Cp4.1LG12g08380 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g08380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Isochorismatase hydrolase family protein
Location	Cp4.1LG12 : 6515202 .. 6517458 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTTTTTCTTCTTTCTTTCAAGAGACTCATTATTGCTCGGAGCTGTTTGGCTATGGCGGATCAATGGAATCACACTGCTCTTCTCGTCATTGACATGCAGGTTCTTTCTTATTCTCTTCTCGACATCCACAACTCTCTTCTTAACCTTCTTCCAATTCTTCGTTTCCAGAAGGATTTCATCGATGAAGGCTCCCCGTTCGCTATACCAGGAGCCCGCGCCATACTCCCAAGCGTGTATCGGGCTGTCGAGATTGCAAGAAAGCGGGGCGTGTTCGTTATCTGGGTTTGTTATTATAACAGCTCAAGCTCACCGCTAGCTAGCTGATATATTATTCTCTTTGACTTTCTGCTTTTAAAACACGGTCTTATAAAAAATGTTTTATTCTCCTCCACAACCGATGTGGGATCTCACGATCCACCTCCCTTCGGGAACCAGCGTCCTCGTTGGCACTTGTTCCCTTCTCTAATCGATGTGGGACCTCCCAATTCACTCTTTCGAGACCAAGTGTCCTTACTGACACACCGCCTCGTGTCCACCCATTTCGAGACTCAGCCTTCTTCTTGGTATATCGCTCGGTATCTGGCTCTGATATTATTTGTAATAGTTGAGATCCCACATCGACTGGGGAGGAGAACAAAATATTTTTGATAAGGGTGTGTAAACCTCTCCCTAACAAATGTTTTTTAAAAATATTGAGGAGAAATCCATAAGAAAGTCTAAAAGGACAATATCTACTGGCTGGGAACCGGGACAGCTACAGTTATTTTGAGTTGTTTTAGGTTTATGTTTGTCGGGGATTGCTGTTCATTTTTTGTTTTGTCGTAGGTTGTCCGAGAGCACGATCCTGAAGGACGAGATGTGGAACGGTTTCGGCGCCATTACTATGGCAATGGGAAGCTGAAGCCAGCTGCAAAGGGAAGCAGAGGGGCAGAGCTTGTAGAAGGCCTTGAAATGAAAGAAGGAGAATATAAGTTGGTGAAAACAAGGTTTAGTGCCTTTTTTGATACTAACTTGCATTCCCTTCTGCAGGGCGTGGGTATCACTCATTTGGTTGTTGCTGGTAAGATACTCCATTTATACTCGATATCTAAGGATTCCCGTCGACTTGGGTGAGGAATCTCCCTTTAAACGAAAAACGAGAGAGGAAATGAGGAGAGACTTCTCTCCATGTGAGATCGAACCTCAGTTAGATAGGTGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTACACGTTTTAAAACAGTGAGGCTGATGACAATAAGTAACTGGTCAAAGTAGATAATATCTGCTAGTGGTGAGATTGGCCTGTTACAAATGGTATCATGACGCTTGCTCCCAAAGGATGGATTGTGAGATCCCACATCCATGGGAGAGGAGAACAAAACATTTCTTATAAGGGTATGGAAACCTCTCCCTAGCAGACACGTAACGGGTCACAGTGGACAATATCTACTAGCAGTTGGCATGAGCTGTTATAAATGGTATCAGAGCAAAGCACCGAGCGGTGAGCCAACGAGGACGTTGGACCCCTAAAGGGGTGTATTGTGAGATCCCATATCGATTGAAAAGGAGAATGAAAACTTTCCTTATAAAAGTATGGAAACCTCTCCCTAATAGATGCGTTTTGGCGATACATAATGAGCCAAAACAAACAATATCTACTAAATGTGGGCTTATGCCGTTACACCCAGTTAGCTAAACGATAACTGAGATTATATTTTCCGTCTCTGTCTCTACCGTGCACCAATGCATTCCTTTGAATTTGTAGGTGTTCAAACGCCAAACTGTATCAGACAGACAGTTTTTGATGCTGTGTCTTTGGATTACCATTCAATCACTCTTCTTAGTGATGCAACGGCAGCTGCCACTCCCAAAATCCATCAGGGTAAGTGAGCTTTCTACTCCAAATCCTTTCCATTTCTAACAACAATTCATAGATTATAACGCTTTGAGATGGTAAAAAACACAGATAATATCACTGACATCAAAAATGTGGGCGTTGTGGCCTCAAAAGTTGATGAATGGGGCCACTCTGATGCTTGAACAGCCCCCCTCTGCCATGGTTCGATCTCCCGACCACTCAACGTTACAACGTGCATCTCGTTTTCTTTTATCGGTGTGTAAAATTTAAATAATCGAAACACTCCCTATGTTGTTGGACTTTCTTCGTGAATGATGAACGAATCAGTTACCCTTTTTAATTTAAAAAAAATCGGAAGCGTTTGATATAAAGATGTTTATTTAA

mRNA sequence

AATGTTTTTCTTCTTTCTTTCAAGAGACTCATTATTGCTCGGAGCTGTTTGGCTATGGCGGATCAATGGAATCACACTGCTCTTCTCGTCATTGACATGCAGGTTGTCCGAGAGCACGATCCTGAAGGACGAGATGTGGAACGGTTTCGGCGCCATTACTATGGCAATGGGAAGCTGAAGCCAGCTGCAAAGGGAAGCAGAGGGGCAGAGCTTGTAGAAGGCCTTGAAATGAAAGAAGGAGAATATAAGTTGGTGAAAACAAGGTTTAGTGCCTTTTTTGATACTAACTTGCATTCCCTTCTGCAGGGCGTGGGTATCACTCATTTGGTTGTTGCTGGTGTTCAAACGCCAAACTGTATCAGACAGACAGTTTTTGATGCTGTGTCTTTGGATTACCATTCAATCACTCTTCTTAGTGATGCAACGGCAGCTGCCACTCCCAAAATCCATCAGGATAATATCACTGACATCAAAAATGTGGGCGTTGTGGCCTCAAAAGTTGATGAATGGGGCCACTCTGATGCTTGAACAGCCCCCCTCTGCCATGGTTCGATCTCCCGACCACTCAACGTTACAACGTGCATCTCGTTTTCTTTTATCGGTGTGTAAAATTTAAATAATCGAAACACTCCCTATGTTGTTGGACTTTCTTCGTGAATGATGAACGAATCAGTTACCCTTTTTAATTTAAAAAAAATCGGAAGCGTTTGATATAAAGATGTTTATTTAA

Coding sequence (CDS)

AATGTTTTTCTTCTTTCTTTCAAGAGACTCATTATTGCTCGGAGCTGTTTGGCTATGGCGGATCAATGGAATCACACTGCTCTTCTCGTCATTGACATGCAGGTTGTCCGAGAGCACGATCCTGAAGGACGAGATGTGGAACGGTTTCGGCGCCATTACTATGGCAATGGGAAGCTGAAGCCAGCTGCAAAGGGAAGCAGAGGGGCAGAGCTTGTAGAAGGCCTTGAAATGAAAGAAGGAGAATATAAGTTGGTGAAAACAAGGTTTAGTGCCTTTTTTGATACTAACTTGCATTCCCTTCTGCAGGGCGTGGGTATCACTCATTTGGTTGTTGCTGGTGTTCAAACGCCAAACTGTATCAGACAGACAGTTTTTGATGCTGTGTCTTTGGATTACCATTCAATCACTCTTCTTAGTGATGCAACGGCAGCTGCCACTCCCAAAATCCATCAGGATAATATCACTGACATCAAAAATGTGGGCGTTGTGGCCTCAAAAGTTGATGAATGGGGCCACTCTGATGCTTGA

Protein sequence

NVFLLSFKRLIIARSCLAMADQWNHTALLVIDMQVVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFDTNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPKIHQDNITDIKNVGVVASKVDEWGHSDA

Homology

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BLAST of Cp4.1LG12g08380 vs. Swiss-Prot
Match: NIC4_ARATH (Probable inactive nicotinamidase At3g16190 OS=Arabidopsis thaliana GN=At3g16190 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-45
Identity = 90/142 (63.38%), Postives = 114/142 (80.28%), Query Frame = 1


Query: 30  VIDMQVVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEM-KEGEYKLVKTR 89
           ++ + VVREHD +GRDVE FRRH Y + K+ P  KG+ GAELV+GL + +E +YK+VKTR
Sbjct: 50  ILVIWVVREHDRQGRDVELFRRHNYSSEKVGPVIKGTVGAELVDGLMINEEDDYKIVKTR 109

Query: 90  FSAFFDTNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPK 149
           FSAFF TNLHS LQ  G+T LV+AGVQTPNCIRQTVFDAV+LDY ++T+++DATAAATP+
Sbjct: 110 FSAFFSTNLHSFLQTSGVTKLVIAGVQTPNCIRQTVFDAVALDYPNVTVITDATAAATPE 169

Query: 150 IHQDNITDIKNVGVVASKVDEW 171
           IH  NI D+KN+GV    + EW
Sbjct: 170 IHTANILDMKNIGVKTPTLHEW 191

[Close]

BLAST of Cp4.1LG12g08380 vs. Swiss-Prot
Match: RUTB_PANAM (Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Pantoea ananatis (strain LMG 20103) GN=rutB PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 60  KPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFDTNLHSLLQGVGITHLVVAGVQTPNC 119
           K  AKG    +LV+ L+ + G+  L K R+S FF+T L SLL+  GI HLV  G+ T  C
Sbjct: 127 KLLAKGDWDYDLVDELQPQPGDIVLPKPRYSGFFNTQLDSLLRSYGIHHLVFTGIATNVC 186

Query: 120 IRQTVFDAVSLDYHSITLLSDATAAATPKIHQ 152
           +  T+ D   L+Y  + +L DAT  A P+  Q
Sbjct: 187 VESTLRDGFFLEYFGV-VLEDATHQAGPEFAQ 217

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BLAST of Cp4.1LG12g08380 vs. Swiss-Prot
Match: RUTB_CAUST (Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) GN=rutB PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1


Query: 60  KPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFDTNLHSLLQGVGITHLVVAGVQTPNC 119
           K  A+G    ELV+ L+ + G+ +L KTR+S FF++ L S+L+  GI HLV  G+ T  C
Sbjct: 118 KLLARGQWDYELVDELKPQPGDIQLHKTRYSGFFNSQLDSVLRARGIRHLVFVGIATNVC 177

Query: 120 IRQTVFDAVSLDYHSITLLSDATAAATPKIHQ 152
           +  T+ D   L+Y   T+L DAT  A P+  Q
Sbjct: 178 VESTLRDGFFLEYFG-TVLEDATHQAGPEFVQ 208

[Close]

BLAST of Cp4.1LG12g08380 vs. Swiss-Prot
Match: RUTB_ECOLI (Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli (strain K12) GN=rutB PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 60  KPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFDTNLHSLLQGVGITHLVVAGVQTPNC 119
           K  AKGS   +LV+ L  + G+  L K R+S FF+T L S+L+  GI HLV  G+ T  C
Sbjct: 107 KLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVC 166

Query: 120 IRQTVFDAVSLDYHSITLLSDATAAATPKIHQ 152
           +  T+ D   L+Y  + +L DAT  A PK  Q
Sbjct: 167 VESTLRDGFFLEYFGV-VLEDATHQAGPKFAQ 197

[Close]

BLAST of Cp4.1LG12g08380 vs. Swiss-Prot
Match: RUTB_ECOBW (Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rutB PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 60  KPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFDTNLHSLLQGVGITHLVVAGVQTPNC 119
           K  AKGS   +LV+ L  + G+  L K R+S FF+T L S+L+  GI HLV  G+ T  C
Sbjct: 107 KLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVC 166

Query: 120 IRQTVFDAVSLDYHSITLLSDATAAATPKIHQ 152
           +  T+ D   L+Y  + +L DAT  A PK  Q
Sbjct: 167 VESTLRDGFFLEYFGV-VLEDATHQAGPKFAQ 197

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BLAST of Cp4.1LG12g08380 vs. TrEMBL
Match: A0A0A0K7E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447030 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.9e-60
Identity = 116/137 (84.67%), Postives = 125/137 (91.24%), Query Frame = 1


Query: 35  VVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFD 94
           VVREHD EGRDVERFRRHYYGNGK  P+ KGS+GAELVEGLE+KEGEYKLVKTRFSAFF+
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPSVKGSKGAELVEGLEIKEGEYKLVKTRFSAFFN 114

Query: 95  TNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPKIHQDNI 154
           TNLHSLLQG GIT LVV GVQTPNCIRQTVFDAV+LDYHSITLL DATAAATPKIH DN 
Sbjct: 115 TNLHSLLQGAGITDLVVCGVQTPNCIRQTVFDAVALDYHSITLLYDATAAATPKIHHDNT 174

Query: 155 TDIKNVGVVASKVDEWG 172
           TD++NVGVV  +VD+WG
Sbjct: 175 TDMENVGVVVKRVDQWG 191

[Close]

BLAST of Cp4.1LG12g08380 vs. TrEMBL
Match: A0A059AI19_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02954 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.2e-51
Identity = 99/139 (71.22%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 35  VVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFD 94
           VVREHDP+GRDVE FRRH+Y +GKL P +KGS GAELV+GLE++EG+YKLVKTRFSAFF 
Sbjct: 55  VVREHDPQGRDVELFRRHFYSSGKLGPTSKGSAGAELVDGLEIREGDYKLVKTRFSAFFA 114

Query: 95  TNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPKIHQDNI 154
           T+LHS+LQG GI  LV+AGVQTPNCIRQTVFDAV+LDY S+T+L DATAAATP++H  NI
Sbjct: 115 THLHSVLQGAGIDSLVIAGVQTPNCIRQTVFDAVALDYRSVTVLVDATAAATPEVHHANI 174

Query: 155 TDIKNVGVVASKVDEWGHS 174
            D+KN+GV    + EW  S
Sbjct: 175 FDMKNIGVSTPTLQEWRQS 193

[Close]

BLAST of Cp4.1LG12g08380 vs. TrEMBL
Match: K4BMK3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.8e-49
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = 1


Query: 35  VVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFD 94
           VVREHDP GRDVE FRRH YG+GK KP +KG  GAELV+GL ++EG+YKLVKTRFSAFF+
Sbjct: 59  VVREHDPLGRDVELFRRHLYGDGKPKPTSKGCVGAELVDGLVIQEGDYKLVKTRFSAFFN 118

Query: 95  TNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPKIHQDNI 154
           TNLHS LQG+GIT+LVV GVQTPNCIRQTVFDAV+LDY  +T++ DATAAATP IH  NI
Sbjct: 119 TNLHSYLQGIGITNLVVIGVQTPNCIRQTVFDAVALDYQRVTVIIDATAAATPDIHIANI 178

Query: 155 TDIKNVGVVASKVDEWGHS 174
            D+KNVGV    ++EW  S
Sbjct: 179 FDMKNVGVATPTLEEWCQS 197

[Close]

BLAST of Cp4.1LG12g08380 vs. TrEMBL
Match: F6HYD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04140 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.9e-49
Identity = 99/146 (67.81%), Postives = 118/146 (80.82%), Query Frame = 1


Query: 30  VIDMQVVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGEYKLVKTRF 89
           ++ + VVREHDP+GRDVE FRR++YG GKL PA KGS GAEL++GL +KEG+YKLVKTRF
Sbjct: 42  ILVVWVVREHDPQGRDVEVFRRNFYGPGKLSPATKGSEGAELIDGLAIKEGDYKLVKTRF 101

Query: 90  SAFFDTNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPKI 149
           SAFF T+LHSLLQ  GI  +VV GVQTPNCIRQT FDAVSLDY S+T++ DATAAATP I
Sbjct: 102 SAFFATHLHSLLQSNGINSVVVVGVQTPNCIRQTAFDAVSLDYQSVTVIVDATAAATPDI 161

Query: 150 HQDNITDIKNVGVVASKVDEWGHSDA 176
           H  NI D+KNVGV    + +W  S+A
Sbjct: 162 HLANILDMKNVGVATPTLQKWCQSNA 187

[Close]

BLAST of Cp4.1LG12g08380 vs. TrEMBL
Match: A0A0V0HFN2_SOLCH (Putative nicotinamidase-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.7e-49
Identity = 98/139 (70.50%), Postives = 116/139 (83.45%), Query Frame = 1


Query: 35  VVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFD 94
           VVREHDP GRDVE FRRH YG+GK KP +KG  GAELV+GL ++EG+YKLVKTRFSAFF+
Sbjct: 59  VVREHDPLGRDVELFRRHLYGDGKPKPTSKGCVGAELVDGLLIQEGDYKLVKTRFSAFFN 118

Query: 95  TNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPKIHQDNI 154
           TNLHS LQG+G+T+LVV GVQTPNCIRQTVFDAV+LDY  +T++ DATAAATP IH  N+
Sbjct: 119 TNLHSYLQGIGVTNLVVIGVQTPNCIRQTVFDAVALDYQRVTVIIDATAAATPDIHIANV 178

Query: 155 TDIKNVGVVASKVDEWGHS 174
            D+KNVGV    ++EW  S
Sbjct: 179 FDMKNVGVETPTLEEWCQS 197

[Close]

BLAST of Cp4.1LG12g08380 vs. TAIR10
Match: AT3G16190.1 (AT3G16190.1 Isochorismatase family protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-46
Identity = 90/142 (63.38%), Postives = 114/142 (80.28%), Query Frame = 1


Query: 30  VIDMQVVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEM-KEGEYKLVKTR 89
           ++ + VVREHD +GRDVE FRRH Y + K+ P  KG+ GAELV+GL + +E +YK+VKTR
Sbjct: 50  ILVIWVVREHDRQGRDVELFRRHNYSSEKVGPVIKGTVGAELVDGLMINEEDDYKIVKTR 109

Query: 90  FSAFFDTNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPK 149
           FSAFF TNLHS LQ  G+T LV+AGVQTPNCIRQTVFDAV+LDY ++T+++DATAAATP+
Sbjct: 110 FSAFFSTNLHSFLQTSGVTKLVIAGVQTPNCIRQTVFDAVALDYPNVTVITDATAAATPE 169

Query: 150 IHQDNITDIKNVGVVASKVDEW 171
           IH  NI D+KN+GV    + EW
Sbjct: 170 IHTANILDMKNIGVKTPTLHEW 191

[Close]

BLAST of Cp4.1LG12g08380 vs. NCBI nr
Match: gi|449448020|ref|XP_004141764.1| (PREDICTED: probable inactive nicotinamidase At3g16190 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 4.2e-60
Identity = 116/137 (84.67%), Postives = 125/137 (91.24%), Query Frame = 1


Query: 35  VVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFD 94
           VVREHD EGRDVERFRRHYYGNGK  P+ KGS+GAELVEGLE+KEGEYKLVKTRFSAFF+
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPSVKGSKGAELVEGLEIKEGEYKLVKTRFSAFFN 114

Query: 95  TNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPKIHQDNI 154
           TNLHSLLQG GIT LVV GVQTPNCIRQTVFDAV+LDYHSITLL DATAAATPKIH DN 
Sbjct: 115 TNLHSLLQGAGITDLVVCGVQTPNCIRQTVFDAVALDYHSITLLYDATAAATPKIHHDNT 174

Query: 155 TDIKNVGVVASKVDEWG 172
           TD++NVGVV  +VD+WG
Sbjct: 175 TDMENVGVVVKRVDQWG 191

[Close]

BLAST of Cp4.1LG12g08380 vs. NCBI nr
Match: gi|659131118|ref|XP_008465520.1| (PREDICTED: uncharacterized protein LOC103503139 [Cucumis melo])

HSP 1 Score: 239.6 bits (610), Expect = 4.2e-60
Identity = 127/195 (65.13%), Postives = 137/195 (70.26%), Query Frame = 1


Query: 19  MADQWNHTALLVI--------------------------------------DMQVVREHD 78
           MADQW  TALLVI                                       + VVREHD
Sbjct: 1   MADQWKRTALLVIDMQRDFIDEHSVFAVPGASTIIPSVSTAVEIARNRGLFIIWVVREHD 60

Query: 79  PEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFDTNLHSL 138
            EGRDVERFRRHYYGNGK  P  KGS+GAELV+GLE+KEGEYKLVKTRFSAFF+TNL SL
Sbjct: 61  GEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFNTNLRSL 120

Query: 139 LQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPKIHQDNITDIKNV 176
           LQG GIT LVV GVQTPNCIRQTVFDAV+LDYHSITLL DATAAATPK+H DNITD+ NV
Sbjct: 121 LQGAGITDLVVCGVQTPNCIRQTVFDAVALDYHSITLLYDATAAATPKVHHDNITDMVNV 180

[Close]

BLAST of Cp4.1LG12g08380 vs. NCBI nr
Match: gi|698524845|ref|XP_009759232.1| (PREDICTED: uncharacterized protein LOC104211802 isoform X3 [Nicotiana sylvestris])

HSP 1 Score: 227.3 bits (578), Expect = 2.1e-56
Identity = 111/152 (73.03%), Postives = 129/152 (84.87%), Query Frame = 1


Query: 22  QWNHTALLVIDMQVVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGE 81
           +WN TALLVIDMQVVREHDP GRDVE FRRH YG+GK KP +KGS GAELV+GL ++E +
Sbjct: 8   KWNKTALLVIDMQVVREHDPLGRDVELFRRHLYGDGKPKPTSKGSVGAELVDGLVIQEDD 67

Query: 82  YKLVKTRFSAFFDTNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDA 141
           YKLVKTRFSAFF+TNLHS LQG+GIT+LV+ GVQTPNCIRQTVFDAV+LDY  +T++ DA
Sbjct: 68  YKLVKTRFSAFFNTNLHSYLQGIGITNLVIIGVQTPNCIRQTVFDAVALDYERVTVIIDA 127

Query: 142 TAAATPKIHQDNITDIKNVGVVASKVDEWGHS 174
           TAAATP IH  NI D+KNVGVV   ++EW  S
Sbjct: 128 TAAATPDIHIANIIDMKNVGVVTPTLEEWCQS 159

[Close]

BLAST of Cp4.1LG12g08380 vs. NCBI nr
Match: gi|697147764|ref|XP_009628049.1| (PREDICTED: uncharacterized protein LOC104118502 isoform X3 [Nicotiana tomentosiformis])

HSP 1 Score: 222.2 bits (565), Expect = 6.9e-55
Identity = 109/152 (71.71%), Postives = 127/152 (83.55%), Query Frame = 1


Query: 22  QWNHTALLVIDMQVVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGE 81
           +WN TALLVIDMQVVREHD  GRDVE FRRH YG+GK KP +KGS GAELV+GL ++E +
Sbjct: 8   KWNKTALLVIDMQVVREHDQLGRDVELFRRHLYGDGKPKPTSKGSVGAELVDGLVIEEDD 67

Query: 82  YKLVKTRFSAFFDTNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDA 141
           YKLVKTRFSAFF+TNLHS LQG+GIT+LV+ GVQTPNCIRQTVFDAV+LDY  +T++ DA
Sbjct: 68  YKLVKTRFSAFFNTNLHSYLQGIGITNLVIIGVQTPNCIRQTVFDAVALDYERVTVIIDA 127

Query: 142 TAAATPKIHQDNITDIKNVGVVASKVDEWGHS 174
           TAAATP IH  NI D+KNVGV    ++EW  S
Sbjct: 128 TAAATPDIHIANIFDMKNVGVATPTLEEWCRS 159

[Close]

BLAST of Cp4.1LG12g08380 vs. NCBI nr
Match: gi|702483912|ref|XP_010033854.1| (PREDICTED: uncharacterized protein LOC104423090 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 208.4 bits (529), Expect = 1.0e-50
Identity = 99/139 (71.22%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 35  VVREHDPEGRDVERFRRHYYGNGKLKPAAKGSRGAELVEGLEMKEGEYKLVKTRFSAFFD 94
           VVREHDP+GRDVE FRRH+Y +GKL P +KGS GAELV+GLE++EG+YKLVKTRFSAFF 
Sbjct: 55  VVREHDPQGRDVELFRRHFYSSGKLGPTSKGSAGAELVDGLEIREGDYKLVKTRFSAFFA 114

Query: 95  TNLHSLLQGVGITHLVVAGVQTPNCIRQTVFDAVSLDYHSITLLSDATAAATPKIHQDNI 154
           T+LHS+LQG GI  LV+AGVQTPNCIRQTVFDAV+LDY S+T+L DATAAATP++H  NI
Sbjct: 115 THLHSVLQGAGIDSLVIAGVQTPNCIRQTVFDAVALDYRSVTVLVDATAAATPEVHHANI 174

Query: 155 TDIKNVGVVASKVDEWGHS 174
            D+KN+GV    + EW  S
Sbjct: 175 FDMKNIGVSTPTLQEWRQS 193

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g08380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NIC4_ARATH	2.2e-45	63.38	Probable inactive nicotinamidase At3g16190 OS=Arabidopsis thaliana GN=At3g16190 ...	[more]
RUTB_PANAM	2.3e-10	41.30	Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Pantoea ananatis (str...	[more]
RUTB_CAUST	2.3e-10	41.30	Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Caulobacter segnis (s...	[more]
RUTB_ECOLI	3.0e-10	42.39	Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli (str...	[more]
RUTB_ECOBW	3.0e-10	42.39	Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli (str...	[more]

BLAST of Cp4.1LG12g08380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7E5_CUCSA	2.9e-60	84.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447030 PE=4 SV=1	[more]
A0A059AI19_EUCGR	7.2e-51	71.22	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02954 PE=4 SV=1	[more]
K4BMK3_SOLLC	1.8e-49	71.94	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
F6HYD6_VITVI	3.9e-49	67.81	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04140 PE=4 SV=...	[more]
A0A0V0HFN2_SOLCH	6.7e-49	70.50	Putative nicotinamidase-like OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Cp4.1LG12g08380 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16190.1	1.3e-46	63.38	Isochorismatase family protein	[more]

BLAST of Cp4.1LG12g08380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448020\|ref\|XP_004141764.1\|	4.2e-60	84.67	PREDICTED: probable inactive nicotinamidase At3g16190 [Cucumis sativus]	[more]
gi\|659131118\|ref\|XP_008465520.1\|	4.2e-60	65.13	PREDICTED: uncharacterized protein LOC103503139 [Cucumis melo]	[more]
gi\|698524845\|ref\|XP_009759232.1\|	2.1e-56	73.03	PREDICTED: uncharacterized protein LOC104211802 isoform X3 [Nicotiana sylvestris...	[more]
gi\|697147764\|ref\|XP_009628049.1\|	6.9e-55	71.71	PREDICTED: uncharacterized protein LOC104118502 isoform X3 [Nicotiana tomentosif...	[more]
gi\|702483912\|ref\|XP_010033854.1\|	1.0e-50	71.22	PREDICTED: uncharacterized protein LOC104423090 isoform X1 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR000868	Isochorismatase-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g08380.1	Cp4.1LG12g08380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000868	Isochorismatase-like	GENE3D	G3DSA:3.40.50.850		coord: 37..170 score: 4.9
IPR000868	Isochorismatase-like	PFAM	PF00857	Isochorismatase	coord: 52..164 score: 5.1
IPR000868	Isochorismatase-like	unknown	SSF52499	Isochorismatase-like hydrolases	coord: 22..170 score: 1.24
None	No IPR available	PANTHER	PTHR11080	PYRAZINAMIDASE/NICOTINAMIDASE	coord: 35..170 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g08380	Cucsa.359280	Cucumber (Gy14) v1	cgycpeB0936
Cp4.1LG12g08380	CmaCh17G007910	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g08380	CmaCh08G007140	Cucurbita maxima (Rimu)	cmacpeB903
Cp4.1LG12g08380	CmoCh08G006770	Cucurbita moschata (Rifu)	cmocpeB839
Cp4.1LG12g08380	CmoCh17G007580	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g08380	Cla015457	Watermelon (97103) v1	cpewmB131
Cp4.1LG12g08380	Csa7G447030	Cucumber (Chinese Long) v2	cpecuB161
Cp4.1LG12g08380	ClCG09G001890	Watermelon (Charleston Gray)	cpewcgB126
Cp4.1LG12g08380	CSPI07G21550	Wild cucumber (PI 183967)	cpecpiB163
Cp4.1LG12g08380	Lsi02G028090	Bottle gourd (USVL1VR-Ls)	cpelsiB113
Cp4.1LG12g08380	CsaV3_7G033450	Cucumber (Chinese Long) v3	cpecucB0188
Cp4.1LG12g08380	Bhi09G000144	Wax gourd	cpewgoB0208
Cp4.1LG12g08380	CsGy7G019880	Cucumber (Gy14) v2	cgybcpeB906
Cp4.1LG12g08380	Carg09514	Silver-seed gourd	carcpeB1424
Cp4.1LG12g08380	Carg18782	Silver-seed gourd	carcpeB1049

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG12g08380	Cp4.1LG17g05480	Cucurbita pepo (Zucchini)	cpecpeB157

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g08380	Cucumber (Gy14) v2	cgybcpeB306
Cp4.1LG12g08380	Melon (DHL92) v3.6.1	cpemedB150
Cp4.1LG12g08380	Melon (DHL92) v3.6.1	cpemedB159
Cp4.1LG12g08380	Silver-seed gourd	carcpeB0182
Cp4.1LG12g08380	Silver-seed gourd	carcpeB0171
Cp4.1LG12g08380	Silver-seed gourd	carcpeB0280
Cp4.1LG12g08380	Cucumber (Chinese Long) v3	cpecucB0156
Cp4.1LG12g08380	Wax gourd	cpewgoB0190
Cp4.1LG12g08380	Cucurbita pepo (Zucchini)	cpecpeB178
Cp4.1LG12g08380	Cucurbita pepo (Zucchini)	cpecpeB181
Cp4.1LG12g08380	Cucurbita pepo (Zucchini)	cpecpeB182
Cp4.1LG12g08380	Cucurbita pepo (Zucchini)	cpecpeB187
Cp4.1LG12g08380	Cucurbita maxima (Rimu)	cmacpeB257
Cp4.1LG12g08380	Cucurbita maxima (Rimu)	cmacpeB466
Cp4.1LG12g08380	Cucurbita moschata (Rifu)	cmocpeB221
Cp4.1LG12g08380	Cucurbita moschata (Rifu)	cmocpeB426
Cp4.1LG12g08380	Bottle gourd (USVL1VR-Ls)	cpelsiB127
Cp4.1LG12g08380	Watermelon (Charleston Gray)	cpewcgB148
Cp4.1LG12g08380	Watermelon (97103) v1	cpewmB145
Cp4.1LG12g08380	Melon (DHL92) v3.5.1	cpemeB123
Cp4.1LG12g08380	Melon (DHL92) v3.5.1	cpemeB132