Cp4.1LG12g03610 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g03610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAT hook motif DNA-binding family protein
LocationCp4.1LG12 : 2579477 .. 2582436 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGGCGGGATCCGATGGCGTTATCTGGGTCACAATCTTTCTATATACAGAGGGGAATGAGTAACTCTGGCTCTGGAGGACAGGGTTTGCGTTCCTCTCCTAACCCAAATGTGGCATTTCAGACCAACACTGGTGGCAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCCTTTCACCTTATGGTGGCAATGTTGGAGCTCAATCTGGTGGAATGATTGGTAGCGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTTTCTCCTTCCCCTTCTGCTGTGAATCAAGCCATTGTAGGTTCTTCACCGAAGCGGGGAAGGGGTCGCCCGCCTGGCTCGGGAAAGAAGCAACAATTGGCTTCTCTTGGTATGGTTTTCTTGAATCCTTTTGCTACTTTATCACAATAGATTTCTTGTAGCAATAATGGTTTGATTGTTTACTTGTTTAATACAATGTTTGAAAATTGTCTTTCATGAACAATTTCTATGTTTGTCTTTGCATTATAGCTTTGCTCTTTCCCTTTTAGGCTTAAAAATCTATGTAGATTGCTATACTTTCATTTGGTCCCTTAACTTTCATCTAGGTAGATCTAAGCATAATGTGTTGTGGCTATGTTTAGCAACTTACAATTATCGAACTTGTTTCTCAAACAGTTTCCTAAAGGTGTTTAGATTTGAGATCCCACATCGGTTCGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATACGTTTTAAAACCTTGAGGGGAAAACCCAAAGAGGACAATATCTACTAGCGGTAGGCTTGGGCTGTTACACATGTATCAGAGCTAGACACCGGGCGATGTGTCACCGAGGAGGCTGAACCCCGAAGGGAGGTGGACAAGAGGTGGTGTGCCACCAAGGACGCTGGGCCCTGAGGGGGGTGGATTGGGGGGGTCCCACATCGATTGGAGAAGGATACGAGTGCCAGTGAGGATGGGGCCCTGAGGGGGGTGGATTGGGGGGGTCCCACATCGATTGGAGAAGGATATGAGTGCCATCGGGGAAGCCTGGATGGGAAAGCCCAAAGAGGACAATATCGGCTAGCGGTGGGCTTGGGCTGTTACAAATGTATCAAAGCTAGACACCGGGCAATGTGTCATTGAGGAGGTTGAGCCCTGAAGGGAGATGGACAAGAGGTGGTGTGCTAGCAAGGATGCTGGGCCCTAAGGGGGTACATTGGGGGGTCCCACATCGGTAGGAGAAGGAAATGAGTGCTAGTGAGGACGCTGGGCCCTGAAGGGGGTGGATTATGAGATCCCACCTCGGTTGGTGAGGAGAACGAAACACTCCTTATAAGGGTGTGAAAACCTCTCCCTAATAGACACGTTTTAAAACCTTGAGGGGAAAGCCCAAAGAGGACAAGATCTGCTAGCGGTGGGCTTGGGCTTGGGCTGTTACATTGGAACGGCCCATAATTTGTCTCTTGTTTGGAACGGTGCAAGCTTATCGTGCAAGCTCGAATGAATCGGAAGCATATTAACTCAATGGGTTCCAATTTTGTGCAGGTGAAACACTTTCTGGGTCAGCTGGGATGGGTTTTACTCCACATGTTATCACCATTGGAGTAGGAGAAGTATGTTGAAGCATCTGTTTATTTCATGGCTAATTTATGACAAAATGTCTATAATTTTCATCTGGGAATTGTGTATGTAGGATATTGCTGCCAAAATTACGTCGTTTTCGCAGCAGGGACCGAGAGTTGTCTGCATCTTGTCAGCAAATGGTGCTGTCTCTACTGTTACTCTTCGTCAGCCTTCGAGTTCGGGAGGCACCGTCACGTACGAGGTTTGTCTCATCACCTGTGTTAACGTCGTTGATTAAGCACTCTGTAGATCTTTGACTTGTTATGAAGAAAATGTAATCACGGGACAACTATTTGAGCTCGTAACGTTTGGTTGTGAAGAAACTCGTAGGATTTTAATATCTTAGGTGACTATCGTGAGATTTAGACGCTAGGGGGAGGGTATTGATCATTTTTTCCTCACCTCTCTCGTTTGAACGTATCGTATTACTATAGCAACTTTGACGAGCATCATTTGTTATCCGTAGGGGCGTTTTGAGATAATATGTCTAGCAGGCTCATATGCTCTTGGAGAAGCTGTTGGTTCTAGGAACCGCAGTGGTGGTCTGAGTGTCTCCCTTGCCAGCCCTGATGGTCGTGTCGTTGGTGGCGGAGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTAGCTTCTTGGTTTACGTCGGAATACTATAATCAAACTACTGCACACGGAGTCCTCGAATTCCTCGAATAGTCGTCTAGTTTTACGGATGAATTGAAACATGAATTTGTAGGTGATCGTAGGGAGCTTCATGTGGGGTGGTTCGAAGTCGAAGTACAAGAAGAGGGAAGCTATTGAAGGCGTGATCGACTCGGATCAACAGGCAGTAGATCATGCAGTTGCTATAGCAAACGTGCAGCAGAATCAGAATCTGACATCGACATCCTCGGTTAGTATGTGGCCGTCCTCACAGTCTTTGGACATGCGCAATGCCCATATCGACATTGATCTGATGCGCGGGTGAGCGAGCGAGTGAAGTTTAGTCGTAAATTTTCACACTGGTCTTGTTAGATTACTTGTGAAATTTGTAGGTTAAGTGGGATTGAGTTTGGATTTATGTTGGTCTTGTTAGATTATTATTGACATTCTAATTTGTAGTTTATGTTTTTTTTTTTCATGTTAACCAATGAAAACAAAAATTGTGTCTGATTTAAATCTCCCTTGGTCTTTGTTTCTATAATGTTCCGCCTTTTCGTCTAGGTCGGGCTCTCGGAGAAGAGTCGAATAAGAGTCGTTTTAGTATGAAAGTACTTGAAATTTACGGGGATATCGTAATGTTT

mRNA sequence

ATGGATCGGCGGGATCCGATGGCGTTATCTGGGTCACAATCTTTCTATATACAGAGGGGAATGAGTAACTCTGGCTCTGGAGGACAGGGTTTGCGTTCCTCTCCTAACCCAAATGTGGCATTTCAGACCAACACTGGTGGCAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCCTTTCACCTTATGGTGGCAATGTTGGAGCTCAATCTGGTGGAATGATTGGTAGCGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTTTCTCCTTCCCCTTCTGCTGTGAATCAAGCCATTGTAGGTTCTTCACCGAAGCGGGGAAGGGGTCGCCCGCCTGGCTCGGGAAAGAAGCAACAATTGGCTTCTCTTGGTATGGTGATCGTAGGGAGCTTCATGTGGGGTGGTTCGAAGTCGAAGTACAAGAAGAGGGAAGCTATTGAAGGCGTGATCGACTCGGATCAACAGGCAGTAGATCATGCAGTTGCTATAGCAAACGTGCAGCAGAATCAGAATCTGACATCGACATCCTCGGTTAGTATGTGGCCGTCCTCACAGTCTTTGGACATGCGCAATGCCCATATCGACATTGATCTGATGCGCGGGTGAGCGAGCGAGTGAAGTTTAGTCGTAAATTTTCACACTGGTCTTGTTAGATTACTTGTGAAATTTGTAGGTTAAGTGGGATTGAGTTTGGATTTATGTTGGTCTTGTTAGATTATTATTGACATTCTAATTTGTAGTTTATGTTTTTTTTTTTCATGTTAACCAATGAAAACAAAAATTGTGTCTGATTTAAATCTCCCTTGGTCTTTGTTTCTATAATGTTCCGCCTTTTCGTCTAGGTCGGGCTCTCGGAGAAGAGTCGAATAAGAGTCGTTTTAGTATGAAAGTACTTGAAATTTACGGGGATATCGTAATGTTT

Coding sequence (CDS)

ATGGATCGGCGGGATCCGATGGCGTTATCTGGGTCACAATCTTTCTATATACAGAGGGGAATGAGTAACTCTGGCTCTGGAGGACAGGGTTTGCGTTCCTCTCCTAACCCAAATGTGGCATTTCAGACCAACACTGGTGGCAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCCTTTCACCTTATGGTGGCAATGTTGGAGCTCAATCTGGTGGAATGATTGGTAGCGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTTTCTCCTTCCCCTTCTGCTGTGAATCAAGCCATTGTAGGTTCTTCACCGAAGCGGGGAAGGGGTCGCCCGCCTGGCTCGGGAAAGAAGCAACAATTGGCTTCTCTTGGTATGGTGATCGTAGGGAGCTTCATGTGGGGTGGTTCGAAGTCGAAGTACAAGAAGAGGGAAGCTATTGAAGGCGTGATCGACTCGGATCAACAGGCAGTAGATCATGCAGTTGCTATAGCAAACGTGCAGCAGAATCAGAATCTGACATCGACATCCTCGGTTAGTATGTGGCCGTCCTCACAGTCTTTGGACATGCGCAATGCCCATATCGACATTGATCTGATGCGCGGGTGA

Protein sequence

MDRRDPMALSGSQSFYIQRGMSNSGSGGQGLRSSPNPNVAFQTNTGGNNVGSGLPMDPNPALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQAIVGSSPKRGRGRPPGSGKKQQLASLGMVIVGSFMWGGSKSKYKKREAIEGVIDSDQQAVDHAVAIANVQQNQNLTSTSSVSMWPSSQSLDMRNAHIDIDLMRG
Homology
[Close]
BLAST of Cp4.1LG12g03610 vs. Swiss-Prot
Match: AHL9_ARATH (AT-hook motif nuclear-localized protein 9 OS=Arabidopsis thaliana GN=AHL9 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22
Identity = 77/163 (47.24%), Postives = 95/163 (58.28%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSG--------SGGQGLRSSPNPNVAFQTNTGGNNVGS 60
           MDRRD M LSGS S+YI RG+S SG           QGLR  PN N  F    G  + G 
Sbjct: 1   MDRRDAMGLSGSGSYYIHRGLSGSGPPTFHGSPQQQQGLRHLPNQNSPF----GSGSTGF 60

Query: 61  GLP-MDPNPALSPYGGNVGAQSG----GMIG------SEPVKRKRGRPRKYGTEGTVSLA 120
           G P +  +P+L+   G  GA        MI         P+KRKRGRPRKYG +G+VSLA
Sbjct: 61  GSPSLHGDPSLATAAGGAGALPHHIGVNMIAPPPPPSETPMKRKRGRPRKYGQDGSVSLA 120

Query: 121 LSPSPSAVNQAIVGSSPKRGRGRPPGSGKKQQLASLGMVIVGS 145
           LS S  +V+     +S KRGRGRPPGSGKKQ++AS+G ++  S
Sbjct: 121 LSSS--SVSTITPNNSNKRGRGRPPGSGKKQRMASVGELMPSS 157

[Close]
BLAST of Cp4.1LG12g03610 vs. Swiss-Prot
Match: AHL11_ARATH (AT-hook motif nuclear-localized protein 11 OS=Arabidopsis thaliana GN=AHL11 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.2e-22
Identity = 82/168 (48.81%), Postives = 97/168 (57.74%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSGS----------GGQGLR----------SSPNPNVA 60
           MDRRD MALSGS S+YIQRG+  SG           G QG            S+PNPN  
Sbjct: 1   MDRRDAMALSGSGSYYIQRGIPGSGPPPPQTQPTFHGSQGFHHFTNSISPFGSNPNPN-- 60

Query: 61  FQTNTGGNNVG---SGLPMDPNPALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEG- 120
              N GG + G     LP+D +PA S      GA      G   VKRKRGRPRKYG +G 
Sbjct: 61  --PNPGGVSTGFVSPPLPVDSSPADSSAAA-AGALVAPPSGDTSVKRKRGRPRKYGQDGG 120

Query: 121 TVSLALSPSPSAVNQAIVGSSPKRGRGRPPGSGKKQQLASLGMVIVGS 145
           +VSLALSPS S V+     +S KRGRGRPPGSGKKQ+L+S+G ++  S
Sbjct: 121 SVSLALSPSISNVSP----NSNKRGRGRPPGSGKKQRLSSIGEMMPSS 159

[Close]
BLAST of Cp4.1LG12g03610 vs. Swiss-Prot
Match: AHL5_ARATH (AT-hook motif nuclear-localized protein 5 OS=Arabidopsis thaliana GN=AHL5 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-10
Identity = 60/170 (35.29%), Postives = 83/170 (48.82%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQS-FYIQRGMSNSGSGGQ------------GLRSSPNPNVAFQTNTGG 60
           MD R+ MA  GS S FY+QRG+  + +  Q            G+R   NPN+    +   
Sbjct: 1   MDGREAMAFPGSHSQFYLQRGVFTNLTPSQVASGLHAPPPPPGMRPMSNPNIH---HPQA 60

Query: 61  NNVGSGLPMDPNPALSPYGGNVGAQSGGMIGSEP-------------VKRKRGRPRKYGT 120
           +N G    M  +   S +G ++          +P             VK+KRGRPRKY  
Sbjct: 61  SNPGPPFSMAEHRH-SDFGHSIHMGMASPAAVQPTLQLPPPPSEQPMVKKKRGRPRKYVP 120

Query: 121 EGTVSLALSPSPSAVNQAIVGS------SPKRGRGRPPGSGKKQQLASLG 139
           +G VSL LSP P    ++   S      +PKR RGRPPG+G+KQ+LA+LG
Sbjct: 121 DGQVSLGLSPMPCVSKKSKDSSSMSDPNAPKRARGRPPGTGRKQRLANLG 166

[Close]
BLAST of Cp4.1LG12g03610 vs. Swiss-Prot
Match: AHL12_ARATH (AT-hook motif nuclear-localized protein 12 OS=Arabidopsis thaliana GN=AHL12 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.2e-09
Identity = 59/165 (35.76%), Postives = 77/165 (46.67%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQS-FYIQRGMSNSGSGGQ------------GLRSSPNPNVAFQTNTGG 60
           MD R+ MA  GS S +Y+QRG   + +  Q            GLR   NPN+    +   
Sbjct: 1   MDGREAMAFPGSHSQYYLQRGAFTNLAPSQVASGLHAPPPHTGLRPMSNPNIH---HPQA 60

Query: 61  NNVGSGLPMDPNPALSPYG-----GNVGAQSGGMIGSEP---------VKRKRGRPRKYG 120
           NN        P P  S +G     G V + S   +   P         VKRKRGRPRKYG
Sbjct: 61  NN--------PGPPFSDFGHTIHMGVVSSASDADVQPPPPPPPPEEPMVKRKRGRPRKYG 120

Query: 121 TEGTVSLALSPSPSAVNQAIVGSSPKRGRGRPPGSGKKQQLASLG 139
                + +   SP +       + PKR RGRPPG+G+KQ+LA+LG
Sbjct: 121 EPMVSNKSRDSSPMSDP-----NEPKRARGRPPGTGRKQRLANLG 149

[Close]
BLAST of Cp4.1LG12g03610 vs. Swiss-Prot
Match: AHL10_ARATH (AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana GN=AHL10 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 1 

Query: 19  RGMSNSGSGGQGLRSSP----NPNVAFQTNTGGNN--VGSGLPMDPNPALSPYGGNVGAQ 78
           R +S  G  G  L   P    +P   +Q N+ G N  +   LP              G +
Sbjct: 39  RPLSFGGDDGTALYKQPMRSVSPPQQYQPNSAGENSVLNMNLP--------------GGE 98

Query: 79  SGGMIG--SEPVKRKRGRPRKYGTE-GTVSLALSP-SPS-AVNQ-AIVGSSPKRGRGRPP 138
           SGGM G  SEPVK++RGRPRKYG + G +SL L+P +PS  V+Q +  G   ++ RGRPP
Sbjct: 99  SGGMTGTGSEPVKKRRGRPRKYGPDSGEMSLGLNPGAPSFTVSQPSSGGDGGEKKRGRPP 158

Query: 139 GSGKKQ-QLASLGMVIVG 144
           GS  K+ +L +LG   +G
Sbjct: 159 GSSSKRLKLQALGSTGIG 162

[Close]
BLAST of Cp4.1LG12g03610 vs. TrEMBL
Match: A0A0A0K9X6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003410 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.8e-62
Identity = 126/144 (87.50%), Postives = 132/144 (91.67%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSGSGGQGLRSSPNPNVAFQTNTGGNNVGSGLPMDPNP 60
           MDRRDPMALSGSQSFY+QRG+SNSGSG QGLRSS NPNVAFQTNTGGNNVGSGLPMDPN 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNS 60

Query: 61  ALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQAIVGSSPKR 120
            +SPYGGNVGAQSGG++ SEPVKRKRGRPRKYGTEGTVSLALSPSPSAVN A V SSPKR
Sbjct: 61  GISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKR 120

Query: 121 GRGRPPGSGKKQQLASLGMVIVGS 145
           GRGRPPGSGKKQQLASL   + GS
Sbjct: 121 GRGRPPGSGKKQQLASLCETLSGS 144

[Close]
BLAST of Cp4.1LG12g03610 vs. TrEMBL
Match: M5X094_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008388mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.5e-39
Identity = 93/145 (64.14%), Postives = 112/145 (77.24%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSG-SGGQGLRSSPNPNVAFQTNTGGNNVGSGLPMDPN 60
           MDRRDPMALSGS S++  RG++ SG  G QG+    NPN AFQ+N GG N+GS LP++P+
Sbjct: 1   MDRRDPMALSGSASYFTSRGLTQSGLHGSQGIHPLSNPNTAFQSNLGGGNIGSALPIEPS 60

Query: 61  PALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQAIVGSSPK 120
             ++P+G NVG  S  +   EPVKRKRGRPRKYG +GTVSLALSPS SA N  +V S+PK
Sbjct: 61  SGITPHGVNVGVPS-MLPPGEPVKRKRGRPRKYGPDGTVSLALSPSSSA-NPGMVTSTPK 120

Query: 121 RGRGRPPGSGKKQQLASLGMVIVGS 145
           RGRGRPPGSGKKQQLASLG ++ GS
Sbjct: 121 RGRGRPPGSGKKQQLASLGELLSGS 143

[Close]
BLAST of Cp4.1LG12g03610 vs. TrEMBL
Match: W9S3E4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017300 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-35
Identity = 90/152 (59.21%), Postives = 111/152 (73.03%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSGSGGQ-------GLRSSPNPNVAFQTNTGGNNVGSG 60
           MDRRDPMALSGS S+Y QRG+  SGSG Q       G+    NPNV+FQ+N GG+ +GS 
Sbjct: 1   MDRRDPMALSGSASYYTQRGIVVSGSGAQPELHGSAGIHPLSNPNVSFQSNMGGSTMGST 60

Query: 61  LPMDPNPALSPYGGNVGAQSGGMIGS-EPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQA 120
           LP++P+  +S +G NVG     +  S EPVKRKRGRPRKYG +G+VSLALSP+P A N  
Sbjct: 61  LPVEPSSGISSHGVNVGGTPMVVPSSGEPVKRKRGRPRKYGPDGSVSLALSPAP-ATNPG 120

Query: 121 IVGSSPKRGRGRPPGSGKKQQLASLGMVIVGS 145
           +V ++PKR RGRPPG+GKKQQLASLG  + GS
Sbjct: 121 VVTTTPKRSRGRPPGTGKKQQLASLGEWLSGS 151

[Close]
BLAST of Cp4.1LG12g03610 vs. TrEMBL
Match: D7UC79_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02930 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.5e-34
Identity = 87/154 (56.49%), Postives = 109/154 (70.78%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSGSGG---------QGLRSSPNPNVAFQTNTGGN-NV 60
           MDRRD MA+ GS S+Y+QRGM+ SGSG           G+RS  NP++ FQ N GG  ++
Sbjct: 1   MDRRDAMAMPGSGSYYMQRGMAGSGSGSGPQPGLHGSPGIRSLSNPSMPFQPNIGGGGSM 60

Query: 61  GSGLPMDPNPALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVN 120
           GS LP++P+  +S +G NVGA S  +  SEPVKRKRGRPRKYG +GTVSLALSPS +   
Sbjct: 61  GSTLPVEPSSVISTHGVNVGAPSTLLPPSEPVKRKRGRPRKYGPDGTVSLALSPSSATSP 120

Query: 121 QAIVGSSPKRGRGRPPGSGKKQQLASLGMVIVGS 145
             +  S+ KRGRGRPPG+G+KQQLASLG  + GS
Sbjct: 121 GTLTASTQKRGRGRPPGTGRKQQLASLGEWLSGS 154

[Close]
BLAST of Cp4.1LG12g03610 vs. TrEMBL
Match: B9RDQ4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1615060 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33
Identity = 87/151 (57.62%), Postives = 107/151 (70.86%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSGSGGQ-------GLRSSPNPNVAFQTNTGGNNVGSG 60
           MDRRD MA+SGS SFY+QRGM+ SGSG Q       G+    + NV+FQ+N G N +GS 
Sbjct: 1   MDRRDAMAMSGSASFYMQRGMTGSGSGTQSGLNVSSGINPLTSTNVSFQSNVGANTIGST 60

Query: 61  LPMDPNPALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQAI 120
           LP++ + A+ P+G NVGA S      EPVKRKRGRPRKYG +GTVSLALSPS S  +   
Sbjct: 61  LPLETSTAIPPHGVNVGASSLMPPPGEPVKRKRGRPRKYGPDGTVSLALSPSLS-THPGT 120

Query: 121 VGSSPKRGRGRPPGSGKKQQLASLGMVIVGS 145
           +  + KRGRGRPPG+G+KQQLASLG  + GS
Sbjct: 121 ITPTQKRGRGRPPGTGRKQQLASLGEWLSGS 150

[Close]
BLAST of Cp4.1LG12g03610 vs. TAIR10
Match: AT2G45850.1 (AT2G45850.1 AT hook motif DNA-binding family protein)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 77/163 (47.24%), Postives = 95/163 (58.28%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSG--------SGGQGLRSSPNPNVAFQTNTGGNNVGS 60
           MDRRD M LSGS S+YI RG+S SG           QGLR  PN N  F    G  + G 
Sbjct: 1   MDRRDAMGLSGSGSYYIHRGLSGSGPPTFHGSPQQQQGLRHLPNQNSPF----GSGSTGF 60

Query: 61  GLP-MDPNPALSPYGGNVGAQSG----GMIG------SEPVKRKRGRPRKYGTEGTVSLA 120
           G P +  +P+L+   G  GA        MI         P+KRKRGRPRKYG +G+VSLA
Sbjct: 61  GSPSLHGDPSLATAAGGAGALPHHIGVNMIAPPPPPSETPMKRKRGRPRKYGQDGSVSLA 120

Query: 121 LSPSPSAVNQAIVGSSPKRGRGRPPGSGKKQQLASLGMVIVGS 145
           LS S  +V+     +S KRGRGRPPGSGKKQ++AS+G ++  S
Sbjct: 121 LSSS--SVSTITPNNSNKRGRGRPPGSGKKQRMASVGELMPSS 157

[Close]
BLAST of Cp4.1LG12g03610 vs. TAIR10
Match: AT3G61310.1 (AT3G61310.1 AT hook motif DNA-binding family protein)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-23
Identity = 82/168 (48.81%), Postives = 97/168 (57.74%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSGS----------GGQGLR----------SSPNPNVA 60
           MDRRD MALSGS S+YIQRG+  SG           G QG            S+PNPN  
Sbjct: 1   MDRRDAMALSGSGSYYIQRGIPGSGPPPPQTQPTFHGSQGFHHFTNSISPFGSNPNPN-- 60

Query: 61  FQTNTGGNNVG---SGLPMDPNPALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEG- 120
              N GG + G     LP+D +PA S      GA      G   VKRKRGRPRKYG +G 
Sbjct: 61  --PNPGGVSTGFVSPPLPVDSSPADSSAAA-AGALVAPPSGDTSVKRKRGRPRKYGQDGG 120

Query: 121 TVSLALSPSPSAVNQAIVGSSPKRGRGRPPGSGKKQQLASLGMVIVGS 145
           +VSLALSPS S V+     +S KRGRGRPPGSGKKQ+L+S+G ++  S
Sbjct: 121 SVSLALSPSISNVSP----NSNKRGRGRPPGSGKKQRLSSIGEMMPSS 159

[Close]
BLAST of Cp4.1LG12g03610 vs. TAIR10
Match: AT1G63470.1 (AT1G63470.1 AT hook motif DNA-binding family protein)

HSP 1 Score: 67.8 bits (164), Expect = 9.4e-12
Identity = 60/170 (35.29%), Postives = 83/170 (48.82%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQS-FYIQRGMSNSGSGGQ------------GLRSSPNPNVAFQTNTGG 60
           MD R+ MA  GS S FY+QRG+  + +  Q            G+R   NPN+    +   
Sbjct: 1   MDGREAMAFPGSHSQFYLQRGVFTNLTPSQVASGLHAPPPPPGMRPMSNPNIH---HPQA 60

Query: 61  NNVGSGLPMDPNPALSPYGGNVGAQSGGMIGSEP-------------VKRKRGRPRKYGT 120
           +N G    M  +   S +G ++          +P             VK+KRGRPRKY  
Sbjct: 61  SNPGPPFSMAEHRH-SDFGHSIHMGMASPAAVQPTLQLPPPPSEQPMVKKKRGRPRKYVP 120

Query: 121 EGTVSLALSPSPSAVNQAIVGS------SPKRGRGRPPGSGKKQQLASLG 139
           +G VSL LSP P    ++   S      +PKR RGRPPG+G+KQ+LA+LG
Sbjct: 121 DGQVSLGLSPMPCVSKKSKDSSSMSDPNAPKRARGRPPGTGRKQRLANLG 166

[Close]
BLAST of Cp4.1LG12g03610 vs. TAIR10
Match: AT1G63480.1 (AT1G63480.1 AT hook motif DNA-binding family protein)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-10
Identity = 59/165 (35.76%), Postives = 77/165 (46.67%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQS-FYIQRGMSNSGSGGQ------------GLRSSPNPNVAFQTNTGG 60
           MD R+ MA  GS S +Y+QRG   + +  Q            GLR   NPN+    +   
Sbjct: 1   MDGREAMAFPGSHSQYYLQRGAFTNLAPSQVASGLHAPPPHTGLRPMSNPNIH---HPQA 60

Query: 61  NNVGSGLPMDPNPALSPYG-----GNVGAQSGGMIGSEP---------VKRKRGRPRKYG 120
           NN        P P  S +G     G V + S   +   P         VKRKRGRPRKYG
Sbjct: 61  NN--------PGPPFSDFGHTIHMGVVSSASDADVQPPPPPPPPEEPMVKRKRGRPRKYG 120

Query: 121 TEGTVSLALSPSPSAVNQAIVGSSPKRGRGRPPGSGKKQQLASLG 139
                + +   SP +       + PKR RGRPPG+G+KQ+LA+LG
Sbjct: 121 EPMVSNKSRDSSPMSDP-----NEPKRARGRPPGTGRKQRLANLG 149

[Close]
BLAST of Cp4.1LG12g03610 vs. TAIR10
Match: AT2G33620.1 (AT2G33620.1 AT hook motif DNA-binding family protein)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-09
Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 1 

Query: 19  RGMSNSGSGGQGLRSSP----NPNVAFQTNTGGNN--VGSGLPMDPNPALSPYGGNVGAQ 78
           R +S  G  G  L   P    +P   +Q N+ G N  +   LP              G +
Sbjct: 39  RPLSFGGDDGTALYKQPMRSVSPPQQYQPNSAGENSVLNMNLP--------------GGE 98

Query: 79  SGGMIG--SEPVKRKRGRPRKYGTE-GTVSLALSP-SPS-AVNQ-AIVGSSPKRGRGRPP 138
           SGGM G  SEPVK++RGRPRKYG + G +SL L+P +PS  V+Q +  G   ++ RGRPP
Sbjct: 99  SGGMTGTGSEPVKKRRGRPRKYGPDSGEMSLGLNPGAPSFTVSQPSSGGDGGEKKRGRPP 158

Query: 139 GSGKKQ-QLASLGMVIVG 144
           GS  K+ +L +LG   +G
Sbjct: 159 GSSSKRLKLQALGSTGIG 162

[Close]
BLAST of Cp4.1LG12g03610 vs. NCBI nr
Match: gi|449441474|ref|XP_004138507.1| (PREDICTED: AT-hook motif nuclear-localized protein 9 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 5.5e-62
Identity = 126/144 (87.50%), Postives = 132/144 (91.67%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSGSGGQGLRSSPNPNVAFQTNTGGNNVGSGLPMDPNP 60
           MDRRDPMALSGSQSFY+QRG+SNSGSG QGLRSS NPNVAFQTNTGGNNVGSGLPMDPN 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNS 60

Query: 61  ALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQAIVGSSPKR 120
            +SPYGGNVGAQSGG++ SEPVKRKRGRPRKYGTEGTVSLALSPSPSAVN A V SSPKR
Sbjct: 61  GISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKR 120

Query: 121 GRGRPPGSGKKQQLASLGMVIVGS 145
           GRGRPPGSGKKQQLASL   + GS
Sbjct: 121 GRGRPPGSGKKQQLASLCETLSGS 144

[Close]
BLAST of Cp4.1LG12g03610 vs. NCBI nr
Match: gi|659116782|ref|XP_008458256.1| (PREDICTED: uncharacterized protein LOC103497728 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 9.3e-62
Identity = 126/144 (87.50%), Postives = 132/144 (91.67%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSGSGGQGLRSSPNPNVAFQTNTGGNNVGSGLPMDPNP 60
           MDRRDPMALSGSQSFY+QRG+SNSGSG QGLRSS NPNVAFQTNTGGNNVGSGLPMDPN 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGTQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNS 60

Query: 61  ALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQAIVGSSPKR 120
            +SPYGGNVGAQSGG++ SEPVKRKRGRPRKYGTEGTVSLALSPSPSAVN A V SSPKR
Sbjct: 61  GISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKR 120

Query: 121 GRGRPPGSGKKQQLASLGMVIVGS 145
           GRGRPPGSGKKQQLASL   + GS
Sbjct: 121 GRGRPPGSGKKQQLASLCETLSGS 144

[Close]
BLAST of Cp4.1LG12g03610 vs. NCBI nr
Match: gi|645279824|ref|XP_008244908.1| (PREDICTED: uncharacterized protein LOC103343016 [Prunus mume])

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 95/145 (65.52%), Postives = 114/145 (78.62%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSG-SGGQGLRSSPNPNVAFQTNTGGNNVGSGLPMDPN 60
           MDRRDPMALSGS S++  RG++ SG  G QG+    NPN AFQ+N GG N+GS LP++P+
Sbjct: 1   MDRRDPMALSGSASYFTSRGLTQSGLHGSQGIHPLSNPNTAFQSNLGGGNIGSTLPIEPS 60

Query: 61  PALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQAIVGSSPK 120
            A++P+G NVGA S  +   EPVKRKRGRPRKYG +GTVSLALSPS SA N  +V S+PK
Sbjct: 61  SAITPHGVNVGAPS-MLPPGEPVKRKRGRPRKYGPDGTVSLALSPSSSA-NPGMVTSTPK 120

Query: 121 RGRGRPPGSGKKQQLASLGMVIVGS 145
           RGRGRPPGSGKKQQLASLG ++ GS
Sbjct: 121 RGRGRPPGSGKKQQLASLGELLSGS 143

[Close]
BLAST of Cp4.1LG12g03610 vs. NCBI nr
Match: gi|596003994|ref|XP_007218283.1| (hypothetical protein PRUPE_ppa008388mg [Prunus persica])

HSP 1 Score: 169.9 bits (429), Expect = 5.0e-39
Identity = 93/145 (64.14%), Postives = 112/145 (77.24%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSG-SGGQGLRSSPNPNVAFQTNTGGNNVGSGLPMDPN 60
           MDRRDPMALSGS S++  RG++ SG  G QG+    NPN AFQ+N GG N+GS LP++P+
Sbjct: 1   MDRRDPMALSGSASYFTSRGLTQSGLHGSQGIHPLSNPNTAFQSNLGGGNIGSALPIEPS 60

Query: 61  PALSPYGGNVGAQSGGMIGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQAIVGSSPK 120
             ++P+G NVG  S  +   EPVKRKRGRPRKYG +GTVSLALSPS SA N  +V S+PK
Sbjct: 61  SGITPHGVNVGVPS-MLPPGEPVKRKRGRPRKYGPDGTVSLALSPSSSA-NPGMVTSTPK 120

Query: 121 RGRGRPPGSGKKQQLASLGMVIVGS 145
           RGRGRPPGSGKKQQLASLG ++ GS
Sbjct: 121 RGRGRPPGSGKKQQLASLGELLSGS 143

[Close]
BLAST of Cp4.1LG12g03610 vs. NCBI nr
Match: gi|703135683|ref|XP_010105952.1| (hypothetical protein L484_017300 [Morus notabilis])

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35
Identity = 90/152 (59.21%), Postives = 111/152 (73.03%), Query Frame = 1 

Query: 1   MDRRDPMALSGSQSFYIQRGMSNSGSGGQ-------GLRSSPNPNVAFQTNTGGNNVGSG 60
           MDRRDPMALSGS S+Y QRG+  SGSG Q       G+    NPNV+FQ+N GG+ +GS 
Sbjct: 1   MDRRDPMALSGSASYYTQRGIVVSGSGAQPELHGSAGIHPLSNPNVSFQSNMGGSTMGST 60

Query: 61  LPMDPNPALSPYGGNVGAQSGGMIGS-EPVKRKRGRPRKYGTEGTVSLALSPSPSAVNQA 120
           LP++P+  +S +G NVG     +  S EPVKRKRGRPRKYG +G+VSLALSP+P A N  
Sbjct: 61  LPVEPSSGISSHGVNVGGTPMVVPSSGEPVKRKRGRPRKYGPDGSVSLALSPAP-ATNPG 120

Query: 121 IVGSSPKRGRGRPPGSGKKQQLASLGMVIVGS 145
           +V ++PKR RGRPPG+GKKQQLASLG  + GS
Sbjct: 121 VVTTTPKRSRGRPPGTGKKQQLASLGEWLSGS 151

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g03610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AHL9_ARATH1.9e-2247.24AT-hook motif nuclear-localized protein 9 OS=Arabidopsis thaliana GN=AHL9 PE=2 S... [more]
AHL11_ARATH7.2e-2248.81AT-hook motif nuclear-localized protein 11 OS=Arabidopsis thaliana GN=AHL11 PE=2... [more]
AHL5_ARATH1.7e-1035.29AT-hook motif nuclear-localized protein 5 OS=Arabidopsis thaliana GN=AHL5 PE=1 S... [more]
AHL12_ARATH9.2e-0935.76AT-hook motif nuclear-localized protein 12 OS=Arabidopsis thaliana GN=AHL12 PE=1... [more]
AHL10_ARATH1.3e-0739.13AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana GN=AHL10 PE=1... [more]
BLAST of Cp4.1LG12g03610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9X6_CUCSA3.8e-6287.50Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003410 PE=4 SV=1[more]
M5X094_PRUPE3.5e-3964.14Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008388mg PE=4 SV=1[more]
W9S3E4_9ROSA1.8e-3559.21Uncharacterized protein OS=Morus notabilis GN=L484_017300 PE=4 SV=1[more]
D7UC79_VITVI7.5e-3456.49Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02930 PE=4 SV=... [more]
B9RDQ4_RICCO1.3e-3357.62DNA binding protein, putative OS=Ricinus communis GN=RCOM_1615060 PE=4 SV=1[more]
BLAST of Cp4.1LG12g03610 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45850.11.1e-2347.24 AT hook motif DNA-binding family protein[more]
AT3G61310.14.1e-2348.81 AT hook motif DNA-binding family protein[more]
AT1G63470.19.4e-1235.29 AT hook motif DNA-binding family protein[more]
AT1G63480.15.2e-1035.76 AT hook motif DNA-binding family protein[more]
AT2G33620.17.5e-0939.13 AT hook motif DNA-binding family protein[more]
BLAST of Cp4.1LG12g03610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441474|ref|XP_004138507.1|5.5e-6287.50PREDICTED: AT-hook motif nuclear-localized protein 9 [Cucumis sativus][more]
gi|659116782|ref|XP_008458256.1|9.3e-6287.50PREDICTED: uncharacterized protein LOC103497728 [Cucumis melo][more]
gi|645279824|ref|XP_008244908.1|1.0e-3965.52PREDICTED: uncharacterized protein LOC103343016 [Prunus mume][more]
gi|596003994|ref|XP_007218283.1|5.0e-3964.14hypothetical protein PRUPE_ppa008388mg [Prunus persica][more]
gi|703135683|ref|XP_010105952.1|2.6e-3559.21hypothetical protein L484_017300 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g03610.1Cp4.1LG12g03610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 117..128
score: 4.9E-6coord: 83..93
score: 4.
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 119..131
score: 9.2coord: 83..95
score:
NoneNo IPR availablePANTHERPTHR31500FAMILY NOT NAMEDcoord: 2..144
score: 1.7
NoneNo IPR availablePANTHERPTHR31500:SF10AT HOOK MOTIF DNA-BINDING FAMILY PROTEINcoord: 2..144
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g03610Cucsa.135450Cucumber (Gy14) v1cgycpeB0359
Cp4.1LG12g03610CmaCh17G004250Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g03610CmaCh08G009120Cucurbita maxima (Rimu)cmacpeB904
Cp4.1LG12g03610CmoCh17G004040Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g03610CmoCh08G008840Cucurbita moschata (Rifu)cmocpeB840
Cp4.1LG12g03610Cla001219Watermelon (97103) v1cpewmB158
Cp4.1LG12g03610Csa6G003410Cucumber (Chinese Long) v2cpecuB141
Cp4.1LG12g03610MELO3C021218Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g03610ClCG06G003810Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g03610CSPI06G00410Wild cucumber (PI 183967)cpecpiB143
Cp4.1LG12g03610Lsi09G015580Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g03610MELO3C021218.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g03610MELO3C005668.2Melon (DHL92) v3.6.1cpemedB137
Cp4.1LG12g03610CsaV3_5G002880Cucumber (Chinese Long) v3cpecucB0164
Cp4.1LG12g03610CsaV3_6G000460Cucumber (Chinese Long) v3cpecucB0165
Cp4.1LG12g03610Bhi12G000239Wax gourdcpewgoB0179
Cp4.1LG12g03610Bhi12G001646Wax gourdcpewgoB0177
Cp4.1LG12g03610CsGy6G000470Cucumber (Gy14) v2cgybcpeB721
Cp4.1LG12g03610CsGy5G002730Cucumber (Gy14) v2cgybcpeB596
Cp4.1LG12g03610Carg05596Silver-seed gourdcarcpeB0099
Cp4.1LG12g03610Carg16640Silver-seed gourdcarcpeB1294
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g03610Cp4.1LG17g03600Cucurbita pepo (Zucchini)cpecpeB159
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g03610Watermelon (97103) v1cpewmB161