Cp4.1LG12g05220 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g05220
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHistone H2A
LocationCp4.1LG12 : 8271211 .. 8272134 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTTAGTGCTTGTTCTTCTCATCAGATCTTTTACTTGTGTTTCCGATCTGTTTATCTGTGGAGTTGTTTTCGTCTGATTGTGATGAAGTGAGGTGCTGTAGTGTAGTGCTTTGATCACTTGAATCGAAATTCTTATATCTGATTTTGTTGGGTTTCGTCTGCTTTGGCTCTGGAATTGATTTGGAGATGATGAATTTCGATTTGTTTCTTTAAATTGATGAAGAAACTATTTGAAATTAGGTTCACCATTGCATAGTAATCTCGAGCTTTGAATTGTGGCCTCCCTTTTTCTCTTGCATGTCATCCAATTGGCTAGAAATTGATACTGAATGCAGCTTATTTAGTTTTACTTGGTGAATAAGATGCCAAAGCCACAAGACTATGTGAGTTTGTTCTTTGGATGAACGAAGTTTCATTTGGGTTCATCCCTATTGTTTCTGTACAATGATGATGAATTGGTTTTGCATTTAAAGTAGCTGAGTATACTAAAAATCTTCATTTGCAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGGGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

mRNA sequence

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGGGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Coding sequence (CDS)

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGGGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Protein sequence

MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGSGKGDIGSASQEF
BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-64
Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+A+TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-62
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 1

Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.6e-62
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 1

Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-61
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 1

Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SS+  KGGRGK K+TKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEY
Sbjct: 2   SSSGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK+G  KG+IGSASQEF
Sbjct: 122 KKSGKDKGEIGSASQEF 138

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-58
Identity = 121/137 (88.32%), Postives = 124/137 (90.51%), Query Frame = 1

Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SSA   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEY
Sbjct: 2   SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK G  K DIGSASQEF
Sbjct: 122 KKGGKDKADIGSASQEF 138

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A0A0K7H2_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.4e-67
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A0B0PK64_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_32368 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTVSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A061DQ08_THECC (Histone H2A OS=Theobroma cacao GN=TCM_004504 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A0D2QSD8_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_004G054400 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTVSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A067JNE6_JATCU (Histone H2A OS=Jatropha curcas GN=JCGZ_22006 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS  STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 145 MSSGGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 204

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 205 EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 264

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 265 LPKKMGKGKGDIGSASQEF 283

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 239.6 bits (610), Expect = 1.2e-63
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 1

Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 238.4 bits (607), Expect = 2.6e-63
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 1

Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-52
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 1

Query: 10  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-51
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           M+    T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 1   MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  L
Sbjct: 61  EYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLL 120

Query: 121 LPKKAGSGK 130
           LPKKAG+ K
Sbjct: 121 LPKKAGASK 126

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-50
Identity = 106/124 (85.48%), Postives = 109/124 (87.90%), Query Frame = 1

Query: 10  GRGKPK----ATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLK GKYA RVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|449462308|ref|XP_004148883.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-66
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|659101085|ref|XP_008451417.1| (PREDICTED: histone H2AX [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.1e-66
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|720088934|ref|XP_010244611.1| (PREDICTED: histone H2AX [Nelumbo nucifera])

HSP 1 Score: 252.3 bits (643), Expect = 4.9e-64
Identity = 133/139 (95.68%), Postives = 135/139 (97.12%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKIGKGKGEIGSASQEF 139

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|743846516|ref|XP_010938857.1| (PREDICTED: histone H2AX [Elaeis guineensis])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKQGKGKGEIGSASQEF 139

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|590718120|ref|XP_007050747.1| (Gamma histone variant H2AX [Theobroma cacao])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
H2AX_CICAR1.7e-6492.81Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH2.1e-6291.30Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1[more]
H2AXA_ARATH4.6e-6290.58Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1[more]
H2AX_PICAB1.3e-6191.24Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ORYSJ1.8e-5888.32Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K7H2_CUCSA7.4e-6799.28Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1[more]
A0A0B0PK64_GOSAR1.0e-6394.24Histone H2A OS=Gossypium arboreum GN=F383_32368 PE=3 SV=1[more]
A0A061DQ08_THECC1.0e-6394.24Histone H2A OS=Theobroma cacao GN=TCM_004504 PE=3 SV=1[more]
A0A0D2QSD8_GOSRA1.0e-6394.24Histone H2A OS=Gossypium raimondii GN=B456_004G054400 PE=3 SV=1[more]
A0A067JNE6_JATCU1.3e-6394.24Histone H2A OS=Jatropha curcas GN=JCGZ_22006 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G54690.11.2e-6391.30 gamma histone variant H2AX[more]
AT1G08880.12.6e-6390.58 Histone superfamily protein[more]
AT4G27230.12.1e-5287.90 histone H2A 2[more]
AT5G54640.13.0e-5183.72 Histone superfamily protein[more]
AT3G20670.11.5e-5085.48 histone H2A 13[more]
Match NameE-valueIdentityDescription
gi|449462308|ref|XP_004148883.1|1.1e-6699.28PREDICTED: histone H2AX [Cucumis sativus][more]
gi|659101085|ref|XP_008451417.1|3.1e-6698.56PREDICTED: histone H2AX [Cucumis melo][more]
gi|720088934|ref|XP_010244611.1|4.9e-6495.68PREDICTED: histone H2AX [Nelumbo nucifera][more]
gi|743846516|ref|XP_010938857.1|1.4e-6394.96PREDICTED: histone H2AX [Elaeis guineensis][more]
gi|590718120|ref|XP_007050747.1|1.4e-6394.24Gamma histone variant H2AX [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR002119Histone_H2A
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g05220.1Cp4.1LG12g05220.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 47..62
score: 1.1E-51coord: 62..75
score: 1.1E-51coord: 18..40
score: 1.1E-51coord: 76..90
score: 1.1E-51coord: 104..122
score: 1.1
IPR002119Histone H2ASMARTSM00414h2a4coord: 7..127
score: 8.0
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 12..93
score: 8.7
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 11..126
score: 4.6
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 21..124
score: 2.4
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 4..139
score: 2.8E

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None