS++ +V R+  S G  F+
Sbjct: 1   MCGRARCTLRADDVPRACHRNNGSVRTVNMDRYRPSYNVSPGSNIPVVRREDGSDGEGFV 60

Query: 99  L 100
           +
Sbjct: 61  V 61

BLAST of Cp4.1LG12g10610 vs. TrEMBL
Match: A0A067FCI2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0159011mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.1e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1

Query: 39 MCGRGSCTLGADDIPRAYHRTGGRVRTLIMDRFRPLFNVSPGSDLSIVGRDYESGG 95
          MCGR  CTL ADD+PRA HRTG   RTL MDR+RP +NV+PG +L +V RD +  G
Sbjct: 1  MCGRARCTLRADDLPRACHRTGSPARTLNMDRYRPSYNVAPGWNLPVVRRDDDGEG 56

BLAST of Cp4.1LG12g10610 vs. TrEMBL
Match: A0A0B2PTR1_GLYSO (UPF0361 protein C3orf37 like OS=Glycine soja GN=glysoja_026667 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 1

Query: 39  MCGRGSCTLGADDIPRAYHRTGGRVRTLIMDRFRPLFNVSPGSDLSIVGRDYESGGVLFL 98
           MCGR  CTL ADD+PRA HR+    RTL +DR+RP +NVSPG D+ +V RD  SGG  ++
Sbjct: 1   MCGRARCTLRADDVPRACHRSTSPTRTLHIDRYRPAYNVSPGFDVPVVRRDDASGGEGYV 60

Query: 99  LPVVYKLKNDRKMNAQIPRNTSVKPEPSESPEEHERDVNIRASSEESK 147
           L  +            IP  T    +P     +H R  N R+ S + K
Sbjct: 61  LQCM--------KWGLIPSFTKKTEKP-----DHYRMFNARSESIDEK 95

BLAST of Cp4.1LG12g10610 vs. TAIR10
Match: AT2G26470.1 (AT2G26470.1 unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-10
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1

Query: 39 MCGRGSCTLGADDIPRAYHRTGGRVRTLIMDRFRPLFNVSPGSDLSIVGRDYE 92
          MCGR  CTL  DD+PRA HR     R L +DR+RP +NV+PGS + ++ RD E
Sbjct: 1  MCGRTRCTLRPDDVPRASHRHTVPTRFLHLDRYRPSYNVAPGSYIPVLRRDNE 53

BLAST of Cp4.1LG12g10610 vs. NCBI nr
Match: gi|778727171|ref|XP_011659221.1| (PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 1

Query: 118 NTSVKPEPSESPEEHERDVNIRASSEESKDCLAKCSSVT--VSQIKWDREDISSESKSGM 177
           NTSVKPE S S EEH+R+VN  ASSEESKDCLAKCSS T    QIK DREDISS+ KSGM
Sbjct: 263 NTSVKPEASPSLEEHKREVNRGASSEESKDCLAKCSSDTSLTYQIKRDREDISSDLKSGM 322

Query: 178 DDCRKIGSSPKIRKKGSLKTGNDNQSTLFQYLGRK 211
           DD  K+GSSPKIRKKG+LKTGNDNQ TLF Y G+K
Sbjct: 323 DDYSKVGSSPKIRKKGNLKTGNDNQLTLFSYFGKK 357

BLAST of Cp4.1LG12g10610 vs. NCBI nr
Match: gi|778727168|ref|XP_011659220.1| (PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X1 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 1

Query: 118 NTSVKPEPSESPEEHERDVNIRASSEESKDCLAKCSSVT--VSQIKWDREDISSESKSGM 177
           NTSVKPE S S EEH+R+VN  ASSEESKDCLAKCSS T    QIK DREDISS+ KSGM
Sbjct: 265 NTSVKPEASPSLEEHKREVNRGASSEESKDCLAKCSSDTSLTYQIKRDREDISSDLKSGM 324

Query: 178 DDCRKIGSSPKIRKKGSLKTGNDNQSTLFQYLGRK 211
           DD  K+GSSPKIRKKG+LKTGNDNQ TLF Y G+K
Sbjct: 325 DDYSKVGSSPKIRKKGNLKTGNDNQLTLFSYFGKK 359

BLAST of Cp4.1LG12g10610 vs. NCBI nr
Match: gi|659116514|ref|XP_008458106.1| (PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 2.4e-14
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 1

Query: 39 MCGRGSCTLGADDIPRAYHRTGGRVRTLIMDRFRPLFNVSPGSDLSIVGRDYES--GGVL 97
          MCGR  CTL ADDI RA HRTGG VR+L MDRFRPLFN SPGSDL +V RD ES  GGV+
Sbjct: 1  MCGRARCTLRADDITRACHRTGGPVRSLNMDRFRPLFNASPGSDLPVVRRDDESSDGGVV 60

BLAST of Cp4.1LG12g10610 vs. NCBI nr
Match: gi|659116512|ref|XP_008458105.1| (PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X1 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 2.4e-14
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 1

Query: 39 MCGRGSCTLGADDIPRAYHRTGGRVRTLIMDRFRPLFNVSPGSDLSIVGRDYES--GGVL 97
          MCGR  CTL ADDI RA HRTGG VR+L MDRFRPLFN SPGSDL +V RD ES  GGV+
Sbjct: 1  MCGRARCTLRADDITRACHRTGGPVRSLNMDRFRPLFNASPGSDLPVVRRDDESSDGGVV 60

BLAST of Cp4.1LG12g10610 vs. NCBI nr
Match: gi|595790637|ref|XP_007199067.1| (hypothetical protein PRUPE_ppa018685mg [Prunus persica])

HSP 1 Score: 80.1 bits (196), Expect = 5.1e-12
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1

Query: 39 MCGRGSCTLGADDIPRAYHRTGGRVRTLIMDRFRPLFNVSPGSDLSIVGRDYESGG 95
          MCGR  CTL ADDIPRA HR+ G VRT+ MDRFRPLFN SPGS+L +V R  E GG
Sbjct: 1  MCGRARCTLRADDIPRACHRSHGPVRTVNMDRFRPLFNASPGSNLPVVRR--EDGG 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6X8_CUCSA1.1e-2675.79Uncharacterized protein OS=Cucumis sativus GN=Csa_7G371760 PE=4 SV=1[more]
M5VHM0_PRUPE3.5e-1269.64Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018685mg PE=4 SV=1[more]
W9S2R2_9ROSA1.0e-1157.38Uncharacterized protein OS=Morus notabilis GN=L484_015844 PE=4 SV=1[more]
A0A067FCI2_CITSI5.1e-1160.71Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0159011mg PE=4 ... [more]
A0A0B2PTR1_GLYSO1.1e-1041.67UPF0361 protein C3orf37 like OS=Glycine soja GN=glysoja_026667 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G26470.13.9e-1052.83 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778727171|ref|XP_011659221.1|1.6e-2675.79PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein ... [more]
gi|778727168|ref|XP_011659220.1|1.6e-2675.79PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein ... [more]
gi|659116514|ref|XP_008458106.1|2.4e-1473.33PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein ... [more]
gi|659116512|ref|XP_008458105.1|2.4e-1473.33PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein ... [more]
gi|595790637|ref|XP_007199067.1|5.1e-1269.64hypothetical protein PRUPE_ppa018685mg [Prunus persica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g10610.1Cp4.1LG12g10610.1mRNA