Cp4.1LG12g04540 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g04540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 4055207 .. 4055611 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCCACTCGCAAAAAGAAGCATTGGAAAGGCAGAAGAAAAAGCATAAAATAAAATAAAATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGGTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGCCGCTGGTATGCTCTTTTCCTTTTTAAATCATTTTTATTTTCTCTTAATAATTAATTGATTGATTGATTATTGTATTTGTATTTGTTTCACAGATAAGCTACACATCAAAGTGAAGAACTGA

mRNA sequence

TCATCCACTCGCAAAAAGAAGCATTGGAAAGGCAGAAGAAAAAGCATAAAATAAAATAAAATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGGTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGCCGCTGATAAGCTACACATCAAAGTGAAGAACTGA

Coding sequence (CDS)

ATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCATTGTGGTGGTGGGTGCATTGCAGGTTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGCCGCTGATAAGCTACACATCAAAGTGAAGAACTGA

Protein sequence

MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCDEKEAADKLHIKVKN
Homology
[Close]
BLAST of Cp4.1LG12g04540 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-08
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 38 EAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCDEKEAADKL-HIKVKN 86
          EA+++ CY+ C KEC +KGNG +FCE+KCD DC  K+  +KL + K KN
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKLENYKPKN 50

[Close]
BLAST of Cp4.1LG12g04540 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-22
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 3  KKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+CIVV+ AL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKEAADKLHIKVKN 86
          CEVKCDEDC EKE+ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]
BLAST of Cp4.1LG12g04540 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-22
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MA KMIA+ L+CIVVV ALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+GQS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCDEKEAADKLHIKV 84
          +CEVKCDEDCDEKEAADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of Cp4.1LG12g04540 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-22
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+ VLL+CIV++  L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCDEKEAADKLHIKV 84
          S+CEVKCDEDCDEKE ADKLH++V
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

[Close]
BLAST of Cp4.1LG12g04540 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-21
Identity = 58/84 (69.05%), Postives = 65/84 (77.38%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+AV L+CIVVV  LQ   A E     KYEAKF+AKY+ CYE CEKECL    NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKEAADKLHIKV 84
          SFCEVKCDEDC EKEAADKLHI++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

[Close]
BLAST of Cp4.1LG12g04540 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.9e-21
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKM+AV L+CIVVV +LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCDEKEAADKLHI 82
          +CEVKCDEDC  KEAADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of Cp4.1LG12g04540 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-24
Identity = 58/83 (69.88%), Postives = 72/83 (86.75%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKMIA+ L+CIVVV ALQ +SA +  + AKYEAKF+AKY+ C++ CEKECLE G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKEAADKLHIKV 84
          +CEVKCDEDC+EKE ADKLHI++
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]
BLAST of Cp4.1LG12g04540 vs. NCBI nr
Match: gi|700191315|gb|KGN46519.1| (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-22
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 3  KKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+CIVV+ AL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKEAADKLHIKVKN 86
          CEVKCDEDC EKE+ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]
BLAST of Cp4.1LG12g04540 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-22
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MA KMIA+ L+CIVVV ALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+GQS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCDEKEAADKLHIKV 84
          +CEVKCDEDCDEKEAADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of Cp4.1LG12g04540 vs. NCBI nr
Match: gi|700191282|gb|KGN46486.1| (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-22
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+ VLL+CIV++  L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCDEKEAADKLHIKV 84
          S+CEVKCDEDCDEKE ADKLH++V
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

[Close]
BLAST of Cp4.1LG12g04540 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 3.2e-21
Identity = 58/84 (69.05%), Postives = 65/84 (77.38%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+AV L+CIVVV  LQ   A E     KYEAKF+AKY+ CYE CEKECL    NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKEAADKLHIKV 84
          SFCEVKCDEDC EKEAADKLHI++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g04540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALL6_OLEEU6.8e-0853.06Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1[more]
BLAST of Cp4.1LG12g04540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCI6_CUCSA1.5e-2269.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1[more]
A0A0A0KPA7_CUCSA2.0e-2269.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
A0A0A0KFH6_CUCSA3.4e-2265.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1[more]
A0A0A0K9Z9_CUCSA2.2e-2169.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
A0A0A0KDP7_CUCSA4.9e-2165.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
BLAST of Cp4.1LG12g04540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g04540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114221|ref|XP_008456958.1|6.8e-2469.88PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|700191315|gb|KGN46519.1|2.2e-2269.05hypothetical protein Csa_6G106710 [Cucumis sativus][more]
gi|449457470|ref|XP_004146471.1|2.9e-2269.88PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|700191282|gb|KGN46486.1|4.9e-2265.48hypothetical protein Csa_6G102480 [Cucumis sativus][more]
gi|700191316|gb|KGN46520.1|3.2e-2169.05hypothetical protein Csa_6G106720 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g04540.1Cp4.1LG12g04540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 39..81
score: 1.5
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 44..80
score: 5.3
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 38..79
score: 1.96
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..85
score: 5.6
NoneNo IPR availablePANTHERPTHR35632:SF1SUBFAMILY NOT NAMEDcoord: 1..85
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g04540Cucumber (Chinese Long) v3cpecucB0173
Cp4.1LG12g04540Wax gourdcpewgoB0174
Cp4.1LG12g04540Cucurbita pepo (Zucchini)cpecpeB163
Cp4.1LG12g04540Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g04540Cucurbita maxima (Rimu)cmacpeB898
Cp4.1LG12g04540Cucurbita maxima (Rimu)cmacpeB906
Cp4.1LG12g04540Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g04540Cucurbita moschata (Rifu)cmocpeB836
Cp4.1LG12g04540Cucurbita moschata (Rifu)cmocpeB842
Cp4.1LG12g04540Wild cucumber (PI 183967)cpecpiB151
Cp4.1LG12g04540Cucumber (Chinese Long) v2cpecuB149
Cp4.1LG12g04540Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g04540Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g04540Watermelon (97103) v1cpewmB155
Cp4.1LG12g04540Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g04540Cucumber (Gy14) v2cgybcpeB729
Cp4.1LG12g04540Cucumber (Gy14) v2cgybcpeB732
Cp4.1LG12g04540Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g04540Silver-seed gourdcarcpeB0117