Cp4.1LG12g10130 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g10130
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Light-regulated
Location	Cp4.1LG12 : 9735152 .. 9737801 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATTATTGGTCTAAAACCTTATCCATTCACGAGATATCTTGCCATCTCTATCTGTTGAGCCTTATAAATCTGAATTCCACTCTAAAGATACATCCAGGCATCAAGTTCGCAGCAGACAGCCATTGTTCATCATGCAGTTGCAGGCAGCTCCTTCCCTGGCACATCCATCCTCATGCTACCTTCTCCCACCAACTACCAAATTGATGGCGTTCTCAATCCCATCTAGGTCCAAGCGAAGGCACCCCACTTCACAAACTCATCGCCCCATCCTAAAAGCGAAGGCAAGTGCGGTTGGACAAGACCCTTCAACGGTTGACTACAGCTCCGTGTCCTCGTAAGCTAAATCATTTTAGTTCTCATTGTTACACAACAATATATCAAATTCAATACCTTCATTTGCCCTTCTGTGTTGGTTTTTGGAAGTGTTTTTCCAGCAGAGGCTTGTGAAACTGTTGGAGGTGAAGCTTGTGATGTCGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCTAAAAAGGGAGGCAGTGTCTCAGAGGCAGTTGATAGAGAGTATCTACAATATGACAGTCCTAAGACGTAAGATCTCTCATTTCCTATGAAACAACACTGTTTCATGCTTGAATATGCATTGATAATCTTGGTTTTTAATGATTGCTGCAGAGTCTTTCCTGCGGAGGCTTGTGATGATCTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAGGGAGTTTACTAGAAAAAACTTGTTGGGAAAAGGAGCTTCCAGTTGTTTTCTTTTCCTCCCCTCTTTACTGACTTCCTATTATGCTTGTAAATGATTAGTAGACTACGAAGTTCTTCAATACTGAGCAATACTTGATACTCTCCAACAACATAAAAAACTATCTGAGTTTTTTGTGATCATCTGAAAGGCAATAATCTTCCCAAAACAGCACTCAAACTGTTTCAAGATTGGGACATCGAAATACTCGATTGATTGTGAATAGTAAGAATATACAGACAGCAATTAATCACTTACAAATGAAGCGCTGAAGGTGCCAAGATTGTTAATACTTCTCAAGATGAACCATCAAGATCCATCACCTGCAACATTAACCACAATTAACTCAATGACAGAAGGTCAAAATGGCATATCAGTTAACAATCATGAAGGCCACACAATCAGTTTGCTCTATTGCTAAGTCTCATCCACGAGGATTAACGCATTTTTGTTGACATCGTGTTTTAACGAGATGGCGAAACGCTGAGAAATACGTCTTAAAATCCTTCGTCGTCCTCCAAATACCTTGGAATTCAGAATTAGAGAATACAGACTGTGAAGAGTATCAGACTGCATAAGCCATGGCTAAGGCTAAAAAAGATACGACATTTTTTAGGTTTATAAACTTCAATTTTTTTTTAAAAGTCTCTTAAATATTTTAAAAACAAATTGAAACACTTCAGTTGAGAATTAAATAGACAGAGAAAGTCAAGTGAGTATCATGGTGTAATTTAACGTTGGCAAAAGTGAAGTGGAAAATTCCTGTGTTTCACAGTTTTAAGGTAAACTTTCTGACAGATTTTCGCATGCACAAAACACATTTTCAGCTGTGGTTCTTCAATTTTTTCCCCAATTAGGTTTTTATCTAGGAGATTTCGGACATATTTTGAACGTATTCTATGTTTTCGTCGCAATGTTTGGTTTATATGAAAACTGCTCGATGGAATGCTGCTTGCAATAGAACTGTATTGTATAGCTTTATTGCAGTACTGACTGCTTGCAGCCATTCAGGCTTTGTAAGAGAGGGCAAACAGATTTTGGATTCTATGAGTACTGCATACGACGTAGAACCTACAATTTGATCACTGAGATAGTATGAACGATATAAACTCTCCTGCAGAAACTCTTAAACTTGTAAAATCACCACCAAGTGCTGCATAGACCTATCAATTTCTTCTTCAATGGAAAATTCACAAATGTTTATAACCACCAGAACACCGACTTTCCAACCCAGCTAGACCTATCAATTTCTTTGTATTCCCTATTTTTTTTTCCAGGATAGTAAAGAACATTGTGTACTTGAACCAGGAGGTGATTCTTCCGCCCCACCTCTCTAGAATGCAGAAAGTGACTTTCATATCAGTAGTTCAGTGCATGAGACTTACATTATATTAGCAGAAACAAGGTAACCAACATATATATAGAACATGAGAGGATTTGCCCCCCCCCCCCCCAAAAAAAAAAAACGGCTGATATGAAGGCACTGAACTTTTAGCCAGCGTTGTGACATTGGAAACAAGAACTTGAAATCAGAGCGACACATTATCTAAGGTTATGTAATTGAGTTCAAGCACTCTCTTTACGTGATGCTTCCCACATTCTACGCTCAATTCCCAACTTCCTGAGCTCTGTGAGGCCTTGCTCAACTGAAAATTGGCGTTCACCCACACAAGGGGGATAAAAGAAGAAGAGGAAGGTAAGAAAATGAAAGGAGGCATAAGTATACGATACAAGTAGTCAACTTGTTTTGCAAAACTTACCATCAACAGCATCATGTGATGAAGGAGAGTGAGCACTGCGACTAATCCAGAACTGAAGTCGTTCATTCGCAATATCTTCTTCAATACCATGAGCTTTGGCTCTTCTCCAAAAATATGTAAGCCATGCCT

mRNA sequence

GCATTATTGGTCTAAAACCTTATCCATTCACGAGATATCTTGCCATCTCTATCTGTTGAGCCTTATAAATCTGAATTCCACTCTAAAGATACATCCAGGCATCAAGTTCGCAGCAGACAGCCATTGTTCATCATGCAGTTGCAGGCAGCTCCTTCCCTGGCACATCCATCCTCATGCTACCTTCTCCCACCAACTACCAAATTGATGGCGTTCTCAATCCCATCTAGGTCCAAGCGAAGGCACCCCACTTCACAAACTCATCGCCCCATCCTAAAAGCGAAGGCAAGTGCGGTTGGACAAGACCCTTCAACGGTTGACTACAGCTCCGTGTCCTCTGTTTTTCCAGCAGAGGCTTGTGAAACTGTTGGAGGTGAAGCTTGTGATGTCGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCTAAAAAGGGAGGCAGTGTCTCAGAGGCAGTTGATAGAGAGTATCTACAATATGACAGTCCTAAGACAGTCTTTCCTGCGGAGGCTTGTGATGATCTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAGGGAGTTTACTAGAAAAAACTTGTTGGGAAAAGGAGCTTCCAGTTGTTTTCTTTTCCTCCCCTCTTTACTGACTTCCTATTATGCTTGTAAATGATTAGTAGACTACGAAGTTCTTCAATACTGAGCAATACTTGATACTCTCCAACAACATAAAAAACTATCTGAGTTTTTTGTGATCATCTGAAAGGCAATAATCTTCCCAAAACAGCACTCAAACTGTTTCAAGATTGGGACATCGAAATACTCGATTGATTGTGAATAGTAAGAATATACAGACAGCAATTAATCACTTACAAATGAAGCGCTGAAGGTGCCAAGATTGTTAATACTTCTCAAGATGAACCATCAAGATCCATCACCTGCAACATTAACCACAATTAACTCAATGACAGAAGGTCAAAATGGCATATCAGTTAACAATCATGAAGGCCACACAATCAGTTTGCTCTATTGCTAAGTCTCATCCACGAGGATTAACGCATTTTTGTTGACATCGTGTTTTAACGAGATGGCGAAACGCTGAGAAATACGTCTTAAAATCCTTCGTCGTCCTCCAAATACCTTGGAATTCAGAATTAGAGAATACAGACTGTGAAGAGTATCAGACTGCATAAGCCATGGCTAAGGCTAAAAAAGATACGACATTTTTTAGGTTTATAAACTTCAATTTTTTTTTAAAAGTCTCTTAAATATTTTAAAAACAAATTGAAACACTTCAGTTGAGAATTAAATAGACAGAGAAAGTCAAGTGAGTATCATGGTGTAATTTAACGTTGGCAAAAGTGAAGTGGAAAATTCCTGTGTTTCACAGTTTTAAGGTAAACTTTCTGACAGATTTTCGCATGCACAAAACACATTTTCAGCTGTGGTTCTTCAATTTTTTCCCCAATTAGGTTTTTATCTAGGAGATTTCGGACATATTTTGAACGTATTCTATGTTTTCGTCGCAATGTTTGGTTTATATGAAAACTGCTCGATGGAATGCTGCTTGCAATAGAACTGTATTGTATAGCTTTATTGCAGTACTGACTGCTTGCAGCCATTCAGGCTTTGTAAGAGAGGGCAAACAGATTTTGGATTCTATGAGTACTGCATACGACGTAGAACCTACAATTTGATCACTGAGATAGTATGAACGATATAAACTCTCCTGCAGAAACTCTTAAACTTGTAAAATCACCACCAAGTGCTGCATAGACCTATCAATTTCTTCTTCAATGGAAAATTCACAAATGTTTATAACCACCAGAACACCGACTTTCCAACCCAGCTAGACCTATCAATTTCTTTGTATTCCCTATTTTTTTTTCCAGGATAGTAAAGAACATTGTGTACTTGAACCAGGAGGTGATTCTTCCGCCCCACCTCTCTAGAATGCAGAAAGTGACTTTCATATCAGTAGTTCAGTGCATGAGACTTACATTATATTAGCAGAAACAAGGTAACCAACATATATATAGAACATGAGAGGATTTGCCCCCCCCCCCCCCAAAAAAAAAAAACGGCTGATATGAAGGCACTGAACTTTTAGCCAGCGTTGTGACATTGGAAACAAGAACTTGAAATCAGAGCGACACATTATCTAAGGTTATGTAATTGAGTTCAAGCACTCTCTTTACGTGATGCTTCCCACATTCTACGCTCAATTCCCAACTTCCTGAGCTCTGTGAGGCCTTGCTCAACTGAAAATTGGCGTTCACCCACACAAGGGGGATAAAAGAAGAAGAGGAAGGTAAGAAAATGAAAGGAGGCATAAGTATACGATACAAGTAGTCAACTTGTTTTGCAAAACTTACCATCAACAGCATCATGTGATGAAGGAGAGTGAGCACTGCGACTAATCCAGAACTGAAGTCGTTCATTCGCAATATCTTCTTCAATACCATGAGCTTTGGCTCTTCTCCAAAAATATGTAAGCCATGCCT

Coding sequence (CDS)

ATGCAGTTGCAGGCAGCTCCTTCCCTGGCACATCCATCCTCATGCTACCTTCTCCCACCAACTACCAAATTGATGGCGTTCTCAATCCCATCTAGGTCCAAGCGAAGGCACCCCACTTCACAAACTCATCGCCCCATCCTAAAAGCGAAGGCAAGTGCGGTTGGACAAGACCCTTCAACGGTTGACTACAGCTCCGTGTCCTCTGTTTTTCCAGCAGAGGCTTGTGAAACTGTTGGAGGTGAAGCTTGTGATGTCGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCTAAAAAGGGAGGCAGTGTCTCAGAGGCAGTTGATAGAGAGTATCTACAATATGACAGTCCTAAGACAGTCTTTCCTGCGGAGGCTTGTGATGATCTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAGGGAGTTTACTAG

Protein sequence

MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSKRRHPTSQTHRPILKAKASAVGQDPSTVDYSSVSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

Homology

[Close]

BLAST of Cp4.1LG12g10130 vs. Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-23
Identity = 59/111 (53.15%), Postives = 73/111 (65.77%), Query Frame = 1


Query: 29  IPSRSKRRHPTSQTHRPI---LKAKASAVGQDPSTVDYSSVSSVFPAEACETVGGEACDV 88
           +P+  K R    Q  R +   ++A A+AV  + + VDYSS  SVFP EAC+ +GGEAC+V
Sbjct: 15  LPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNV 74

Query: 89  EMYPEVKLKPEAKKGGS--VSEAVDREYLQYDSPKTVFPAEACDDLGGEFC 135
           +MYPE KL   A    S   +E VDR+YL YD P TVFP EACDDLGGEFC
Sbjct: 75  QMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFC 125

[Close]

BLAST of Cp4.1LG12g10130 vs. TrEMBL
Match: Q39636_CUCSA (CR9 protein OS=Cucumis sativus GN=CR9 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-55
Identity = 116/143 (81.12%), Postives = 123/143 (86.01%), Query Frame = 1


Query: 1   MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSKRRHPTSQTHRPILKAKASAVGQDPST 60
           MQ QAA S+A PS C LLPPT K MAFSIP+RS  R       +  LKAKASAVGQDPST
Sbjct: 1   MQFQAALSIASPS-CSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPST 60

Query: 61  VDYSSVSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG SV+E V+REYLQYDSPKTV
Sbjct: 61  VDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of Cp4.1LG12g10130 vs. TrEMBL
Match: E5GB60_CUCME (Cytokinin-repressed protein CR9 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 63  YSSVSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFP 122
           +S  +SVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG SV+E V+REYLQYDSPKTVFP
Sbjct: 26  FSIQTSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTVFP 85

Query: 123 AEACDDLGGEFCDPEYQKGVY 144
           AEACDDLGGEFCDPEYQKGVY
Sbjct: 86  AEACDDLGGEFCDPEYQKGVY 106

[Close]

BLAST of Cp4.1LG12g10130 vs. TrEMBL
Match: M5XTK9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013059mg PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 81/136 (59.56%), Postives = 102/136 (75.00%), Query Frame = 1


Query: 17  LLPPTTKLMAFSIPSRSKRRH-PTSQTHRPILKA------KASAVGQDPSTVDYSSVSSV 76
           L PP+   +A + P+ +K    P S +   +LK+      KA+ V +DPS VDYSSV+SV
Sbjct: 7   LPPPSVSPLALATPTTTKSLALPCSSSIPRLLKSPRCPPLKAANVTEDPSAVDYSSVTSV 66

Query: 77  FPAEACETVGGEACDVEMYPEVKLKPEAKK--GGSVSEAVDREYLQYDSPKTVFPAEACD 136
           FPAEAC+T+GGEACDVEMYPEVKLKPE +     + SE +DR+YL+YDSPKTVFP EACD
Sbjct: 67  FPAEACDTIGGEACDVEMYPEVKLKPEDRNNTAKTTSEQLDRDYLEYDSPKTVFPGEACD 126

Query: 137 DLGGEFCDPEYQKGVY 144
           DLGGEFC+PEYQ+GV+
Sbjct: 127 DLGGEFCEPEYQRGVH 142

[Close]

BLAST of Cp4.1LG12g10130 vs. TrEMBL
Match: A0A0D2TN62_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G125000 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.5e-34
Identity = 73/96 (76.04%), Postives = 84/96 (87.50%), Query Frame = 1


Query: 50  KASAVGQDPSTVDYSSVSSVFPAEACETVGGEACDVEMYPEVKLKP---EAKKGGSVSEA 109
           KA+ VGQD STVDYSS +SVFPAEAC+T+GGEACDVEM+PEVKLKP   ++ KG + SE 
Sbjct: 36  KATPVGQDNSTVDYSSTASVFPAEACDTLGGEACDVEMFPEVKLKPDQTQSNKGKTGSEQ 95

Query: 110 VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGV 143
           VDREYL+Y+SPKTVF  EACDDLGGEFC+PEYQKGV
Sbjct: 96  VDREYLEYNSPKTVFIGEACDDLGGEFCEPEYQKGV 131

[Close]

BLAST of Cp4.1LG12g10130 vs. TrEMBL
Match: A0A0B0P5I2_GOSAR (Light-regulated OS=Gossypium arboreum GN=F383_02806 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.5e-34
Identity = 73/96 (76.04%), Postives = 83/96 (86.46%), Query Frame = 1


Query: 50  KASAVGQDPSTVDYSSVSSVFPAEACETVGGEACDVEMYPEVKLKP---EAKKGGSVSEA 109
           KA+ VGQD STVDYSS +SVFPAEAC+T+GGEACDVEM+PEVKLKP   ++ KG   SE 
Sbjct: 37  KATPVGQDNSTVDYSSTASVFPAEACDTLGGEACDVEMFPEVKLKPDQTQSNKGKKGSEQ 96

Query: 110 VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGV 143
           VDREYL+Y+SPKTVF  EACDDLGGEFC+PEYQKGV
Sbjct: 97  VDREYLEYNSPKTVFIGEACDDLGGEFCEPEYQKGV 132

[Close]

BLAST of Cp4.1LG12g10130 vs. TAIR10
Match: AT3G26740.1 (AT3G26740.1 CCR-like)

HSP 1 Score: 117.5 bits (293), Expect = 6.9e-27
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 1


Query: 8   SLAHPSSCYLLPPTTKLMAFSIPSRSKRRHPTSQTHRPILKAKASAVGQDPSTVDY-SSV 67
           S++ P   +LLP  TK    S    S R + +S +         S++  DP+TVDY SS+
Sbjct: 18  SVSSPKLTFLLPHATKASRLS----SLRSNNSSSS---------SSLTSDPNTVDYNSSI 77

Query: 68  SSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEAC 127
            SVFPAEACE + G AC  ++YPEVKL  +       SE VDREY +Y+SPKTVF  EAC
Sbjct: 78  LSVFPAEACEVISGYACSADIYPEVKLDTKPVSRPVASEPVDREYEEYNSPKTVFREEAC 137

Query: 128 DDLGGEFCDPEYQK 141
           DDLGGEFC+P++QK
Sbjct: 138 DDLGGEFCEPDFQK 138

[Close]

BLAST of Cp4.1LG12g10130 vs. NCBI nr
Match: gi|525506955|ref|NP_001267523.1| (light-regulated protein-like [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-55
Identity = 116/143 (81.12%), Postives = 123/143 (86.01%), Query Frame = 1


Query: 1   MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSKRRHPTSQTHRPILKAKASAVGQDPST 60
           MQ QAA S+A PS C LLPPT K MAFSIP+RS  R       +  LKAKASAVGQDPST
Sbjct: 1   MQFQAALSIASPS-CSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPST 60

Query: 61  VDYSSVSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG SV+E V+REYLQYDSPKTV
Sbjct: 61  VDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of Cp4.1LG12g10130 vs. NCBI nr
Match: gi|659119906|ref|XP_008459906.1| (PREDICTED: light-regulated protein-like [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 9.6e-55
Identity = 116/143 (81.12%), Postives = 124/143 (86.71%), Query Frame = 1


Query: 1   MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSKRRHPTSQTHRPILKAKASAVGQDPST 60
           MQLQAA S+A P SC LLPPT KLMAFSI +RS  R       +  LKAKASAVGQ+PST
Sbjct: 1   MQLQAALSIA-PPSCSLLPPTAKLMAFSIQTRSLPRQ-----SQGTLKAKASAVGQEPST 60

Query: 61  VDYSSVSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTV 120
           VDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG SV+E V+REYLQYDSPKTV
Sbjct: 61  VDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTV 120

Query: 121 FPAEACDDLGGEFCDPEYQKGVY 144
           FPAEACDDLGGEFCDPEYQKGVY
Sbjct: 121 FPAEACDDLGGEFCDPEYQKGVY 137

[Close]

BLAST of Cp4.1LG12g10130 vs. NCBI nr
Match: gi|764646049|ref|XP_011457519.1| (PREDICTED: light-regulated protein [Fragaria vesca subsp. vesca])

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 90/145 (62.07%), Postives = 105/145 (72.41%), Query Frame = 1


Query: 3   LQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSKRRHPTSQTHR-PILKAKASAVGQDPSTV 62
           +QA   L+ PS    L PTT   +  +P RS    P +Q+ R P LKA  + V  DPSTV
Sbjct: 1   MQATLQLSPPSLLSFLTPTTPTKSLVLPFRSAT--PRAQSSRFPQLKA-TNNVTSDPSTV 60

Query: 63  DYSS-VSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSV--SEAVDREYLQYDSPK 122
           DYSS  +SVFPAEACET+GGEACDVEMYPEVKL+P+ K   +    E  DR+YL+YDSPK
Sbjct: 61  DYSSNATSVFPAEACETIGGEACDVEMYPEVKLEPQGKSTAATPGKEREDRDYLEYDSPK 120

Query: 123 TVFPAEACDDLGGEFCDPEYQKGVY 144
           TVFPAEACDDLGGEFC+PEYQKGVY
Sbjct: 121 TVFPAEACDDLGGEFCEPEYQKGVY 142

[Close]

BLAST of Cp4.1LG12g10130 vs. NCBI nr
Match: gi|307135830|gb|ADN33702.1| (cytokinin-repressed protein CR9 [Cucumis melo subsp. melo])

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-35
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 63  YSSVSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFP 122
           +S  +SVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG SV+E V+REYLQYDSPKTVFP
Sbjct: 26  FSIQTSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREYLQYDSPKTVFP 85

Query: 123 AEACDDLGGEFCDPEYQKGVY 144
           AEACDDLGGEFCDPEYQKGVY
Sbjct: 86  AEACDDLGGEFCDPEYQKGVY 106

[Close]

BLAST of Cp4.1LG12g10130 vs. NCBI nr
Match: gi|1009155806|ref|XP_015895907.1| (PREDICTED: light-regulated protein-like [Ziziphus jujuba])

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-35
Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 1


Query: 18  LPPTTKLMAFSIPSRSKRRHPTSQTHRPILKAKASAVGQDPSTVDY-SSVSSVFPAEACE 77
           L P   + + ++P +S  +  TS T  P L  KA+   QD  T DY  S +SVFPAEACE
Sbjct: 7   LTPLASIKSLALPWKSIPKLLTS-TRSPSLNLKAAPADQDNVTFDYYGSKTSVFPAEACE 66

Query: 78  TVGGEACDVEMYPEVKLKPEAKK--GGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFC 137
           T+GGEACDVEMYPEVKLKPEAKK   G+ +E VDR+Y++YD PKTVFP EACDDLGGEFC
Sbjct: 67  TIGGEACDVEMYPEVKLKPEAKKPTAGTAAEPVDRDYVEYDEPKTVFPGEACDDLGGEFC 126

Query: 138 DPEYQKGVY 144
           +PEYQKGVY
Sbjct: 127 EPEYQKGVY 134

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g10130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LIRP1_ORYSJ	3.3e-23	53.15	Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1	[more]

BLAST of Cp4.1LG12g10130 vs. TrEMBL


Match Name	E-value	Identity	Description
Q39636_CUCSA	1.8e-55	81.12	CR9 protein OS=Cucumis sativus GN=CR9 PE=2 SV=1	[more]
E5GB60_CUCME	2.0e-35	88.89	Cytokinin-repressed protein CR9 OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
M5XTK9_PRUPE	2.0e-35	59.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013059mg PE=4 SV=1	[more]
A0A0D2TN62_GOSRA	6.5e-34	76.04	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G125000 PE=4 SV=1	[more]
A0A0B0P5I2_GOSAR	8.5e-34	76.04	Light-regulated OS=Gossypium arboreum GN=F383_02806 PE=4 SV=1	[more]

BLAST of Cp4.1LG12g10130 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26740.1	6.9e-27	49.25	CCR-like	[more]

BLAST of Cp4.1LG12g10130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525506955\|ref\|NP_001267523.1\|	2.5e-55	81.12	light-regulated protein-like [Cucumis sativus]	[more]
gi\|659119906\|ref\|XP_008459906.1\|	9.6e-55	81.12	PREDICTED: light-regulated protein-like [Cucumis melo]	[more]
gi\|764646049\|ref\|XP_011457519.1\|	1.2e-36	62.07	PREDICTED: light-regulated protein [Fragaria vesca subsp. vesca]	[more]
gi\|307135830\|gb\|ADN33702.1\|	2.9e-35	88.89	cytokinin-repressed protein CR9 [Cucumis melo subsp. melo]	[more]
gi\|1009155806\|ref\|XP_015895907.1\|	2.9e-35	62.79	PREDICTED: light-regulated protein-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009856	Lir1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g10130.1	Cp4.1LG12g10130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009856	Light regulated Lir1	PFAM	PF07207	Lir1	coord: 4..135 score: 2.6
None	No IPR available	PANTHER	PTHR36762	FAMILY NOT NAMED	coord: 4..143 score: 4.3
None	No IPR available	PANTHER	PTHR36762:SF2	A.THALIANA MRNA (ORF19) FROM CHROMOSOME III	coord: 4..143 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g10130	CmaCh17G014030	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g10130	CmoCh17G013530	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g10130	Cla001482	Watermelon (97103) v1	cpewmB156
Cp4.1LG12g10130	Csa6G091870	Cucumber (Chinese Long) v2	cpecuB142
Cp4.1LG12g10130	MELO3C022354	Melon (DHL92) v3.5.1	cpemeB114
Cp4.1LG12g10130	ClCG06G001750	Watermelon (Charleston Gray)	cpewcgB140
Cp4.1LG12g10130	CSPI06G07390	Wild cucumber (PI 183967)	cpecpiB144
Cp4.1LG12g10130	Lsi09G017660	Bottle gourd (USVL1VR-Ls)	cpelsiB103
Cp4.1LG12g10130	MELO3C022354.2	Melon (DHL92) v3.6.1	cpemedB140
Cp4.1LG12g10130	CsaV3_6G007780	Cucumber (Chinese Long) v3	cpecucB0166
Cp4.1LG12g10130	Carg11563	Silver-seed gourd	carcpeB0018
Cp4.1LG12g10130	Carg03808	Silver-seed gourd	carcpeB1355

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g10130	Cucurbita pepo (Zucchini)	cpecpeB170
Cp4.1LG12g10130	Cucumber (Gy14) v1	cgycpeB0907
Cp4.1LG12g10130	Cucurbita maxima (Rimu)	cmacpeB905
Cp4.1LG12g10130	Cucurbita moschata (Rifu)	cmocpeB841
Cp4.1LG12g10130	Cucumber (Gy14) v2	cgybcpeB722
Cp4.1LG12g10130	Wax gourd	cpewgoB0175