Cp4.1LG12g07940 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g07940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 6663535 .. 6665867 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATTACCAATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTTTTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTCCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTCTGCGAGCTCGGCTGCGCCACCTCCTCGTGTACCAAGTTCAGCACCCACCAAAACCCAGGTTCTAAAAATTAATAATTTAAACTTTTTTTTTCTAAATTTTATGAAAATTTATTGAAGTGTTCTTGGTTTTGTTGATGCAGCTGAAAACAAAGTGGGAAGCTGTGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGATCTTAGCCGTTCAACTTCTCGTTAGGTAATTTAATAGATTTTCGAGGTGCCAGTGGTTAAGAATTACGATTCTCTAGGATCCGTATAAATTCCAGTGAATCTATTACTTATTTATAAACTCATGATCATCCTTTAAATTAGCCAACATGGGACAACAATCTCAACACCAATTTCATGTTCTCGAGTTAGAGAGAATCATTCGAATTGGCCGCCCCTCTTGAGCGGCCCCAATTGTTGACTGGGGTTTCGATAGCAGTTGGACGGATCTAGGAACTAGCTGCCTTCTCAGATCTCATGGGTATTGCCTATATTAGATGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGTATCATTCCCTAAATTAGTCGATATGAGACTTTCATCATCCAACACCTCCCCTTAATCGAGGCTCGACTCGAACAAACTACGCCTCTCTTTAATCGCGTCTCGACTCCTTTAGAGTCTTAGTCATTTTTTACTGCCTTCAAGGAGGTTCGACATTTGAGGATTTACCAATATATTAGAACGACTAAGTTTAGAGCATGGTTCTGATACCATGATAGATGAACACGACTCTCTACAATGATATGATATTGTCTACTTTATGCATAAGCTCTCATGGCTTTACTTTGGGTTTCCCCAAACGGGTAGAGAGTATTTTTTTTTTATAAACCCATGATCATTCCCTAAATTAGTCGACGTGGGACTTTCATCATCTAACACTTTATAGGTCGTGTTATTATTAAATAAAATTGTTAATATGATAGAGAGGGTCACGGGATGGCATTATTATTATTATTTGATTGAACATAATTTTGGCTATATATGGCCCGTGAACTTTGTTTGTCAAATGCGGATAAAACCACGCACCATTATTTGAGGGCACCCATTTTCAAGCCATGCTTAGATCTAACCCCTAATTATATCCCCTAATTATTTGGTTAACTACACTTACTTACTACTAAACTATGTTTATGTCGGTAGATGTGTCGTAATATCTAATAAATAAGAAAACTCAAGGAAGTCACTAATGCGACCGTGCAAAAGATTAGGTTTGGACTATTCATTGCACAGAGTCGACAAAAAAGTTATGTCAACTCTCCACTACCCTAGTGCAGTCAAGGCAGGCAAAGGTCGGTTAGGATAACGTAAGCTTCGATTTTGTGGAAATGGACAATCGTCTCCTGAATAGAGCCACAGTGTTGTAAACTCGTTCTTGAGAGGGAGTGTGGAGTCATGTCAGATAGCCTAGCCAGCTGGACAGGACACGGCGGATCACATCCCCAAATTGTAGGTGTGGTTCCAAGGGATGTACCTATAACAAGTTACCAAGTTTAGAATTCAGAATGGTTGTAGAACCTTTACAGACCCTAGGGGAAGACTTACGATAGAAACCCACTTAGAACGTCAAGGCACCCAAATGCTTAGATAACACCAAAGATTAAACCTCAAACTTCCTTGACCCCAAAGAAAAACCCCTGAAAATTTGATAGGTAAGAATGCAATGAGAGCCTACGAGTAGGTATTTACTTGATATATTTATATACTCGTTCCTCTCTACATCTCCTTTTTCAGGTGAATGATGCTGCCGGTCAAGGTAAGGGAGGGCTTAGTAGCTTTGTTGCCAAAAAGGGATGTCGACCTAAGGGTCTGTCATGTCTGCATCTTATAGTTGTCATATCATCTTTTTCAGTAACTCGATCTCATTCCGAATTTTTCATTGATTTCATTCATATATGTTTTCACTGCACAATCAGTTGGTCCCGATCTAGTTTAAAGCTTCAAAAATTGAGTCGTGACAGTATATTTGATCCCTCTAAAAAAAAAATAGATTGCAATATAAAAAATCAAACCGATCAATTTGTTTGACG

mRNA sequence

TCATTACCAATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTTTTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTCCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTCTGCGAGCTCGGCTGCGCCACCTCCTCGTGTACCAAGTTCAGCACCCACCAAAACCCAGCTGAAAACAAAGTGGGAAGCTGTGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGATCTTAGCCGTTCAACTTCTCGTTAGGTGAATGATGCTGCCGGTCAAGGTAAGGGAGGGCTTAGTAGCTTTGTTGCCAAAAAGGGATGTCGACCTAAGGGTCTGTCATGTCTGCATCTTATAGTTGTCATATCATCTTTTTCAGTAACTCGATCTCATTCCGAATTTTTCATTGATTTCATTCATATATGTTTTCACTGCACAATCAGTTGGTCCCGATCTAGTTTAAAGCTTCAAAAATTGAGTCGTGACAGTATATTTGATCCCTCTAAAAAAAAAATAGATTGCAATATAAAAAATCAAACCGATCAATTTGTTTGACG

Coding sequence (CDS)

ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTTTTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTCCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTCTGCGAGCTCGGCTGCGCCACCTCCTCGTGTACCAAGTTCAGCACCCACCAAAACCCAGCTGAAAACAAAGTGGGAAGCTGTGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGA

Protein sequence

MESCKAKLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHNAAADDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCSMD
Homology
[Close]
BLAST of Cp4.1LG12g07940 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 1 

Query: 8   LGLMAWLVLSSL---TTANSTSFQECYATCFVIC-AITPGVAFSDCPLRCLQACIIPSFP 67
           + +M  +V+ +L   T A    F+ECY  C V C A +    +  CP  C + C+    P
Sbjct: 3   VAVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSP 62

Query: 68  IHNAAADDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCS 118
             + +++++    ++ +FC+LGCAT  C   S+ QNP   +V +CVDSCS  C+
Sbjct: 63  -PSVSSNNI---DESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

[Close]
BLAST of Cp4.1LG12g07940 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.0e-45
Identity = 92/114 (80.70%), Postives = 101/114 (88.60%), Query Frame = 1 

Query: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHN 66
           K  LMAWL+L+SL+TANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67

Query: 67  AAADDVHR-QQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCSMD 120
             AD VHR QQ+N FFC+LGCA SSCTKFST QNP E KVG CVDSCS+TCSM+
Sbjct: 68  --ADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

[Close]
BLAST of Cp4.1LG12g07940 vs. TrEMBL
Match: A0A061GH02_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027831 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.3e-21
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 1 

Query: 10  LMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHNAAA 69
           LM +LVL  L   ++ SFQ CY  CF+ C ITP      C ++CL+ CIIPSF   +   
Sbjct: 10  LMVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCIIPSFSFPSG-- 69

Query: 70  DDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCS 118
                 +  Q+FC+LGCATS CT  S+ +NP E KVGSCVDSCS TC+
Sbjct: 70  ------KDTQYFCKLGCATSLCTDLSSKENPGEEKVGSCVDSCSETCA 109

[Close]
BLAST of Cp4.1LG12g07940 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.6e-20
Identity = 52/119 (43.70%), Postives = 69/119 (57.98%), Query Frame = 1 

Query: 1   MESCKAKLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIP 60
           ME  K    LM +L+   L   +  +F+ECY TCF+IC ITPG     C  +CL+ CI P
Sbjct: 1   MEKRKVGSLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFP 60

Query: 61  SFPIHNAAADDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCSMD 120
              +H  +  D       ++FC+LGCATS CT  S+  NPA  KV  CV+SCS++CS D
Sbjct: 61  P-KLHTLSLQDT------EYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSKD 112

[Close]
BLAST of Cp4.1LG12g07940 vs. TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.6e-20
Identity = 52/119 (43.70%), Postives = 69/119 (57.98%), Query Frame = 1 

Query: 1   MESCKAKLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIP 60
           ME  K    LM +L+   L   +  +F+ECY TCF+IC ITPG     C  +CL+ CI P
Sbjct: 1   MEKRKVGSLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFP 60

Query: 61  SFPIHNAAADDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCSMD 120
              +H  +  D       ++FC+LGCATS CT  S+  NPA  KV  CV+SCS++CS D
Sbjct: 61  P-KLHTLSLQDT------EYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSKD 112

[Close]
BLAST of Cp4.1LG12g07940 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 1 

Query: 10  LMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHNAAA 69
           +M  LVL  L   ++ SFQ+CYA CF++C   P      C ++CL  CIIPS  + +   
Sbjct: 49  MMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECIIPSSTLESG-- 108

Query: 70  DDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCS 118
                 +  Q+FC+LGCATS CT  S+ +NP E KVGSCVDSCS TC+
Sbjct: 109 ------KDTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCSETCA 148

[Close]
BLAST of Cp4.1LG12g07940 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-12
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 1 

Query: 8   LGLMAWLVLSSL---TTANSTSFQECYATCFVIC-AITPGVAFSDCPLRCLQACIIPSFP 67
           + +M  +V+ +L   T A    F+ECY  C V C A +    +  CP  C + C+    P
Sbjct: 3   VAVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSP 62

Query: 68  IHNAAADDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCS 118
             + +++++    ++ +FC+LGCAT  C   S+ QNP   +V +CVDSCS  C+
Sbjct: 63  -PSVSSNNI---DESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

[Close]
BLAST of Cp4.1LG12g07940 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-08
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 1 

Query: 53  CLQACIIPSFPIHNAAADDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSC 112
           C++ C+ P     ++  D  +    N ++C+LGC+T  C   S+ QNP  +KV  CVDSC
Sbjct: 41  CIKTCLEPP----SSQMDSTNEINHNDYYCKLGCSTHHCASLSSIQNPNVDKVVDCVDSC 100

Query: 113 SRTCS 118
           S  CS
Sbjct: 101 SDKCS 101

[Close]
BLAST of Cp4.1LG12g07940 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 5.7e-45
Identity = 92/114 (80.70%), Postives = 101/114 (88.60%), Query Frame = 1 

Query: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHN 66
           K  LMAWL+L+SL+TANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67

Query: 67  AAADDVHR-QQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCSMD 120
             AD VHR QQ+N FFC+LGCA SSCTKFST QNP E KVG CVDSCS+TCSM+
Sbjct: 68  --ADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

[Close]
BLAST of Cp4.1LG12g07940 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 6.4e-44
Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 1 

Query: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHN 66
           K  LMAWL+L+SL+TANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67

Query: 67  AAADDVHRQ-QKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCSMD 120
              D VHRQ Q+N FFC+LGCA SSCTKFST QNP E KV  CVDSCS+TCSMD
Sbjct: 68  --DDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTCSMD 119

[Close]
BLAST of Cp4.1LG12g07940 vs. NCBI nr
Match: gi|590617165|ref|XP_007023712.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao])

HSP 1 Score: 108.6 bits (270), Expect = 7.6e-21
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 1 

Query: 10  LMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHNAAA 69
           LM +LVL  L   ++ SFQ CY  CF+ C ITP      C ++CL+ CIIPSF   +   
Sbjct: 10  LMVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCIIPSFSFPSG-- 69

Query: 70  DDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCS 118
                 +  Q+FC+LGCATS CT  S+ +NP E KVGSCVDSCS TC+
Sbjct: 70  ------KDTQYFCKLGCATSLCTDLSSKENPGEEKVGSCVDSCSETCA 109

[Close]
BLAST of Cp4.1LG12g07940 vs. NCBI nr
Match: gi|568822290|ref|XP_006465567.1| (PREDICTED: thionin-like protein 2 [Citrus sinensis])

HSP 1 Score: 105.9 bits (263), Expect = 4.9e-20
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 1 

Query: 1   MESCKAKLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIP 60
           ME  K +  LM +L+   L   +  +F+ECY TCF+IC ITPG     C  +CL+ CI P
Sbjct: 1   MEKRKVESLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFP 60

Query: 61  SFPIHNAAADDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCSMD 120
              +H  +  D       ++FC+LGCATS CT  S+  NPA  KV  CV+SCS++CS D
Sbjct: 61  P-KLHTLSLQDT------EYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSKD 112

[Close]
BLAST of Cp4.1LG12g07940 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica])

HSP 1 Score: 105.1 bits (261), Expect = 8.4e-20
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 1 

Query: 11  MAWLVLSSLTTA--NSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHNAA 70
           +A+LVL  L  A  +S SF+ CY +CF++C ITP  + S C  +CL+ CIIPS     + 
Sbjct: 11  VAYLVLGMLMLAGQSSASFKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPS----RSP 70

Query: 71  ADDVHRQQKNQFFCELGCATSSCTKFSTHQNPAENKVGSCVDSCSRTCSM 119
            D  +  + N +FC+LGCA+S C+  ST QNP   KVG CVDSCS+TC++
Sbjct: 71  FDHSNIHKDNVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSKTCTI 116

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g07940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
THNL2_ARATH1.2e-1033.33Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1[more]
BLAST of Cp4.1LG12g07940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K781_CUCSA4.0e-4580.70Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1[more]
A0A061GH02_THECC5.3e-2149.07To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
V4ST32_9ROSI7.6e-2043.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1[more]
A0A067E0U5_CITSI7.6e-2043.70Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1[more]
A0A061GI20_THECC1.3e-1946.30To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
BLAST of Cp4.1LG12g07940 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G12663.16.8e-1233.33 Predicted to encode a PR (pathogenesis-related) protein. Belongs to... [more]
AT1G12672.21.6e-0838.46 unknown protein[more]
BLAST of Cp4.1LG12g07940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778729254|ref|XP_011659556.1|5.7e-4580.70PREDICTED: thionin-like protein 2 [Cucumis sativus][more]
gi|659122243|ref|XP_008461039.1|6.4e-4479.82PREDICTED: thionin-like protein 2 [Cucumis melo][more]
gi|590617165|ref|XP_007023712.1|7.6e-2149.07To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
gi|568822290|ref|XP_006465567.1|4.9e-2043.70PREDICTED: thionin-like protein 2 [Citrus sinensis][more]
gi|657943097|ref|XP_008353739.1|8.4e-2047.27PREDICTED: thionin-like protein 2 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07940.1Cp4.1LG12g07940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36312FAMILY NOT NAMEDcoord: 1..118
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g07940CSPI07G21170Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g07940CsaV3_7G033040Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g07940Bhi09G000096Wax gourdcpewgoB0208
Cp4.1LG12g07940CsGy7G019460Cucumber (Gy14) v2cgybcpeB906
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g07940Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g07940Melon (DHL92) v3.6.1cpemedB159
Cp4.1LG12g07940Silver-seed gourdcarcpeB0209
Cp4.1LG12g07940Silver-seed gourdcarcpeB0280
Cp4.1LG12g07940Silver-seed gourdcarcpeB1049
Cp4.1LG12g07940Silver-seed gourdcarcpeB1424
Cp4.1LG12g07940Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g07940Cucurbita pepo (Zucchini)cpecpeB178
Cp4.1LG12g07940Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g07940Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g07940Cucurbita maxima (Rimu)cmacpeB903
Cp4.1LG12g07940Cucurbita moschata (Rifu)cmocpeB052
Cp4.1LG12g07940Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g07940Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g07940Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g07940Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g07940Bottle gourd (USVL1VR-Ls)cpelsiB127
Cp4.1LG12g07940Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g07940Watermelon (Charleston Gray)cpewcgB148
Cp4.1LG12g07940Watermelon (97103) v1cpewmB131
Cp4.1LG12g07940Melon (DHL92) v3.5.1cpemeB123