Cp4.1LG12g05210 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g05210
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHistone H2A
LocationCp4.1LG12 : 8272604 .. 8273404 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTATGGTATGAATCCATCTCACCGCCGGAAAGTAAAAATGAGTTCTACCGATGTTCCGACTAAGGGTGGCAGAGGCAAGAAATCTGCCGCCAAGGCAGTCTCCAGGTCTCACAAGGCTGGTCTTCAATTCCCCGTGGGTCGTATTGCCAGGTACCTCAAGAAGGGCCGTTATGCCCAGCGCGTAGGTTCTGGATCACCGGTTTACCTCTCCGCCGTCCTCGAATACCTCGTCGCTGAGGTTCGTAAGGCTACTTTCGTTTACAGTTCAATTCTAAGATTTTTAGTGTTTTGTTTCAGGAATTTTGTTTTTCGTTTAGGTTTTGGAGTTAGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCGAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCTAGTGGAGGAGTGATGCCGAAGATTCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAGGCCGAAATCGGATCGGCCTCTCAAGAATTTTAGGTTACGGTAGAAATCACTACCATTGATGATGAAATGAAAATTAAATAGTTAGGTTATGTTAGATTGTTATTAGCTTCAATGGATCATACTTCTTTCCGATGTAAATTTGCGAAACGAATTTCGCATAGATCAGGTTTCGTCATTGTCGTCGTTCAACTTTTTTATTGTGTAAATGCGGATGAAGTTCACCGCTAATTAGAATCGAAAGAAACTAGTCGAGTTTTCAATTTCCTGGAATCCGTAAATTTTCTT

mRNA sequence

TCTTCTATGGTATGAATCCATCTCACCGCCGGAAAGTAAAAATGAGTTCTACCGATGTTCCGACTAAGGGTGGCAGAGGCAAGAAATCTGCCGCCAAGGCAGTCTCCAGGTCTCACAAGGCTGGTCTTCAATTCCCCGTGGGTCGTATTGCCAGGTACCTCAAGAAGGGCCGTTATGCCCAGCGCGTAGGTTCTGGATCACCGGTTTACCTCTCCGCCGTCCTCGAATACCTCGTCGCTGAGGTTTTGGAGTTAGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCGAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCTAGTGGAGGAGTGATGCCGAAGATTCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAGGCCGAAATCGGATCGGCCTCTCAAGAATTTTAGGTTACGGTAGAAATCACTACCATTGATGATGAAATGAAAATTAAATAGTTAGGTTATGTTAGATTGTTATTAGCTTCAATGGATCATACTTCTTTCCGATGTAAATTTGCGAAACGAATTTCGCATAGATCAGGTTTCGTCATTGTCGTCGTTCAACTTTTTTATTGTGTAAATGCGGATGAAGTTCACCGCTAATTAGAATCGAAAGAAACTAGTCGAGTTTTCAATTTCCTGGAATCCGTAAATTTTCTT

Coding sequence (CDS)

ATGAATCCATCTCACCGCCGGAAAGTAAAAATGAGTTCTACCGATGTTCCGACTAAGGGTGGCAGAGGCAAGAAATCTGCCGCCAAGGCAGTCTCCAGGTCTCACAAGGCTGGTCTTCAATTCCCCGTGGGTCGTATTGCCAGGTACCTCAAGAAGGGCCGTTATGCCCAGCGCGTAGGTTCTGGATCACCGGTTTACCTCTCCGCCGTCCTCGAATACCTCGTCGCTGAGGTTTTGGAGTTAGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCGAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCTAGTGGAGGAGTGATGCCGAAGATTCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAGGCCGAAATCGGATCGGCCTCTCAAGAATTTTAG

Protein sequence

MNPSHRRKVKMSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDKAEIGSASQEF
Homology
[Close]
BLAST of Cp4.1LG12g05210 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 9.2e-56
Identity = 116/142 (81.69%), Postives = 127/142 (89.44%), Query Frame = 1 

Query: 11  MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70
           MSST   TKGGRGK  A+K+VSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 71  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130
           LEYL AEVLELAGNAARDNK NRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 131 LLPKKAGNAKDKAEIGSASQEF 153
           LLPKK G  K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05210 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.5e-55
Identity = 110/133 (82.71%), Postives = 123/133 (92.48%), Query Frame = 1 

Query: 20  GGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVAEVL 79
           GGRGK   +K+VSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYL AEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 80  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 139
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 140 KDKAEIGSASQEF 153
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]
BLAST of Cp4.1LG12g05210 vs. Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.5e-55
Identity = 110/133 (82.71%), Postives = 123/133 (92.48%), Query Frame = 1 

Query: 20  GGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVAEVL 79
           GGRGK   +K+VSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYL AEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 80  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 139
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 140 KDKAEIGSASQEF 153
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]
BLAST of Cp4.1LG12g05210 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.8e-55
Identity = 110/134 (82.09%), Postives = 123/134 (91.79%), Query Frame = 1 

Query: 19  KGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVAEV 78
           KGGRGK  + K+VSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYL AEV
Sbjct: 7   KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEV 66

Query: 79  LELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGN 138
           LELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLG+VTIA+GGV+P IHQ LLPKK+G 
Sbjct: 67  LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG- 126

Query: 139 AKDKAEIGSASQEF 153
            KDK EIGSASQEF
Sbjct: 127 -KDKGEIGSASQEF 138

[Close]
BLAST of Cp4.1LG12g05210 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-54
Identity = 110/135 (81.48%), Postives = 122/135 (90.37%), Query Frame = 1 

Query: 18  TKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVAE 77
           TKGGRGK  A K+VSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYL AE
Sbjct: 10  TKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAE 69

Query: 78  VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAG 137
           VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K G
Sbjct: 70  VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129

Query: 138 NAKDKAEIGSASQEF 153
             K+K +IGSASQEF
Sbjct: 130 --KNKGDIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05210 vs. TrEMBL
Match: A0A0A0K525_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.8e-66
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 1 

Query: 11  MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70
           MSST+V TKGGRGKK++ K+VSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 71  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130
           LEYL AEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 131 LLPKKAGNAKDKAEIGSASQEF 153
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05210 vs. TrEMBL
Match: A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.9e-57
Identity = 118/142 (83.10%), Postives = 129/142 (90.85%), Query Frame = 1 

Query: 11  MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70
           MSST   TKGGRGK  A K+VSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 71  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130
           LEYL AEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 131 LLPKKAGNAKDKAEIGSASQEF 153
           LLPKK G  KDK +IGSASQEF
Sbjct: 121 LLPKKVG--KDKGDIGSASQEF 140

[Close]
BLAST of Cp4.1LG12g05210 vs. TrEMBL
Match: A0A0B0NVE5_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_22140 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.2e-56
Identity = 118/142 (83.10%), Postives = 129/142 (90.85%), Query Frame = 1 

Query: 11  MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70
           MSST   TKGGRGK  A+K+VSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 71  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130
           LEYL AEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 131 LLPKKAGNAKDKAEIGSASQEF 153
           LLPKK G  KDK EIGSASQEF
Sbjct: 121 LLPKKMG--KDKGEIGSASQEF 140

[Close]
BLAST of Cp4.1LG12g05210 vs. TrEMBL
Match: V7CZN0_PHAVU (Histone H2A OS=Phaseolus vulgaris GN=PHAVU_001G146100g PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.2e-56
Identity = 123/145 (84.83%), Postives = 129/145 (88.97%), Query Frame = 1 

Query: 11  MSSTDVPT---KGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 70
           MSST+V T   KGGRGK    K+VSRS KAGLQFPVGRIARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60

Query: 71  SAVLEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 130
           SAVLEYL AEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  SAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 131 HQSLLPKKAGNAKDKAEIGSASQEF 153
           HQ+LLPKK G  K K EIGSASQEF
Sbjct: 121 HQNLLPKKTG--KGKGEIGSASQEF 143

[Close]
BLAST of Cp4.1LG12g05210 vs. TrEMBL
Match: A0A0S3RXP1_PHAAN (Histone H2A OS=Vigna angularis var. angularis GN=Vigan.04G292000 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.8e-56
Identity = 122/145 (84.14%), Postives = 129/145 (88.97%), Query Frame = 1 

Query: 11  MSSTDVPT---KGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 70
           MSST+V     KGGRGK    K+VSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 71  SAVLEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 130
           +AVLEYL AEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 131 HQSLLPKKAGNAKDKAEIGSASQEF 153
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

[Close]
BLAST of Cp4.1LG12g05210 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 213.4 bits (542), Expect = 9.8e-56
Identity = 110/135 (81.48%), Postives = 122/135 (90.37%), Query Frame = 1 

Query: 18  TKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVAE 77
           TKGGRGK  A K+VSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYL AE
Sbjct: 10  TKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAE 69

Query: 78  VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAG 137
           VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K G
Sbjct: 70  VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129

Query: 138 NAKDKAEIGSASQEF 153
             K+K +IGSASQEF
Sbjct: 130 --KNKGDIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05210 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-55
Identity = 110/135 (81.48%), Postives = 122/135 (90.37%), Query Frame = 1 

Query: 18  TKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVAE 77
           TKGGRGK  A K+VSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYL AE
Sbjct: 10  TKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAE 69

Query: 78  VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAG 137
           VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K G
Sbjct: 70  VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129

Query: 138 NAKDKAEIGSASQEF 153
             K+K +IGSASQEF
Sbjct: 130 --KNKGDIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05210 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 190.7 bits (483), Expect = 6.8e-49
Identity = 100/128 (78.12%), Postives = 110/128 (85.94%), Query Frame = 1 

Query: 21  GRGKK----SAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVA 80
           GRGK     SA KA +RS KAGLQFPVGRIAR+LKKG+YA+RVG+G+PVYL+AVLEYL A
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 81  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 140
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

Query: 141 GNAKDKAE 145
           G +K  AE
Sbjct: 123 GASKPSAE 130

[Close]
BLAST of Cp4.1LG12g05210 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-48
Identity = 98/128 (76.56%), Postives = 111/128 (86.72%), Query Frame = 1 

Query: 21  GRGKK----SAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVA 80
           GRGK+    +A K+ SRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYL A
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 81  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 140
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 141 GNAKDKAE 145
           G++K   E
Sbjct: 123 GSSKPTEE 130

[Close]
BLAST of Cp4.1LG12g05210 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 186.8 bits (473), Expect = 9.8e-48
Identity = 98/128 (76.56%), Postives = 109/128 (85.16%), Query Frame = 1 

Query: 21  GRGKK----SAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLVA 80
           GRGK      A KA SRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYL A
Sbjct: 3   GRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 81  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 140
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 141 GNAKDKAE 145
           G +K + +
Sbjct: 123 GASKPQED 130

[Close]
BLAST of Cp4.1LG12g05210 vs. NCBI nr
Match: gi|449462306|ref|XP_004148882.1| (PREDICTED: histone H2AX-like [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.6e-66
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 1 

Query: 11  MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70
           MSST+V TKGGRGKK++ K+VSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 71  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130
           LEYL AEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 131 LLPKKAGNAKDKAEIGSASQEF 153
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05210 vs. NCBI nr
Match: gi|659101083|ref|XP_008451416.1| (PREDICTED: histone H2AX-like [Cucumis melo])

HSP 1 Score: 258.8 bits (660), Expect = 5.8e-66
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 1 

Query: 11  MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70
           MSST+V TKGGRG+K++ K+VSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 71  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130
           LEYL AEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 131 LLPKKAGNAKDKAEIGSASQEF 153
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05210 vs. NCBI nr
Match: gi|449435726|ref|XP_004135645.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 118/142 (83.10%), Postives = 129/142 (90.85%), Query Frame = 1 

Query: 11  MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70
           MSST   TKGGRGK  A K+VSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 71  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130
           LEYL AEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 131 LLPKKAGNAKDKAEIGSASQEF 153
           LLPKK G  KDK +IGSASQEF
Sbjct: 121 LLPKKVG--KDKGDIGSASQEF 140

[Close]
BLAST of Cp4.1LG12g05210 vs. NCBI nr
Match: gi|593798658|ref|XP_007162367.1| (hypothetical protein PHAVU_001G146100g [Phaseolus vulgaris])

HSP 1 Score: 226.5 bits (576), Expect = 3.2e-56
Identity = 123/145 (84.83%), Postives = 129/145 (88.97%), Query Frame = 1 

Query: 11  MSSTDVPT---KGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 70
           MSST+V T   KGGRGK    K+VSRS KAGLQFPVGRIARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60

Query: 71  SAVLEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 130
           SAVLEYL AEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  SAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 131 HQSLLPKKAGNAKDKAEIGSASQEF 153
           HQ+LLPKK G  K K EIGSASQEF
Sbjct: 121 HQNLLPKKTG--KGKGEIGSASQEF 143

[Close]
BLAST of Cp4.1LG12g05210 vs. NCBI nr
Match: gi|728836341|gb|KHG15784.1| (hypothetical protein F383_22140 [Gossypium arboreum])

HSP 1 Score: 226.5 bits (576), Expect = 3.2e-56
Identity = 118/142 (83.10%), Postives = 129/142 (90.85%), Query Frame = 1 

Query: 11  MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70
           MSST   TKGGRGK  A+K+VSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 71  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130
           LEYL AEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 131 LLPKKAGNAKDKAEIGSASQEF 153
           LLPKK G  KDK EIGSASQEF
Sbjct: 121 LLPKKMG--KDKGEIGSASQEF 140

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g05210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2AX_CICAR9.2e-5681.69Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ORYSJ3.5e-5582.71Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1[more]
H2AXB_ORYSI3.5e-5582.71Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1[more]
H2AX_PICAB7.8e-5582.09Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXA_ARATH1.7e-5481.48Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1[more]
BLAST of Cp4.1LG12g05210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K525_CUCSA1.8e-6695.07Histone H2A OS=Cucumis sativus GN=Csa_7G390240 PE=3 SV=1[more]
A0A0A0LW51_CUCSA9.9e-5783.10Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1[more]
A0A0B0NVE5_GOSAR2.2e-5683.10Histone H2A OS=Gossypium arboreum GN=F383_22140 PE=3 SV=1[more]
V7CZN0_PHAVU2.2e-5684.83Histone H2A OS=Phaseolus vulgaris GN=PHAVU_001G146100g PE=3 SV=1[more]
A0A0S3RXP1_PHAAN3.8e-5684.14Histone H2A OS=Vigna angularis var. angularis GN=Vigan.04G292000 PE=3 SV=1[more]
BLAST of Cp4.1LG12g05210 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08880.19.8e-5681.48 Histone superfamily protein[more]
AT1G54690.11.3e-5581.48 gamma histone variant H2AX[more]
AT1G51060.16.8e-4978.13 histone H2A 10[more]
AT4G27230.13.4e-4876.56 histone H2A 2[more]
AT5G54640.19.8e-4876.56 Histone superfamily protein[more]
BLAST of Cp4.1LG12g05210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462306|ref|XP_004148882.1|2.6e-6695.07PREDICTED: histone H2AX-like [Cucumis sativus][more]
gi|659101083|ref|XP_008451416.1|5.8e-6694.37PREDICTED: histone H2AX-like [Cucumis melo][more]
gi|449435726|ref|XP_004135645.1|1.4e-5683.10PREDICTED: histone H2AX [Cucumis sativus][more]
gi|593798658|ref|XP_007162367.1|3.2e-5684.83hypothetical protein PHAVU_001G146100g [Phaseolus vulgaris][more]
gi|728836341|gb|KHG15784.1|3.2e-5683.10hypothetical protein F383_22140 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR002119Histone_H2A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g05210.1Cp4.1LG12g05210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 115..133
score: 3.5E-49coord: 73..86
score: 3.5E-49coord: 29..51
score: 3.5E-49coord: 87..101
score: 3.5E-49coord: 58..73
score: 3.5
IPR002119Histone H2ASMARTSM00414h2a4coord: 18..138
score: 1.8
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 9..104
score: 7.8
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 21..137
score: 5.0
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 32..135
score: 2.84
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 17..152
score: 4.6E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g05210Cucumber (Chinese Long) v3cpecucB0183
Cp4.1LG12g05210Cucumber (Chinese Long) v3cpecucB0186
Cp4.1LG12g05210Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g05210Wax gourdcpewgoB0203
Cp4.1LG12g05210Wax gourdcpewgoB0205
Cp4.1LG12g05210Cucurbita pepo (Zucchini)cpecpeB152
Cp4.1LG12g05210Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g05210Cucumber (Gy14) v1cgycpeB0150
Cp4.1LG12g05210Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g05210Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g05210Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g05210Cucurbita moschata (Rifu)cmocpeB336
Cp4.1LG12g05210Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g05210Wild cucumber (PI 183967)cpecpiB160
Cp4.1LG12g05210Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g05210Cucumber (Chinese Long) v2cpecuB158
Cp4.1LG12g05210Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g05210Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g05210Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g05210Watermelon (97103) v1cpewmB131
Cp4.1LG12g05210Watermelon (97103) v1cpewmB132
Cp4.1LG12g05210Melon (DHL92) v3.5.1cpemeB124
Cp4.1LG12g05210Cucumber (Gy14) v2cgybcpeB901
Cp4.1LG12g05210Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g05210Melon (DHL92) v3.6.1cpemedB151
Cp4.1LG12g05210Melon (DHL92) v3.6.1cpemedB154
Cp4.1LG12g05210Silver-seed gourdcarcpeB0158
Cp4.1LG12g05210Silver-seed gourdcarcpeB0159
Cp4.1LG12g05210Silver-seed gourdcarcpeB1198
Cp4.1LG12g05210Silver-seed gourdcarcpeB1199