Cp4.1LG12g07500 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g07500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S12
LocationCp4.1LG12 : 7008721 .. 7009892 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCGTGAGTGGAAACTTGTTTATAACTTTTACTAATTTTCCTGTTAATTGCCAATTTTTGTGTTGTAGCTGATGGTTTCCTTTTCAATATCTTGGATATAGACGATGCTTTGGTTTTTTTTAGAAGTAGAATCTTCTGCTTGGAATCGATCATTTTGGTCTTAGTTCATATCCAATTCAAAGTTTTGAAGTTCAATATATGTATACACGTTGATCTGTATTAGTTCTTTGCATGGGATTAAGAGTTGCTGGGGATTGAAGATTCCTTTATTACATGTTAAATAGTACTATGGAATTTGAGGCATTTTTTTTTTGGTAATATCATAATATTTGCGTAAATGTCTATTCGATTGCCTTCTATTGTTGTCAGTAACATGCCATAGTGTGGTTTTTTAATCCCTTTTAACATGATTTCTTTTGCAGTGATGAAGTTGCAGTTGTGGCTGAGACTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGATTGCAACCAGCCAGACTATGTTAAACTAGTCAAAGCCCTTTGTGCGGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCCAAAACCCTTGGCGAGTGGGCCGGTGTAAGTGTTTAAAAGGGTTTATCTTGCTCGTTTTTTATTCATCTTTGGCACCATTATGCACTATGCAATACTCATTCTACCAAGATTAAGCCTTTACCTCTTAATGTTTAGCTACATGTTTTACATGTTCTGGATCATACAATGTATACACATAGGTCTATGTTTTAAGCAAATATTTCCCGTATAAGTTCAGGATTACAAACAAGTAATTTGTTTTCCATACTTGGTCTAATTCTTCAGCTATGCAAGATTGACTCAGAAGGAAAGGCCAGGAAGGTTGTTGGTTGCTCGTGTGTCGTAGTTAAGGTACATCTATTTGTCCATTCACATCCATAGCAACTATTCTGTCTTAGAAAACATTTTCGTTTACTTGAAATTTGAATGTGTTATCCATAGGACTTCGGGGAGGATCACGAGGCGCTTCACATCGTGCAGAAGCATGTGAGTTCAAATTAA

mRNA sequence

ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGACTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGATTGCAACCAGCCAGACTATGTTAAACTAGTCAAAGCCCTTTGTGCGGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCCAAAACCCTTGGCGAGTGGGCCGGTCTATGCAAGATTGACTCAGAAGGAAAGGCCAGGAAGGTTGTTGGTTGCTCGTGTGTCGTAGTTAAGGACTTCGGGGAGGATCACGAGGCGCTTCACATCGTGCAGAAGCATGTGAGTTCAAATTAA

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGACTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGATTGCAACCAGCCAGACTATGTTAAACTAGTCAAAGCCCTTTGTGCGGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCCAAAACCCTTGGCGAGTGGGCCGGTCTATGCAAGATTGACTCAGAAGGAAAGGCCAGGAAGGTTGTTGGTTGCTCGTGTGTCGTAGTTAAGGACTTCGGGGAGGATCACGAGGCGCTTCACATCGTGCAGAAGCATGTGAGTTCAAATTAA

Protein sequence

MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Homology
[Close]
BLAST of Cp4.1LG12g07500 vs. Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 103/134 (76.87%), Postives = 119/134 (88.81%), Query Frame = 1 

Query: 6   VAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDC 65
           V    E P P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC
Sbjct: 9   VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDC 68

Query: 66  NQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGE 125
           +QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE
Sbjct: 69  DQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGE 128

Query: 126 DHEALHIVQKHVSS 140
           + E L+IVQ++V S
Sbjct: 129 ESEGLNIVQQYVKS 142

[Close]
BLAST of Cp4.1LG12g07500 vs. Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.7e-52
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 1 

Query: 1   MSADEVAVVAETP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]
BLAST of Cp4.1LG12g07500 vs. Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.0e-50
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 1   MSADEVAVVAETPA----PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]
BLAST of Cp4.1LG12g07500 vs. Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 1 

Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]
BLAST of Cp4.1LG12g07500 vs. Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 1 

Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]
BLAST of Cp4.1LG12g07500 vs. TrEMBL
Match: A0A0A0LM61_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 7.7e-72
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 1 

Query: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAE PAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Cp4.1LG12g07500 vs. TrEMBL
Match: A0A0A0KA08_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 7.7e-72
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 1 

Query: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAE PAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Cp4.1LG12g07500 vs. TrEMBL
Match: W9R0I8_9ROSA (40S ribosomal protein S12 OS=Morus notabilis GN=L484_013506 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.4e-62
Identity = 119/140 (85.00%), Postives = 129/140 (92.14%), Query Frame = 1 

Query: 1   MSADEVAVVAETPA-PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 60
           MS +E AV  E  A PALGEPMDI TALQLVLRKSLAHGGL+RGLHESAK IEKHAAQLC
Sbjct: 1   MSGEEGAVAVEAAAAPALGEPMDITTALQLVLRKSLAHGGLIRGLHESAKVIEKHAAQLC 60

Query: 61  VLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 120
           VL EDC+QPDYVKLVKALCA+HNVN++TVPSAKTLGEWAGLCKIDSEGKARKVVGC+CVV
Sbjct: 61  VLAEDCDQPDYVKLVKALCADHNVNMLTVPSAKTLGEWAGLCKIDSEGKARKVVGCACVV 120

Query: 121 VKDFGEDHEALHIVQKHVSS 140
           VKDFGEDHEALH+VQ+HV +
Sbjct: 121 VKDFGEDHEALHVVQQHVKA 140

[Close]
BLAST of Cp4.1LG12g07500 vs. TrEMBL
Match: A0A068TPS8_COFCA (40S ribosomal protein S12 OS=Coffea canephora GN=GSCOC_T00022242001 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.7e-61
Identity = 118/140 (84.29%), Postives = 127/140 (90.71%), Query Frame = 1 

Query: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS +E  V  ETPAPALGEPMDI TALQLVLRKSLAHGGL RGLHE AK IEKHAAQLCV
Sbjct: 1   MSGEEQPVAVETPAPALGEPMDIMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           L EDCNQPDYVKLVKALCA+HNVNL++VPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LAEDCNQPDYVKLVKALCADHNVNLISVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KD+GE+ E LHIVQ++V S+
Sbjct: 121 KDYGEETEGLHIVQEYVKSH 140

[Close]
BLAST of Cp4.1LG12g07500 vs. TrEMBL
Match: M5XB76_PRUPE (40S ribosomal protein S12 OS=Prunus persica GN=PRUPE_ppa012957mg PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-60
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 1 

Query: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           +S +     A  PAPALGEPMD+ TALQLVLRKSLAHGGLVRGLHE+AK IEKHAAQLCV
Sbjct: 8   VSTEAAPAAAPAPAPALGEPMDVTTALQLVLRKSLAHGGLVRGLHEAAKVIEKHAAQLCV 67

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           L EDC+Q DYVKLVKALCA+HNVN++TVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 68  LAEDCDQQDYVKLVKALCADHNVNMLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 127

Query: 121 KDFGEDHEALHIVQKHVSS 140
           KDFGEDHE LH+VQ+HV +
Sbjct: 128 KDFGEDHEGLHVVQQHVKA 146

[Close]
BLAST of Cp4.1LG12g07500 vs. TAIR10
Match: AT2G32060.1 (AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 204.1 bits (518), Expect = 5.5e-53
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 1 

Query: 1   MSADEVAVVAETP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]
BLAST of Cp4.1LG12g07500 vs. TAIR10
Match: AT1G15930.2 (AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 198.0 bits (502), Expect = 3.9e-51
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 1   MSADEVAVVAETPA----PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]
BLAST of Cp4.1LG12g07500 vs. NCBI nr
Match: gi|449458546|ref|XP_004147008.1| (PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 1 

Query: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAE PAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Cp4.1LG12g07500 vs. NCBI nr
Match: gi|449436183|ref|XP_004135873.1| (PREDICTED: 40S ribosomal protein S12 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 1 

Query: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAE PAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Cp4.1LG12g07500 vs. NCBI nr
Match: gi|659122493|ref|XP_008461174.1| (PREDICTED: 40S ribosomal protein S12 [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 9.4e-71
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1 

Query: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAE PAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]
BLAST of Cp4.1LG12g07500 vs. NCBI nr
Match: gi|1009113090|ref|XP_015871684.1| (PREDICTED: 40S ribosomal protein S12 [Ziziphus jujuba])

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 119/140 (85.00%), Postives = 128/140 (91.43%), Query Frame = 1 

Query: 1   MSADEVAVVAETPA-PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 60
           MS DE  V  E  A PALGEPMDI TALQLVLRKSLAHGGL+RGLHE+AK IEKHAAQLC
Sbjct: 1   MSGDEAPVAVEAAAAPALGEPMDIMTALQLVLRKSLAHGGLIRGLHEAAKVIEKHAAQLC 60

Query: 61  VLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 120
           VL EDC+QPDYVKLVKALCA+HNVN++TVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV
Sbjct: 61  VLAEDCDQPDYVKLVKALCADHNVNMLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 120

Query: 121 VKDFGEDHEALHIVQKHVSS 140
           VKDFGEDHEALH+VQ+HV +
Sbjct: 121 VKDFGEDHEALHVVQQHVKA 140

[Close]
BLAST of Cp4.1LG12g07500 vs. NCBI nr
Match: gi|470134844|ref|XP_004303246.1| (PREDICTED: 40S ribosomal protein S12 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 119/141 (84.40%), Postives = 129/141 (91.49%), Query Frame = 1 

Query: 1   MSADEVA--VVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS DE    VVAE PAPALGEPMDI TA+QLVLRKSLAHGGLVRGLHE+AK +EKHAAQL
Sbjct: 1   MSGDEAPAPVVAEAPAPALGEPMDIMTAVQLVLRKSLAHGGLVRGLHEAAKVVEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVL EDC+Q DYVKLVK LCAEHNVN++TVP+AKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLAEDCDQQDYVKLVKGLCAEHNVNMLTVPNAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSS 140
           VVKDFGEDHEALH+VQ+HV +
Sbjct: 121 VVKDFGEDHEALHVVQQHVKA 141

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g07500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS12_HORVU1.5e-5576.8740S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1[more]
RS122_ARATH9.7e-5269.4440S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=1 SV=1[more]
RS121_ARATH7.0e-5070.6340S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1[more]
RS12_HUMAN5.2e-3758.6840S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3[more]
RS12_BOVIN5.2e-3758.6840S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1[more]
BLAST of Cp4.1LG12g07500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM61_CUCSA7.7e-7298.5740S ribosomal protein S12 OS=Cucumis sativus GN=Csa_2G258680 PE=3 SV=1[more]
A0A0A0KA08_CUCSA7.7e-7297.8640S ribosomal protein S12 OS=Cucumis sativus GN=Csa_7G432030 PE=3 SV=1[more]
W9R0I8_9ROSA9.4e-6285.0040S ribosomal protein S12 OS=Morus notabilis GN=L484_013506 PE=3 SV=1[more]
A0A068TPS8_COFCA2.7e-6184.2940S ribosomal protein S12 OS=Coffea canephora GN=GSCOC_T00022242001 PE=3 SV=1[more]
M5XB76_PRUPE1.4e-6082.0140S ribosomal protein S12 OS=Prunus persica GN=PRUPE_ppa012957mg PE=3 SV=1[more]
BLAST of Cp4.1LG12g07500 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32060.15.5e-5369.44 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
AT1G15930.23.9e-5170.63 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
BLAST of Cp4.1LG12g07500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458546|ref|XP_004147008.1|1.1e-7198.57PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus][more]
gi|449436183|ref|XP_004135873.1|1.1e-7197.86PREDICTED: 40S ribosomal protein S12 [Cucumis sativus][more]
gi|659122493|ref|XP_008461174.1|9.4e-7196.43PREDICTED: 40S ribosomal protein S12 [Cucumis melo][more]
gi|1009113090|ref|XP_015871684.1|1.0e-6185.00PREDICTED: 40S ribosomal protein S12 [Ziziphus jujuba][more]
gi|470134844|ref|XP_004303246.1|1.0e-6184.40PREDICTED: 40S ribosomal protein S12 isoform X1 [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR000530Ribosomal_S12e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07500.1Cp4.1LG12g07500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 85..106
score: 3.2E-26coord: 110..123
score: 3.2E-26coord: 30..43
score: 3.2E-26coord: 44..60
score: 3.2
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 7..140
score: 2.0
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 26..44
scor
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 26..119
score: 7.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g07500Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g07500Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g07500Cucurbita pepo (Zucchini)cpecpeB191
Cp4.1LG12g07500Cucumber (Gy14) v1cgycpeB0229
Cp4.1LG12g07500Cucumber (Gy14) v1cgycpeB0431
Cp4.1LG12g07500Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g07500Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g07500Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g07500Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g07500Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g07500Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g07500Wild cucumber (PI 183967)cpecpiB130
Cp4.1LG12g07500Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g07500Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g07500Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g07500Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g07500Watermelon (Charleston Gray)cpewcgB152
Cp4.1LG12g07500Watermelon (97103) v1cpewmB131
Cp4.1LG12g07500Watermelon (97103) v1cpewmB142
Cp4.1LG12g07500Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g07500Melon (DHL92) v3.5.1cpemeB131
Cp4.1LG12g07500Cucumber (Gy14) v2cgybcpeB177
Cp4.1LG12g07500Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g07500Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g07500Silver-seed gourdcarcpeB0493
Cp4.1LG12g07500Silver-seed gourdcarcpeB0631
Cp4.1LG12g07500Silver-seed gourdcarcpeB1356
Cp4.1LG12g07500Cucumber (Chinese Long) v3cpecucB0147
Cp4.1LG12g07500Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g07500Wax gourdcpewgoB0201