Cp4.1LG12g08370 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g08370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCytochrome c oxidase assembly protein COX19, putative
LocationCp4.1LG12 : 6461385 .. 6465169 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGGCCTTGCAAAAGCTCCGGTGTCGGCCCAGTTATTTATCTGGGCCAAATTAGCAAATTGGGACTGGGCTGGACTTTTTCAGTTGGGCTTTGCCAAATCCCCGGCGTTGGCCCAGGTATTAATCTGGGCCGAATTCGCAAATTGTGGAATTGGCCTGGACTTTTTCATGTCATGCAGCTACAGAATTTCGTCTCTGATTCTTTTCCGGCTGGCTTCAGAGTAGTTTATCTCGATCCACTAGCATATCACCGGCGACGGTCAATCGATCTTGTTCGCGACTTGGCGGTCCGTATGATTCAAATGAAAATTTCTATATCGAGATTTCAGGAATTTCCACAATGAGTGCAGGTACTCTACGAATCCCGATGGTTACAAACATAAGCATGTTTTCCTTTTTCTTTTCTTTTCTTTTTTGGTTGAACTTATGTTAATTGCGAGGAGAGGATTCGAATGGTTGAGGGAGTAGGATCTCGATTCTTGCTGTTAAATTCATAAGGTTCGGGTAAGTGACCGATTGTTCAAAGAGCTCGTGTTTTAGCCTTTTTTGGACCTCAAACTCGTTTGGAAAATGAAAAGATTGGCAGAATTTCACTTCTAAATAAGGAGTTTCTATCAATTGATTGAATCCTATGAATGGTTCTTCAGCAATTTGTGTGATGGGGAGCTTGCTATTGCATCCTTTTAATTCCCGTGTGGTTCTACCTATCAGATGGGTGGAACTTTGAACATTGAAACTTCGAAGTTAGGTGGGTTGATGGTGGTGTTTTTACATGTCTATTAATAGAGCATATTCTTCAATGTAGAATGACTTGAATTACTTGATGACTATAGAGAATGCATTGAAAAAGAAGATGCATGTTCTTTCGCGTACCACCAATCCTGTAGAGAGTTGTCAGTTTCTTAAACATGTTCACCAGATTTTTAAGATGCTTATAAATGACTGGTAGCTATCATTCTTAATGGGGCTCTGAATAATTTCGATTTAGTTCTTGTTTCTTAGTATAGCTTTGTATCTCAGGCAGTGATTGCCATCATTTGCATCCAATATTTTACTGTAAGTTTTATGATCTGCAAATGAACAAAGAGCTGGTTAAAATTGATTCTTACGTGCACATTACGTTTAGCTTTGTGAGTGATATGCATATTACTTGGAACGAGTGAACCCGGAAACACTAGTTAGCTTATCTTTGCGATATTCTTTCTTCTTTGAGTTTTAATGGATAGAATGGAGGTTGTCAATTAAAATGTGGTTTGGATTGTGTTTTACAATATATGAATCCTGAGAACCATTTCATACACTGAAAATGGGTAGACACTTTTGTTGAGGATATCAAATGACACTTTTGTTGAGGATTATTAAGAGTAGTCCCACATTGGCTAATTAAGAGGAAGATCAAATGACACTTTTGTTGAGGATATCATGAGTTTATAAGTAAATAACACTATCTCCATTGGTACGAGACCTTTTGGGGAAACCAAAAGTGCTCAAAGTGGACAATATCGTACCATTGTGAAGATTTGTGATTCCTAACAACTGAATTATTCTATATTACCTAAATTTGTGTTCGGGGGAGGGACTGTACCAAGAAAAGTCATAATTAAAAGCTTAGAATGCTTTGGTGGTGCAAAAGAGGAGAACCGGTTTATACTTAAAAAGAACGTCACATAGAATGGTATGGTTTCTTTTTCAGCTAATTTGATTTCGTGAGATCTTTAGTGATCCTTTGCAGGTGGTTCATTTGGAGGGAATAGAGGATTGAGACCCGTACCCCCAGAGAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCAAGTATTTCCTTTTTGGAATATTTTTTCAAGGAATCTTTGTGTTCTTTTCTTGTTTCATGATGCATGAGCTTTATTGCAGGAGAAGAAAGAATACCTCAATTGTCTTAAAACCTCTGGTCACCAATCCGAAAAATGCAGGCACTTATCGAAAAAATACCTTGAATGTCGTATGGAAAAGTAAGATTCTTGACTTTTTATATCATCTTTTGTATAACAAAAGTAGCTTTGCTTTCTTATTTAAGATTCATAAACTTTTTGTTTGCGAGAACCTGGGTTGTTTATTATAATCGTATTAGTCATCCTTCATGGCGGTGCATGGTCAAGTATTTAAAAGTTTTTATCTTTTCAAAATAAATTATGCTAATAGTCCCTAGTAAAGGAATTAGGGTGGCCATCATAAACACAAAAATCAAGCTTTTCAGAGGCCTGCAGTTTCTAGAGCGTCAGCTGACCAAATTCCTAACTAAAAATGCCAACTTTCCCTTCTTTCTCTAGCTCGGTTAGTACCTACTAACTTCATATGCCCTGAAAACTTGGAATGGACCTTTCCTTTCTTTTCTAACCAATTCTACACCCTCCCTCGCTTTATAGTCCCTCAGGGTAAGTTAAACGGATTTAGGAAATTGCAAATGCTTTAGAACCAGTTGAAGTAATATTATGCCCATTGATTTCGGTTTATGATTTCAGTTTGAACTTGGGATACATTTCTTTTATTAAGCAAATGGTTTGGAGACAATTTCTTTTATGATTTCGGTTTGAACTTAGGATACATTTGTCAAGTGCAAATGAGAAGGTAACTGGATTGGAATCAAGCTAATTTGACCTTTACTTTCTCGTCTATGATGGCTCTCTTCTTCTTCTTTGAGTTACAGTTCCACTATGTTTCATTTCTTTTCCTACACTGCCACCTGAATTATTTTGAGTAACAATAATTGATTCTCAGAAAATTTGCACCGCTTTGTTTCGACTCCTAATCAAATGCTATGNTTGACCTTTACTTTCTCGTCTATGATGGCTCTCTTCTTCTTCTTTGAGTTACAGTTCCACTATGTTTCATTTCTTTTCCTACACTGCCACCTGAATTATTTTGAGTAACAATAATTGATTCTCAGAAAATTTGCACCGCTTTGTTTCGACTCCTAATCAAATGCTATGCAAATTGGTGGATTTGTTTCAACTTTATTTTAAGTATTTCACGTCATTTCATTGGATTCTTGCAGGAATTTAATGGCAAAACAAGACATGACGGAACTGGGATTTGAGACTTCGAGCCAGGCCAGTCTCTCTGGTGATAAATTGGAATAAGTCTAAAATTGTTCGGCCACAGAACCGTTTACTCACTTGTTCAAGTTATATCATCAACCAACCCTTCTATAACACGCTTTGAAGGAAGGAAATGTGATTTTTCTTAATGTATTGTCCTTCATAACAGTGCCTCTTTAACTCCTTGCGTACATCTCATATGTTCTTATCAATTTTTCAATATTGAGAGTAACTTTTCAACAGTTTTTTCAATTTGATTAGAGAACAAAGTTACAGGTGGTTGCGTTTCAACTATATTTGGCGCATTCCATGAGCAAAAACAGTGACTTGAATTACAAATAAATATTGATCTTCAAAACAATGGATTAGGAAAACTAAATGTTACCTCCTAACTGTCTTAAGCCTCCAAAGTGACAATATCATCAGATTCGTCTACCATCATCTCATTTCTGAAAAGGAGTTTCAAGTAGGGAAGAACCTTAGGTAGTACTAACAAATCTGCAACATTAACACTCATCAAGTCAAATGCAATGCAGGTTTTATGCATGTGTCTCTCTTCGATCACTGGAATTTTAGGGTATCTTTGACTGAAGTGTGTAAGGACAATTCGATACGCTCCGGCCGAGTTCCCTATGTCTACAGCTTCCGAAGTTGTGCTGTGGTTTTTAGCCACGGCCTCATCCATCAAGCTGTCCTCAAAAG

mRNA sequence

TTGGGCCTTGCAAAAGCTCCGGTGTCGGCCCAGTTATTTATCTGGGCCAAATTAGCAAATTGGGACTGGGCTGGACTTTTTCAGTTGGGCTTTGCCAAATCCCCGGCGTTGGCCCAGAGTAGTTTATCTCGATCCACTAGCATATCACCGGCGACGGTCAATCGATCTTGTTCGCGACTTGGCGGTCCGTATGATTCAAATGAAAATTTCTATATCGAGATTTCAGGAATTTCCACAATGAGTGCAGGTGGTTCATTTGGAGGGAATAGAGGATTGAGACCCGTACCCCCAGAGAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCAAGAGAAGAAAGAATACCTCAATTGTCTTAAAACCTCTGGTCACCAATCCGAAAAATGCAGGCACTTATCGAAAAAATACCTTGAATGTCGTATGGAAAAGAATTTAATGGCAAAACAAGACATGACGGAACTGGGATTTGAGACTTCGAGCCAGGCCAGTCTCTCTGGTGATAAATTGGAATAAGTCTAAAATTGTTCGGCCACAGAACCGTTTACTCACTTGTTCAAGTTATATCATCAACCAACCCTTCTATAACACGCTTTGAAGGAAGGAAATGTGATTTTTCTTAATGTATTGTCCTTCATAACAGTGCCTCTTTAACTCCTTGCGTACATCTCATATGTTCTTATCAATTTTTCAATATTGAGAGTAACTTTTCAACAGTTTTTTCAATTTGATTAGAGAACAAAGTTACAGGTGGTTGCGTTTCAACTATATTTGGCGCATTCCATGAGCAAAAACAGTGACTTGAATTACAAATAAATATTGATCTTCAAAACAATGGATTAGGAAAACTAAATGTTACCTCCTAACTGTCTTAAGCCTCCAAAGTGACAATATCATCAGATTCGTCTACCATCATCTCATTTCTGAAAAGGAGTTTCAAGTAGGGAAGAACCTTAGGTAGTACTAACAAATCTGCAACATTAACACTCATCAAGTCAAATGCAATGCAGGTTTTATGCATGTGTCTCTCTTCGATCACTGGAATTTTAGGGTATCTTTGACTGAAGTGTGTAAGGACAATTCGATACGCTCCGGCCGAGTTCCCTATGTCTACAGCTTCCGAAGTTGTGCTGTGGTTTTTAGCCACGGCCTCATCCATCAAGCTGTCCTCAAAAG

Coding sequence (CDS)

TTGGGCCTTGCAAAAGCTCCGGTGTCGGCCCAGTTATTTATCTGGGCCAAATTAGCAAATTGGGACTGGGCTGGACTTTTTCAGTTGGGCTTTGCCAAATCCCCGGCGTTGGCCCAGAGTAGTTTATCTCGATCCACTAGCATATCACCGGCGACGGTCAATCGATCTTGTTCGCGACTTGGCGGTCCGTATGATTCAAATGAAAATTTCTATATCGAGATTTCAGGAATTTCCACAATGAGTGCAGGTGGTTCATTTGGAGGGAATAGAGGATTGAGACCCGTACCCCCAGAGAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCAAGAGAAGAAAGAATACCTCAATTGTCTTAAAACCTCTGGTCACCAATCCGAAAAATGCAGGCACTTATCGAAAAAATACCTTGAATGTCGTATGGAAAAGAATTTAATGGCAAAACAAGACATGACGGAACTGGGATTTGAGACTTCGAGCCAGGCCAGTCTCTCTGGTGATAAATTGGAATAA

Protein sequence

LGLAKAPVSAQLFIWAKLANWDWAGLFQLGFAKSPALAQSSLSRSTSISPATVNRSCSRLGGPYDSNENFYIEISGISTMSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYLECRMEKNLMAKQDMTELGFETSSQASLSGDKLE
Homology
[Close]
BLAST of Cp4.1LG12g08370 vs. Swiss-Prot
Match: COX19_SCHPO (Cytochrome c oxidase assembly protein cox19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox19 PE=3 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-14
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 1 

Query: 85  SFGGNRGLRPV----PPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYLE 144
           SFG   G  P+    PPE+G FPLDH   C    K+YL C+K      E+CR L+KKYL+
Sbjct: 2   SFGAAGGSLPMTTREPPERGSFPLDHFGECTHVMKQYLECIKVKRENQEECRLLAKKYLQ 61

Query: 145 CRMEKNLMAKQDMTELGF---ETSSQASLS 168
           CRM+  L  K DM  LGF   E ++  SLS
Sbjct: 62  CRMDTGLFGKDDMKNLGFHGDENATSTSLS 91

[Close]
BLAST of Cp4.1LG12g08370 vs. Swiss-Prot
Match: COX19_DICDI (Cytochrome c oxidase assembly protein COX19 OS=Dictyostelium discoideum GN=cox19 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1 

Query: 93  RPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYLECRMEKNLMAKQD 152
           +P PP+KG FPLDH   C +    Y+NCL  +   S  C   SK+YL+CRM+ NLMAK+D
Sbjct: 11  KPTPPDKGSFPLDHDSECSKPMLAYVNCLSENNGLSRFCMEFSKEYLKCRMDNNLMAKED 70

Query: 153 MTELGFETSSQASL 167
           M   GFE   +A +
Sbjct: 71  MDNFGFEEVKKAKI 84

[Close]
BLAST of Cp4.1LG12g08370 vs. Swiss-Prot
Match: COX19_BOVIN (Cytochrome c oxidase assembly protein COX19 OS=Bos taurus GN=COX19 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MS   +FG ++  +P PP+KG FPLDH   C   K++++ CL+ +  ++  CR+ SK+YL
Sbjct: 1   MSTAMNFG-SKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDNNFENALCRNESKEYL 60

Query: 140 ECRMEKNLMAKQDMTELGF 159
           ECRME+ LMA++ + +LGF
Sbjct: 61  ECRMERQLMAQEPLEKLGF 78

[Close]
BLAST of Cp4.1LG12g08370 vs. Swiss-Prot
Match: COX19_USTMA (Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=COX19 PE=3 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-13
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1 

Query: 96  PPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYLECRMEKNLMAKQDMTE 155
           PPE+G FPLDH   C    +EY+NC+K + + + KCRHLS+ YL+CRM+K LM + +M  
Sbjct: 16  PPERGSFPLDHDGECKSVMQEYMNCIKYNRNDNGKCRHLSRAYLQCRMDKGLMEQDNMDN 75

Query: 156 LGFE 160
           LGF+
Sbjct: 76  LGFK 79

[Close]
BLAST of Cp4.1LG12g08370 vs. Swiss-Prot
Match: COX19_MAGOY (Cytochrome c oxidase assembly protein COX19 OS=Magnaporthe oryzae (strain Y34) GN=COX19 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-13
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 1 

Query: 80  MSA-GGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLK-TSGHQSEKCRHLSKK 139
           MSA GG  GG    +P+PP++G FPLDH   C      YL C+K   G    +CR  +K 
Sbjct: 1   MSAFGGPGGGQINQKPIPPQRGSFPLDHDGECKHVMTSYLACMKKVRGVNDNECREFAKS 60

Query: 140 YLECRMEKNLMAKQDMTELGFETSSQASLSGD 170
           YL CRM+ NLMA+ +   LGF+    +S  GD
Sbjct: 61  YLACRMDHNLMARDEFKNLGFQDVKDSSNKGD 92

[Close]
BLAST of Cp4.1LG12g08370 vs. TrEMBL
Match: A0A0V0H7V2_SOLCH (Putative cytochrome c oxidase assembly protein COX19-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-36
Identity = 75/94 (79.79%), Postives = 83/94 (88.30%), Query Frame = 1 

Query: 79  TMSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKY 138
           TMSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCD EKKEYLNCLK+SGH+S+ CRHLSKKY
Sbjct: 42  TMSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKSSGHKSDNCRHLSKKY 101

Query: 139 LECRMEKNLMAKQDMTELGFETSSQASLSGDKLE 173
           L CRMEKNLMAKQDM+ELGF  +  A  S ++ E
Sbjct: 102 LVCRMEKNLMAKQDMSELGFGKNYDAETSSEETE 135

[Close]
BLAST of Cp4.1LG12g08370 vs. TrEMBL
Match: M1CIA6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026453 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.8e-36
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCD EKKEYLNCLK+SGH+S+ CRHLSKKYL
Sbjct: 1   MSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKSSGHKSDNCRHLSKKYL 60

Query: 140 ECRMEKNLMAKQDMTELGFETSSQASLSGDKLE 173
            CRMEKNLMAKQDM+ELGF  +  A  S +++E
Sbjct: 61  VCRMEKNLMAKQDMSELGFGKNYDAETSSEEME 93

[Close]
BLAST of Cp4.1LG12g08370 vs. TrEMBL
Match: K4DFC6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.8e-36
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCD EKKEYLNCLK+SGH+S+ CRHLSKKYL
Sbjct: 1   MSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKSSGHKSDNCRHLSKKYL 60

Query: 140 ECRMEKNLMAKQDMTELGFETSSQASLSGDKLE 173
            CRMEKNLMAKQDM+ELGF  +  A  S +++E
Sbjct: 61  VCRMEKNLMAKQDMSELGFGKNYDAETSSEEME 93

[Close]
BLAST of Cp4.1LG12g08370 vs. TrEMBL
Match: M5WRR5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013878mg PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.4e-36
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MSAGG+FGGNRGL PVPPEKGVFPLDHMHLCD +KKEYL+CLKTSGHQSEKCR  SKKYL
Sbjct: 1   MSAGGAFGGNRGLSPVPPEKGVFPLDHMHLCDLDKKEYLSCLKTSGHQSEKCRLFSKKYL 60

Query: 140 ECRMEKNLMAKQDMTELGFETSSQASLSGDKL 172
           ECRMEKNLMAKQDM+ELGF   S    SG+K+
Sbjct: 61  ECRMEKNLMAKQDMSELGFVKESNLEASGEKV 92

[Close]
BLAST of Cp4.1LG12g08370 vs. TrEMBL
Match: M0ZRG9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402002538 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.4e-36
Identity = 73/91 (80.22%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCD EKKEYLNCLK++GH+SE+CRHLSKKYL
Sbjct: 1   MSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDVEKKEYLNCLKSAGHKSEECRHLSKKYL 60

Query: 140 ECRMEKNLMAKQDMTELGFETSSQASLSGDK 171
           ECRMEKNLMAKQDM+ELGF  +  A    ++
Sbjct: 61  ECRMEKNLMAKQDMSELGFGKNVDAGTKSEE 91

[Close]
BLAST of Cp4.1LG12g08370 vs. TAIR10
Match: AT1G69750.1 (AT1G69750.1 cytochrome c oxidase 19-2)

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-35
Identity = 66/91 (72.53%), Postives = 76/91 (83.52%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MS GG+FGGNRGLRP+PPEKG+FPLDH+H CD EKKEYL CLK+S H+SE+CRHLSKKYL
Sbjct: 1   MSTGGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYL 60

Query: 140 ECRMEKNLMAKQDMTELGFETSSQASLSGDK 171
           +CRM KNLMAKQDM ELGF    +   + DK
Sbjct: 61  QCRMAKNLMAKQDMAELGFSGVKELDSTEDK 91

[Close]
BLAST of Cp4.1LG12g08370 vs. TAIR10
Match: AT1G66590.2 (AT1G66590.2 cytochrome c oxidase 19-1)

HSP 1 Score: 144.1 bits (362), Expect = 8.3e-35
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1 

Query: 82  AGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYLEC 141
           AGG+FGGNRGLRP+PPEKG+FPLDH+H CD EKKEYL CLK+S H+SE+CRHLSKKYL+C
Sbjct: 18  AGGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYLQC 77

Query: 142 RMEKNLMAKQDMTELGFETSSQASLSGDK 171
           RM KNLMAKQDM ELGF    +   + DK
Sbjct: 78  RMAKNLMAKQDMAELGFSGVKELDSTEDK 106

[Close]
BLAST of Cp4.1LG12g08370 vs. NCBI nr
Match: gi|659124474|ref|XP_008462179.1| (PREDICTED: cytochrome c oxidase assembly protein COX19-like [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 1.0e-42
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCD EKKEYLNCLKTSGH+SEKCRHLSKKYL
Sbjct: 1   MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHKSEKCRHLSKKYL 60

Query: 140 ECRMEKNLMAKQDMTELGFETSSQASLSGDKLE 173
           ECRMEKNLMAKQDMTELGF + SQA+LSGDKLE
Sbjct: 61  ECRMEKNLMAKQDMTELGFGSVSQANLSGDKLE 93

[Close]
BLAST of Cp4.1LG12g08370 vs. NCBI nr
Match: gi|449448014|ref|XP_004141761.1| (PREDICTED: cytochrome c oxidase assembly protein COX19-like [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 3.0e-42
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCD EKKEYLNCLKTSGH+SEKCRHLSK+YL
Sbjct: 1   MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHKSEKCRHLSKRYL 60

Query: 140 ECRMEKNLMAKQDMTELGFETSSQASLSGDKLE 173
           ECRMEKNLMAKQDMTELGF   SQA+LSGDKLE
Sbjct: 61  ECRMEKNLMAKQDMTELGFGNLSQANLSGDKLE 93

[Close]
BLAST of Cp4.1LG12g08370 vs. NCBI nr
Match: gi|460413979|ref|XP_004252352.1| (PREDICTED: cytochrome c oxidase assembly protein COX19-like isoform X1 [Solanum lycopersicum])

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 1 

Query: 79  TMSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKY 138
           TMSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCD EKKEYLNCLK+SGH+S+ CRHLSKKY
Sbjct: 33  TMSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKSSGHKSDNCRHLSKKY 92

Query: 139 LECRMEKNLMAKQDMTELGFETSSQASLSGDKLE 173
           L CRMEKNLMAKQDM+ELGF  +  A  S +++E
Sbjct: 93  LVCRMEKNLMAKQDMSELGFGKNYDAETSSEEME 126

[Close]
BLAST of Cp4.1LG12g08370 vs. NCBI nr
Match: gi|697126603|ref|XP_009617334.1| (PREDICTED: cytochrome c oxidase assembly protein COX19-like [Nicotiana tomentosiformis])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 75/92 (81.52%), Postives = 83/92 (90.22%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCD EKKEYLNCLK+SGH+S+ CRHLSKKYL
Sbjct: 1   MSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKSSGHKSDNCRHLSKKYL 60

Query: 140 ECRMEKNLMAKQDMTELGFETSSQASLSGDKL 172
           ECRMEKNLMAKQDM+ELGF  +  A  S D++
Sbjct: 61  ECRMEKNLMAKQDMSELGFGKNYDAEDSSDEM 92

[Close]
BLAST of Cp4.1LG12g08370 vs. NCBI nr
Match: gi|658036328|ref|XP_008353708.1| (PREDICTED: cytochrome c oxidase assembly protein cox19, mitochondrial-like isoform X2 [Malus domestica])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 1 

Query: 80  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDQEKKEYLNCLKTSGHQSEKCRHLSKKYL 139
           MSAGG+FGGNRGL PVPPEKGVFPLDHMHLCD EKKEYL+CLKTSGHQSEKCR  SKKYL
Sbjct: 1   MSAGGAFGGNRGLSPVPPEKGVFPLDHMHLCDLEKKEYLSCLKTSGHQSEKCRLFSKKYL 60

Query: 140 ECRMEKNLMAKQDMTELGFETSSQASLSGDKL 172
           ECRMEKNLMAKQDM+ELGF   S +  SG+K+
Sbjct: 61  ECRMEKNLMAKQDMSELGFVRESNSDASGEKV 92

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g08370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COX19_SCHPO5.8e-1446.67Cytochrome c oxidase assembly protein cox19, mitochondrial OS=Schizosaccharomyce... [more]
COX19_DICDI1.7e-1347.30Cytochrome c oxidase assembly protein COX19 OS=Dictyostelium discoideum GN=cox19... [more]
COX19_BOVIN1.7e-1344.30Cytochrome c oxidase assembly protein COX19 OS=Bos taurus GN=COX19 PE=3 SV=1[more]
COX19_USTMA2.2e-1351.56Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis (strain 521 / FGS... [more]
COX19_MAGOY3.8e-1343.48Cytochrome c oxidase assembly protein COX19 OS=Magnaporthe oryzae (strain Y34) G... [more]
BLAST of Cp4.1LG12g08370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0V0H7V2_SOLCH2.2e-3679.79Putative cytochrome c oxidase assembly protein COX19-like OS=Solanum chacoense P... [more]
M1CIA6_SOLTU3.8e-3679.57Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026453 PE=4 SV=1[more]
K4DFC6_SOLLC3.8e-3679.57Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M5WRR5_PRUPE6.4e-3681.52Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013878mg PE=4 SV=1[more]
M0ZRG9_SOLTU8.4e-3680.22Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402002538 PE=4 SV=1[more]
BLAST of Cp4.1LG12g08370 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G69750.11.7e-3572.53 cytochrome c oxidase 19-2[more]
AT1G66590.28.3e-3573.03 cytochrome c oxidase 19-1[more]
BLAST of Cp4.1LG12g08370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124474|ref|XP_008462179.1|1.0e-4293.55PREDICTED: cytochrome c oxidase assembly protein COX19-like [Cucumis melo][more]
gi|449448014|ref|XP_004141761.1|3.0e-4292.47PREDICTED: cytochrome c oxidase assembly protein COX19-like [Cucumis sativus][more]
gi|460413979|ref|XP_004252352.1|1.4e-3679.79PREDICTED: cytochrome c oxidase assembly protein COX19-like isoform X1 [Solanum ... [more]
gi|697126603|ref|XP_009617334.1|2.4e-3681.52PREDICTED: cytochrome c oxidase assembly protein COX19-like [Nicotiana tomentosi... [more]
gi|658036328|ref|XP_008353708.1|2.4e-3682.61PREDICTED: cytochrome c oxidase assembly protein cox19, mitochondrial-like isofo... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010625CHCH
IPR009069Cys_alpha_HP_mot_SF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g08370.1Cp4.1LG12g08370.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009069Cysteine alpha-hairpin motif superfamilyunknownSSF47072Cysteine alpha-hairpin motifcoord: 106..142
score: 5.8
IPR010625CHCHPFAMPF06747CHCHcoord: 110..143
score: 2.
NoneNo IPR availablePANTHERPTHR21107FAMILY NOT NAMEDcoord: 80..159
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g08370Wax gourdcpewgoB0190
Cp4.1LG12g08370Wax gourdcpewgoB0208
Cp4.1LG12g08370Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g08370Cucurbita pepo (Zucchini)cpecpeB178
Cp4.1LG12g08370Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g08370Cucurbita pepo (Zucchini)cpecpeB182
Cp4.1LG12g08370Cucurbita pepo (Zucchini)cpecpeB187
Cp4.1LG12g08370Cucumber (Gy14) v1cgycpeB0936
Cp4.1LG12g08370Cucurbita maxima (Rimu)cmacpeB257
Cp4.1LG12g08370Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g08370Cucurbita maxima (Rimu)cmacpeB466
Cp4.1LG12g08370Cucurbita maxima (Rimu)cmacpeB903
Cp4.1LG12g08370Cucurbita moschata (Rifu)cmocpeB221
Cp4.1LG12g08370Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g08370Cucurbita moschata (Rifu)cmocpeB426
Cp4.1LG12g08370Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g08370Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g08370Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g08370Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g08370Bottle gourd (USVL1VR-Ls)cpelsiB127
Cp4.1LG12g08370Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g08370Watermelon (Charleston Gray)cpewcgB148
Cp4.1LG12g08370Watermelon (97103) v1cpewmB131
Cp4.1LG12g08370Watermelon (97103) v1cpewmB145
Cp4.1LG12g08370Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g08370Melon (DHL92) v3.5.1cpemeB132
Cp4.1LG12g08370Cucumber (Gy14) v2cgybcpeB306
Cp4.1LG12g08370Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g08370Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g08370Melon (DHL92) v3.6.1cpemedB159
Cp4.1LG12g08370Silver-seed gourdcarcpeB0171
Cp4.1LG12g08370Silver-seed gourdcarcpeB0280
Cp4.1LG12g08370Silver-seed gourdcarcpeB1049
Cp4.1LG12g08370Silver-seed gourdcarcpeB1424
Cp4.1LG12g08370Cucumber (Chinese Long) v3cpecucB0156
Cp4.1LG12g08370Cucumber (Chinese Long) v3cpecucB0188