Cp4.1LG12g05220 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g05220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Histone H2A
Location	Cp4.1LG12 : 8271211 .. 8272134 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTTAGTGCTTGTTCTTCTCATCAGATCTTTTACTTGTGTTTCCGATCTGTTTATCTGTGGAGTTGTTTTCGTCTGATTGTGATGAAGTGAGGTGCTGTAGTGTAGTGCTTTGATCACTTGAATCGAAATTCTTATATCTGATTTTGTTGGGTTTCGTCTGCTTTGGCTCTGGAATTGATTTGGAGATGATGAATTTCGATTTGTTTCTTTAAATTGATGAAGAAACTATTTGAAATTAGGTTCACCATTGCATAGTAATCTCGAGCTTTGAATTGTGGCCTCCCTTTTTCTCTTGCATGTCATCCAATTGGCTAGAAATTGATACTGAATGCAGCTTATTTAGTTTTACTTGGTGAATAAGATGCCAAAGCCACAAGACTATGTGAGTTTGTTCTTTGGATGAACGAAGTTTCATTTGGGTTCATCCCTATTGTTTCTGTACAATGATGATGAATTGGTTTTGCATTTAAAGTAGCTGAGTATACTAAAAATCTTCATTTGCAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGGGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

mRNA sequence

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGGGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Coding sequence (CDS)

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGGGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Protein sequence

MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGSGKGDIGSASQEF

Homology

[Close]

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-64
Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+A+TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-62
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 1


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.6e-62
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 1


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-61
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 1


Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SS+  KGGRGK K+TKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEY
Sbjct: 2   SSSGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK+G  KG+IGSASQEF
Sbjct: 122 KKSGKDKGEIGSASQEF 138

[Close]

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-58
Identity = 121/137 (88.32%), Postives = 124/137 (90.51%), Query Frame = 1


Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SSA   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEY
Sbjct: 2   SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK G  K DIGSASQEF
Sbjct: 122 KKGGKDKADIGSASQEF 138

[Close]

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A0A0K7H2_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.4e-67
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A0B0PK64_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_32368 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTVSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

[Close]

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A061DQ08_THECC (Histone H2A OS=Theobroma cacao GN=TCM_004504 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

[Close]

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A0D2QSD8_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_004G054400 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTVSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

[Close]

BLAST of Cp4.1LG12g05220 vs. TrEMBL
Match: A0A067JNE6_JATCU (Histone H2A OS=Jatropha curcas GN=JCGZ_22006 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS  STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 145 MSSGGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 204

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 205 EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 264

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 265 LPKKMGKGKGDIGSASQEF 283

[Close]

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 239.6 bits (610), Expect = 1.2e-63
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 1


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 238.4 bits (607), Expect = 2.6e-63
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 1


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-52
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 1


Query: 10  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-51
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           M+    T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 1   MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  L
Sbjct: 61  EYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLL 120

Query: 121 LPKKAGSGK 130
           LPKKAG+ K
Sbjct: 121 LPKKAGASK 126

[Close]

BLAST of Cp4.1LG12g05220 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-50
Identity = 106/124 (85.48%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 10  GRGKPK----ATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLK GKYA RVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

[Close]

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|449462308|ref|XP_004148883.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-66
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|659101085|ref|XP_008451417.1| (PREDICTED: histone H2AX [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.1e-66
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|720088934|ref|XP_010244611.1| (PREDICTED: histone H2AX [Nelumbo nucifera])

HSP 1 Score: 252.3 bits (643), Expect = 4.9e-64
Identity = 133/139 (95.68%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKIGKGKGEIGSASQEF 139

[Close]

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|743846516|ref|XP_010938857.1| (PREDICTED: histone H2AX [Elaeis guineensis])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKQGKGKGEIGSASQEF 139

[Close]

BLAST of Cp4.1LG12g05220 vs. NCBI nr
Match: gi|590718120|ref|XP_007050747.1| (Gamma histone variant H2AX [Theobroma cacao])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g05220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2AX_CICAR	1.7e-64	92.81	Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1	[more]
H2AXB_ARATH	2.1e-62	91.30	Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1	[more]
H2AXA_ARATH	4.6e-62	90.58	Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1	[more]
H2AX_PICAB	1.3e-61	91.24	Histone H2AX OS=Picea abies PE=2 SV=1	[more]
H2AXB_ORYSJ	1.8e-58	88.32	Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1	[more]

BLAST of Cp4.1LG12g05220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7H2_CUCSA	7.4e-67	99.28	Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1	[more]
A0A0B0PK64_GOSAR	1.0e-63	94.24	Histone H2A OS=Gossypium arboreum GN=F383_32368 PE=3 SV=1	[more]
A0A061DQ08_THECC	1.0e-63	94.24	Histone H2A OS=Theobroma cacao GN=TCM_004504 PE=3 SV=1	[more]
A0A0D2QSD8_GOSRA	1.0e-63	94.24	Histone H2A OS=Gossypium raimondii GN=B456_004G054400 PE=3 SV=1	[more]
A0A067JNE6_JATCU	1.3e-63	94.24	Histone H2A OS=Jatropha curcas GN=JCGZ_22006 PE=3 SV=1	[more]

BLAST of Cp4.1LG12g05220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54690.1	1.2e-63	91.30	gamma histone variant H2AX	[more]
AT1G08880.1	2.6e-63	90.58	Histone superfamily protein	[more]
AT4G27230.1	2.1e-52	87.90	histone H2A 2	[more]
AT5G54640.1	3.0e-51	83.72	Histone superfamily protein	[more]
AT3G20670.1	1.5e-50	85.48	histone H2A 13	[more]

BLAST of Cp4.1LG12g05220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462308\|ref\|XP_004148883.1\|	1.1e-66	99.28	PREDICTED: histone H2AX [Cucumis sativus]	[more]
gi\|659101085\|ref\|XP_008451417.1\|	3.1e-66	98.56	PREDICTED: histone H2AX [Cucumis melo]	[more]
gi\|720088934\|ref\|XP_010244611.1\|	4.9e-64	95.68	PREDICTED: histone H2AX [Nelumbo nucifera]	[more]
gi\|743846516\|ref\|XP_010938857.1\|	1.4e-63	94.96	PREDICTED: histone H2AX [Elaeis guineensis]	[more]
gi\|590718120\|ref\|XP_007050747.1\|	1.4e-63	94.24	Gamma histone variant H2AX [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR002119	Histone_H2A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g05220.1	Cp4.1LG12g05220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 47..62 score: 1.1E-51coord: 62..75 score: 1.1E-51coord: 18..40 score: 1.1E-51coord: 76..90 score: 1.1E-51coord: 104..122 score: 1.1
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 7..127 score: 8.0
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..93 score: 8.7
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 11..126 score: 4.6
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 21..124 score: 2.4
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 4..139 score: 2.8E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g05220	Cucurbita pepo (Zucchini)	cpecpeB152
Cp4.1LG12g05220	Cucurbita pepo (Zucchini)	cpecpeB157
Cp4.1LG12g05220	Cucumber (Gy14) v1	cgycpeB0150
Cp4.1LG12g05220	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g05220	Cucurbita maxima (Rimu)	cmacpeB902
Cp4.1LG12g05220	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g05220	Cucurbita moschata (Rifu)	cmocpeB336
Cp4.1LG12g05220	Cucurbita moschata (Rifu)	cmocpeB839
Cp4.1LG12g05220	Wild cucumber (PI 183967)	cpecpiB160
Cp4.1LG12g05220	Wild cucumber (PI 183967)	cpecpiB163
Cp4.1LG12g05220	Cucumber (Chinese Long) v2	cpecuB158
Cp4.1LG12g05220	Cucumber (Chinese Long) v2	cpecuB161
Cp4.1LG12g05220	Bottle gourd (USVL1VR-Ls)	cpelsiB113
Cp4.1LG12g05220	Watermelon (Charleston Gray)	cpewcgB126
Cp4.1LG12g05220	Watermelon (97103) v1	cpewmB131
Cp4.1LG12g05220	Watermelon (97103) v1	cpewmB132
Cp4.1LG12g05220	Melon (DHL92) v3.5.1	cpemeB124
Cp4.1LG12g05220	Cucumber (Gy14) v2	cgybcpeB901
Cp4.1LG12g05220	Cucumber (Gy14) v2	cgybcpeB906
Cp4.1LG12g05220	Melon (DHL92) v3.6.1	cpemedB151
Cp4.1LG12g05220	Melon (DHL92) v3.6.1	cpemedB154
Cp4.1LG12g05220	Silver-seed gourd	carcpeB0158
Cp4.1LG12g05220	Silver-seed gourd	carcpeB0159
Cp4.1LG12g05220	Silver-seed gourd	carcpeB1198
Cp4.1LG12g05220	Silver-seed gourd	carcpeB1199
Cp4.1LG12g05220	Cucumber (Chinese Long) v3	cpecucB0183
Cp4.1LG12g05220	Cucumber (Chinese Long) v3	cpecucB0186
Cp4.1LG12g05220	Cucumber (Chinese Long) v3	cpecucB0188
Cp4.1LG12g05220	Wax gourd	cpewgoB0203
Cp4.1LG12g05220	Wax gourd	cpewgoB0205