Cp4.1LG12g03500 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g03500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG12 : 2344586 .. 2347731 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCCTACTCGAACTCATCCACTTCACTGCTTGAAGCTCTGCGGAGCGAACTCCATCATCCATGGCTGCCTTCTCCTTCTCCTTCTCCTCTTCGCTCCTTCCTTCATCAGTTTCTTTCGATCATGGCTCCTCTTCCTTCTTCCCCATCCTTATTTCATCTTCTTTCGACTCCAATTCTCGCGTTGTTCGCTGTACATTTGCAGCCCCCGCTAGAAAATCGCCTCCTCCTCCTTCTTCTTCTTCTTCTTCCTCACCGGATAAGAAGAGGCACTGGAAGCAAGGGGAATTTCCAGGTATTACGGAGACATCCGCCCCCAGGATGACCCCCGCTAGAAAATCACCTCCTCCTTCTTCTTCGTCGCCGGTTAAGAAGAAGCATTGGAAACAAGGGGAATTTCCAGGCGTTACAGAGAGATTCGACGCCAGGAAGACCCCTCTCAAGAATGTCAAGAAGAAATTAGATCGCAAAATGAACGCCAAAGCTTGGGCTAACACCGTTACTGAAACCTTGTCGGAACATATCACGAACAAACGGTGGATTCAAGCTCTTGAGGTCGCTTCCTCTTCCTTTGATTTCACTTTTTGTTTTGGGGTTTTTTGTTAAATTTGTTCTGCGATCCCTCTTTTTGTTACATTTGTTCATTGTTTTGATTGATTTGAGTTTAAATCGATGAGGAATTGCATAATTTTGTAATGTGCTTTGGAATTAGCTTTTTGTCCATTTACGAACAAAGAGAAAAATGCAGAGATTCATTACTTGCTGTTCAAAGTTGAATTGGAGGCATGCAAATTCGTCTTCTCTTGCCTTAATTTGAAGGAATGAAATGATAATTTGAAGAGCCTGCATTAACTTGTTCGTGTATTGTTGTCGAGGATTATTGGGAGTGAGTCCCACATTGGCTAATTTAGGGAATGATCATGGGTTTATAAGTGAGGAATACTATCTCCATTGGTATGAGGTCTTTTGGGAAAACCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTTTGGAGAGTCATGATTCCTAATATTGTTTTCATCTTTAACAACTATGGCTGCTTCAATTCAACCGTTCAGGTGTTTGAAATGCTCCGCAAACAGCCATTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTTCTTGGAAGATCTGGCCAACCACAGCGTGCCCGTCTGCTTTTTGACACAATGGTGGAAGAAAAATGTGAACCCACCACTGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGTAACAATCTCATTGATGATGCATTTTCCATTCTTAATCTCATGAAAACCCTCCCTTGCTGCCAGCCTGATATCTACACTTATAGTATATTAATCAAGGCTTGTGTCGATTCTTCTCGCTTTGAATTAGTTGAATCTTTGTACGAGGAAATGGCCGAACGACTGATAACTCCGAACACGGTTACTCAGAATATAGTCTTAAGTGGATATGGCAAGATAGGGAAGTATGACCAGATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTAGACCAGATGTGTGGACAATGAACATAATTCTTAGTGTGTTTGGTAACAAGGGTCAGATTGAAATGATGGAAAGATGGTACGAGAAGTTTCGCAACTTCGGTATCGAGCCAGAAACACGTACATTCAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTTATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAATATGGAGTACACCTTCACGCAGATGCGTGCTGAGGGCATGAAAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATTCCAATGCAGGTCTCTTCCATAAGGTGATTGGCTCAGTTAAGTTGGCAGGAAAGTGTGAAATTCCAGAGAATACCTCATTTTATAATGCTGTTATATCTGCTTGTGCAAAGGCTGAGGATCTGATGGAAATGGATAGAGTGTTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATCATGATAGAAGCATATGAAAAGGAGGCCATGAATGACAGAGTTCATTACTTGGAACTGGAAAGGAAGCAGGTGATCGATCACGCTCCTACTAACGAGTGACTCGGAAATGGAATAGAGTGAAAAATTGGTGCACGTTTGAGAAGTTGGACGCTACACTATGCCTGTTCCACCAAGGGCTCTAGCTACATTAGATACTTCTCAGAAAATCAAATCCGCGCTTCCAGCCCTTCCAGCTCTGTGCCAAGTGTTTCACCATAGCGTTTTGATCATTTGAAATGATATGAAACCAGGCATCTCAATCATGCAATATTAATGCCACGTTAAGAAGAATTAAGTTTTGTTTATGCAACAAAGGTTAAGGGTTGGAATGTCTCATGGAAGGTTAAGGGTTTTCATTTTGAGGCTATATAAAGTCATGTATCTTATCTTTTGTAGGAGAGACTTGGAAAATGTAGTAAAATGAGCAATTTGTGCTTTCCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTGTGTAGTTTTGGTTGCATGTAGAATCATTCAAGCTTGACATGATCAATCTTGCTCGTGGAGTGATTCGAATCTCAAACAAGTGTTCTTGTCTTGAGATATTTGATCAACAAGGTAATCTGAATTTTACTTTCTCTTGCAGTGATTCTTTATTATTACAGCCAAGTGTTCTTACCTTTCCGTTGCATTTATGTATAGATTAGATTGCATGTTTAGAATCATTCAAGCTAGATATAATCGATCTTGCTTGTTGAATGATTTGAATCTCAAACAAATGTTTTTGTCTTGAAATATTCGATCAACAAAGTAATCTCAATCTTACTTCCCTTAGGTTGATTTCTTATCATTTGATATCAGAATTGTTTCTTAGGTTGATTCCTTATCATCCTCCTTCGTGTGGGAAGATTGCAGCTAACTGGTTTTTATGTCTAGAGCTCTTGTCACAGTGAAGTTGATCAGTATTTTGTAGTTATAATAGTTTTAGGCGAACTTGCTCGTTGTTCGGGACAAAACGGCGAACAGGGAAAAA

mRNA sequence

AAATCCTACTCGAACTCATCCACTTCACTGCTTGAAGCTCTGCGGAGCGAACTCCATCATCCATGGCTGCCTTCTCCTTCTCCTTCTCCTCTTCGCTCCTTCCTTCATCAGTTTCTTTCGATCATGGCTCCTCTTCCTTCTTCCCCATCCTTATTTCATCTTCTTTCGACTCCAATTCTCGCGTTGTTCGCTGTACATTTGCAGCCCCCGCTAGAAAATCGCCTCCTCCTCCTTCTTCTTCTTCTTCTTCCTCACCGGATAAGAAGAGGCACTGGAAGCAAGGGGAATTTCCAGGTATTACGGAGACATCCGCCCCCAGGATGACCCCCGCTAGAAAATCACCTCCTCCTTCTTCTTCGTCGCCGGTTAAGAAGAAGCATTGGAAACAAGGGGAATTTCCAGGCGTTACAGAGAGATTCGACGCCAGGAAGACCCCTCTCAAGAATGTCAAGAAGAAATTAGATCGCAAAATGAACGCCAAAGCTTGGGCTAACACCGTTACTGAAACCTTGTCGGAACATATCACGAACAAACGGTGGATTCAAGCTCTTGAGCTGCTTGTTCTTCTTGGAAGATCTGGCCAACCACAGCGTGCCCGTCTGCTTTTTGACACAATGGTGGAAGAAAAATGTGAACCCACCACTGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGTAACAATCTCATTGATGATGCATTTTCCATTCTTAATCTCATGAAAACCCTCCCTTGCTGCCAGCCTGATATCTACACTTATAGTATATTAATCAAGGCTTGTGTCGATTCTTCTCGCTTTGAATTAGTTGAATCTTTGTACGAGGAAATGGCCGAACGACTGATAACTCCGAACACGGTTACTCAGAATATAGTCTTAAGTGGATATGGCAAGATAGGGAAGTATGACCAGATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTAGACCAGATGTGTGGACAATGAACATAATTCTTAGTGTGTTTGGTAACAAGGGTCAGATTGAAATGATGGAAAGATGGTACGAGAAGTTTCGCAACTTCGGTATCGAGCCAGAAACACGTACATTCAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTTATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAATATGGAGTACACCTTCACGCAGATGCGTGCTGAGGGCATGAAAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATTCCAATGCAGGTCTCTTCCATAAGGTGATTGGCTCAGTTAAGTTGGCAGGAAAGTGTGAAATTCCAGAGAATACCTCATTTTATAATGCTGTTATATCTGCTTGTGCAAAGGCTGAGGATCTGATGGAAATGGATAGAGTGTTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATCATGATAGAAGCATATGAAAAGGAGGCCATGAATGACAGAGTTCATTACTTGGAACTGGAAAGGAAGCAGGCGAACTTGCTCGTTGTTCGGGACAAAACGGCGAACAGGGAAAAA

Coding sequence (CDS)

ATGGCTGCCTTCTCCTTCTCCTTCTCCTCTTCGCTCCTTCCTTCATCAGTTTCTTTCGATCATGGCTCCTCTTCCTTCTTCCCCATCCTTATTTCATCTTCTTTCGACTCCAATTCTCGCGTTGTTCGCTGTACATTTGCAGCCCCCGCTAGAAAATCGCCTCCTCCTCCTTCTTCTTCTTCTTCTTCCTCACCGGATAAGAAGAGGCACTGGAAGCAAGGGGAATTTCCAGGTATTACGGAGACATCCGCCCCCAGGATGACCCCCGCTAGAAAATCACCTCCTCCTTCTTCTTCGTCGCCGGTTAAGAAGAAGCATTGGAAACAAGGGGAATTTCCAGGCGTTACAGAGAGATTCGACGCCAGGAAGACCCCTCTCAAGAATGTCAAGAAGAAATTAGATCGCAAAATGAACGCCAAAGCTTGGGCTAACACCGTTACTGAAACCTTGTCGGAACATATCACGAACAAACGGTGGATTCAAGCTCTTGAGCTGCTTGTTCTTCTTGGAAGATCTGGCCAACCACAGCGTGCCCGTCTGCTTTTTGACACAATGGTGGAAGAAAAATGTGAACCCACCACTGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGTAACAATCTCATTGATGATGCATTTTCCATTCTTAATCTCATGAAAACCCTCCCTTGCTGCCAGCCTGATATCTACACTTATAGTATATTAATCAAGGCTTGTGTCGATTCTTCTCGCTTTGAATTAGTTGAATCTTTGTACGAGGAAATGGCCGAACGACTGATAACTCCGAACACGGTTACTCAGAATATAGTCTTAAGTGGATATGGCAAGATAGGGAAGTATGACCAGATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTAGACCAGATGTGTGGACAATGAACATAATTCTTAGTGTGTTTGGTAACAAGGGTCAGATTGAAATGATGGAAAGATGGTACGAGAAGTTTCGCAACTTCGGTATCGAGCCAGAAACACGTACATTCAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTTATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAATATGGAGTACACCTTCACGCAGATGCGTGCTGAGGGCATGAAAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATTCCAATGCAGGTCTCTTCCATAAGGTGATTGGCTCAGTTAAGTTGGCAGGAAAGTGTGAAATTCCAGAGAATACCTCATTTTATAATGCTGTTATATCTGCTTGTGCAAAGGCTGAGGATCTGATGGAAATGGATAGAGTGTTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATCATGATAGAAGCATATGAAAAGGAGGCCATGAATGACAGAGTTCATTACTTGGAACTGGAAAGGAAGCAGGCGAACTTGCTCGTTGTTCGGGACAAAACGGCGAACAGGGAAAAA

Protein sequence

MAAFSFSFSSSLLPSSVSFDHGSSSFFPILISSSFDSNSRVVRCTFAAPARKSPPPPSSSSSSSPDKKRHWKQGEFPGITETSAPRMTPARKSPPPSSSSPVKKKHWKQGEFPGVTERFDARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALELLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQANLLVVRDKTANREK
Homology
[Close]
BLAST of Cp4.1LG12g03500 vs. Swiss-Prot
Match: PP216_ARATH (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 1.1e-180
Identity = 321/467 (68.74%), Postives = 377/467 (80.73%), Query Frame = 1 

Query: 58  SSSSSSSPDKKRHWKQGEFPGITETSAPRMTPARKSPPPSSSSPVKKKHWKQGEFPGVTE 117
           S  SS  P+ KR ++  +  GI       +  A KS P    S  KK+ WK GEFPG+TE
Sbjct: 11  SLCSSRIPEGKRRFRHRDV-GIVRC----VLAASKSSP---GSVTKKRLWKDGEFPGITE 70

Query: 118 RFDARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE------------- 177
             + R+TP+KNVKKKLDR+  A  W NTVTETLS+ I  K+W+QALE             
Sbjct: 71  PVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQP 130

Query: 178 -------LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSIL 237
                  LLVLLG+SGQP RA+ LFD M+EE  EPT ELYTALLAAY R+NLIDDAFSIL
Sbjct: 131 KEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSIL 190

Query: 238 NLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGK 297
           + MK+ P CQPD++TYS L+KACVD+S+F+LV+SLY+EM ERLITPNTVTQNIVLSGYG+
Sbjct: 191 DKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGR 250

Query: 298 IGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETR 357
           +G++DQMEKVL  ML ST C+PDVWTMNIILSVFGN G+I+MME WYEKFRNFGIEPETR
Sbjct: 251 VGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETR 310

Query: 358 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQM 417
           TFNILIG+YGKKRMYDKMSSVMEYMRKL+FPWTTSTYNN+IEAFADVGDAKNME TF QM
Sbjct: 311 TFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQM 370

Query: 418 RAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDL 477
           R+EGMKADTKTFCCLINGY+NAGLFHKVI SV+LA K EIPENT+FYNAVISACAKA+DL
Sbjct: 371 RSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDL 430

Query: 478 MEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQ 505
           +EM+RV+ RMK++ C  DS+T+ IM+EAYEKE MND+++YLE ER++
Sbjct: 431 IEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQK 469

[Close]
BLAST of Cp4.1LG12g03500 vs. Swiss-Prot
Match: PP424_ARATH (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 290.8 bits (743), Expect = 2.9e-77
Identity = 159/397 (40.05%), Postives = 222/397 (55.92%), Query Frame = 1 

Query: 122 RKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE----------------- 181
           R+   K++ +K  +K + K    TV E+L E IT  RW  A++                 
Sbjct: 95  RREATKSIIEK--KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGI 154

Query: 182 ---LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMK 241
              L+V+LG+  QP++A  LF  M+ E C    E+YTAL++AY R+   D AF++L  MK
Sbjct: 155 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMK 214

Query: 242 TLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKY 301
           +   CQPD++TYSILIK+ +    F+ V+ L  +M  + I PNT+T N ++  YGK   +
Sbjct: 215 SSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMF 274

Query: 302 DQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNI 361
            +ME  L+ ML    C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNI
Sbjct: 275 VEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNI 334

Query: 362 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEG 421
           L+ +YGK   Y KMS+VMEYM+K  + WT  TYN VI+AF   GD K MEY F  M++E 
Sbjct: 335 LLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSER 394

Query: 422 MKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMD 481
           +     T C L+  Y  A    K+ G ++     +I  +  F+N ++ A  + E   EM 
Sbjct: 395 IFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMK 454

Query: 482 RVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYL 499
            V + M+ K  +PD  TY  M++AY    M   V  L
Sbjct: 455 GVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489

[Close]
BLAST of Cp4.1LG12g03500 vs. Swiss-Prot
Match: PP279_ARATH (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.1e-75
Identity = 145/394 (36.80%), Postives = 229/394 (58.12%), Query Frame = 1 

Query: 126 LKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALELLVLL---------------- 185
           +K +++K + +     W   V E L E I   RW  AL++  LL                
Sbjct: 41  VKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKL 100

Query: 186 ----GRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMKTLPC 245
               G   QP +A LLF+ M+ E  +PT ++YT+L++ Y ++ L+D AFS L  MK++  
Sbjct: 101 FKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSD 160

Query: 246 CQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQME 305
           C+PD++T+++LI  C    RF+LV+S+  EM+   +  +TVT N ++ GYGK G +++ME
Sbjct: 161 CKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEME 220

Query: 306 KVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGA 365
            VL  M+E     PDV T+N I+  +GN   +  ME WY +F+  G++P+  TFNILI +
Sbjct: 221 SVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILS 280

Query: 366 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGMKAD 425
           +GK  MY KM SVM++M K  F  TT TYN VIE F   G  + M+  F +M+ +G+K +
Sbjct: 281 FGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 340

Query: 426 TKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDRVFK 485
           + T+C L+N YS AGL  K+   ++     ++  +T F+N +I+A  +A DL  M  ++ 
Sbjct: 341 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 400

Query: 486 RMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLE 500
           +M+++ C+PD  T++ MI+ Y    + D V  LE
Sbjct: 401 QMEERKCKPDKITFATMIKTYTAHGIFDAVQELE 434

[Close]
BLAST of Cp4.1LG12g03500 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.7e-35
Identity = 95/332 (28.61%), Postives = 156/332 (46.99%), Query Frame = 1 

Query: 165 LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMKTLP 224
           LL + G+S +P+ A  + + MV     P+   Y +L++AY R+ ++D+A  + N M    
Sbjct: 320 LLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKG 379

Query: 225 CCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQM 284
             +PD++TY+ L+     + + E   S++EEM      PN  T N  +  YG  GK+ +M
Sbjct: 380 T-KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEM 439

Query: 285 EKVLLGMLESTTC--RPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL 344
            K+     E   C   PD+ T N +L+VFG  G    +   +++ +  G  PE  TFN L
Sbjct: 440 MKIFD---EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTL 499

Query: 345 IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM 404
           I AY +   +++  +V   M         STYN V+ A A  G  +  E    +M     
Sbjct: 500 ISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRC 559

Query: 405 KADTKTFCCLINGYSNA---GLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLME 464
           K +  T+C L++ Y+N    GL H +   V       I         ++  C+K + L E
Sbjct: 560 KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSG---VIEPRAVLLKTLVLVCSKCDLLPE 619

Query: 465 MDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAM 492
            +R F  +K++   PD  T + M+  Y +  M
Sbjct: 620 AERAFSELKERGFSPDITTLNSMVSIYGRRQM 644

[Close]
BLAST of Cp4.1LG12g03500 vs. Swiss-Prot
Match: PP358_ARATH (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.4e-33
Identity = 85/327 (25.99%), Postives = 153/327 (46.79%), Query Frame = 1 

Query: 164 ELLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNN----LIDDAFSILNL 223
           +L+ ++G+ GQ + A  LF  M    C P   +Y AL+ A+         ++     L+ 
Sbjct: 138 KLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDK 197

Query: 224 MKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIG 283
           MK +  CQP++ TY+IL++A   S + + V +L++++    ++P+  T N V+  YGK G
Sbjct: 198 MKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNG 257

Query: 284 KYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTF 343
              +ME VL  M  S  C+PD+ T N+++  +G K + E ME+ ++       +P   TF
Sbjct: 258 MIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTF 317

Query: 344 NILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRA 403
           N +I  YGK RM DK   V + M  + +  +  TY  +I  +   G        F ++  
Sbjct: 318 NSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGE 377

Query: 404 EGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLME 463
                   T   ++  Y   GL+ +       A    +  + S Y  +  A  KA+   +
Sbjct: 378 SDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQ 437

Query: 464 MDRVFKRMKDKHCQPDSKTYSIMIEAY 487
           +  + K+M+     P+ + +   +E +
Sbjct: 438 VQILMKKMEKDGIVPNKRFFLEALEVF 463

[Close]
BLAST of Cp4.1LG12g03500 vs. TrEMBL
Match: A0A0A0K7C8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000680 PE=4 SV=1)

HSP 1 Score: 787.7 bits (2033), Expect = 8.5e-225
Identity = 418/538 (77.70%), Postives = 437/538 (81.23%), Query Frame = 1 

Query: 5   SFSFSSSLLPSSVSFDHGSSSFFPILISSSFDS----NSRVVRCTFAAPARKSPPPPSSS 64
           SFSFSSSLLPSSVSFDH S+  FPI +SSS  S    NSR+VRC FAAP RKSP P   S
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSCSSSSHPNSRIVRCAFAAPTRKSPVP---S 62

Query: 65  SSSSPDKKRHWKQGEFPGITETSAPRMTPARKSPPPSSSSPVKKKHWKQGEFPGVTERFD 124
           +SSSP KKRHWKQGEFPG TETS  R  P ++         VKKK               
Sbjct: 63  TSSSPAKKRHWKQGEFPGTTETSTRRRAPLKR---------VKKKL-------------- 122

Query: 125 ARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE---------------- 184
                        DRK NAKAWANTVTE LS+HITNKRW+QALE                
Sbjct: 123 -------------DRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEG 182

Query: 185 ----LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLM 244
               LLVLLGRSGQP RARLLFDTMV+E+CEPT ELYTALLAAYCRNNLIDDAFS LNLM
Sbjct: 183 TYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYCRNNLIDDAFSTLNLM 242

Query: 245 KTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 304
           KTLP CQPD+YTYSILIKACVD SRFE+VESLYEEMAERLITPNTVTQNIVLSGYGKIGK
Sbjct: 243 KTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 302

Query: 305 YDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFN 364
           YDQMEKVL+GMLESTTCRPDVWTMNIILSVFGNKG IEMMERWYEKFRNFGIEPETRTFN
Sbjct: 303 YDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFN 362

Query: 365 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAE 424
           ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTF QMRAE
Sbjct: 363 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAE 422

Query: 425 GMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEM 484
           GM+ADTKTFCCLINGY+NAGLFHKVIGSVKLAGK EIPENTSFYNAVISACAKAEDLMEM
Sbjct: 423 GMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLMEM 482

Query: 485 DRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQANLLVVRDKTANRE 519
           DRVFKRMKDKHCQPD+KTYSIM+EAY KE MNDRVHYLELE+KQ     V D  +N E
Sbjct: 483 DRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLELEKKQ-----VIDNASNNE 496

[Close]
BLAST of Cp4.1LG12g03500 vs. TrEMBL
Match: A0A067K848_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19079 PE=4 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 7.8e-194
Identity = 344/478 (71.97%), Postives = 388/478 (81.17%), Query Frame = 1 

Query: 45   TFAAPARKSPPPPSSSSSSSPDKKRHWKQGEFPGITETSAPRMTPARKSPPPSSSSPVKK 104
            TFA   RK P   +S SSS   +K+HWK+GEFPGITET APR  P + + P SS    +K
Sbjct: 774  TFAP--RKQPIKNTSPSSS---EKKHWKKGEFPGITETFAPRKQPIKNTSPSSS----EK 833

Query: 105  KHWKQGEFPGVTERFDARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE 164
            KHWK+GEFPG+TE F  RK P+KN+KKKLD+K  AKAW NTVTE LS+ I  K+W+QALE
Sbjct: 834  KHWKKGEFPGITETFAPRKQPIKNIKKKLDKKSKAKAWVNTVTEALSDRIAKKQWLQALE 893

Query: 165  --------------------LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAY 224
                                LLVLLGR GQ  RA  LFD M++E+ EPT ELYTALLAAY
Sbjct: 894  VFEMLKVQPFYQPKEGTYMKLLVLLGRCGQAHRAHQLFDEMIQERLEPTPELYTALLAAY 953

Query: 225  CRNNLIDDAFSILNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPN 284
            CRNNLID+ FS+L  M++LP C PD+YTYS L+KACVD+SRFELVE+LY EM ERLITPN
Sbjct: 954  CRNNLIDEGFSVLRQMQSLPRCLPDVYTYSTLLKACVDASRFELVETLYHEMDERLITPN 1013

Query: 285  TVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWY 344
            TVTQNIVLSGYGK G YDQMEKVL  ML+S  C+PDVWTMNI+LSVFGNKGQI+ MERWY
Sbjct: 1014 TVTQNIVLSGYGKAGMYDQMEKVLSAMLDSKECKPDVWTMNIVLSVFGNKGQIDSMERWY 1073

Query: 345  EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADV 404
            EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTST+NNVIE FADV
Sbjct: 1074 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTFNNVIEVFADV 1133

Query: 405  GDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFY 464
            GDAK+MEYT  QMRAEGMKADTKTFCCLINGY+NAGLFHKVI +V+LA K EIPEN +FY
Sbjct: 1134 GDAKHMEYTLDQMRAEGMKADTKTFCCLINGYANAGLFHKVISTVQLAAKFEIPENITFY 1193

Query: 465  NAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELER 503
            NAVISACAKA+DL EM+RVF RMKD  CQPDS+TYSIM+EAY KE MND+++YLE E+
Sbjct: 1194 NAVISACAKADDLKEMERVFARMKDNQCQPDSRTYSIMVEAYRKEGMNDKIYYLEQEK 1242

[Close]
BLAST of Cp4.1LG12g03500 vs. TrEMBL
Match: M5XJ12_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020554mg PE=4 SV=1)

HSP 1 Score: 677.9 bits (1748), Expect = 9.5e-192
Identity = 333/428 (77.80%), Postives = 367/428 (85.75%), Query Frame = 1 

Query: 97  SSSSPVKKKHWKQGEFPGVTERF---DARKTPLKNVKKKLDRKMNAKAWANTVTETLSEH 156
           SSSS  +K+HWKQGEFPGV+E       R+ PLKNVKKKLDRK NAKAWANTVTE LS+ 
Sbjct: 54  SSSSETRKRHWKQGEFPGVSETSIPGTYRRAPLKNVKKKLDRKNNAKAWANTVTEALSDA 113

Query: 157 ITNKRWIQALE--------------------LLVLLGRSGQPQRARLLFDTMVEEKCEPT 216
           I  K+W+QALE                    LL LLGR GQP RAR LFD MVEE CEPT
Sbjct: 114 IDKKQWLQALEVFDMLREQPFYQPKEGTYMKLLGLLGRCGQPHRARQLFDAMVEEGCEPT 173

Query: 217 TELYTALLAAYCRNNLIDDAFSILNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLY 276
            ELYTALL AYCRNNLID+AFS+LN MKTLP CQPD++TYS LIK C+D+ +FELVESLY
Sbjct: 174 LELYTALLTAYCRNNLIDEAFSVLNQMKTLPHCQPDVFTYSTLIKVCIDALKFELVESLY 233

Query: 277 EEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGN 336
           EEMAERLITPNTVTQNIVLSGYGK GKYDQMEKVL GMLE  TC+PDVWTMN+ILSVFGN
Sbjct: 234 EEMAERLITPNTVTQNIVLSGYGKAGKYDQMEKVLSGMLEGATCKPDVWTMNVILSVFGN 293

Query: 337 KGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTST 396
           KGQI+MMERWYEKFR+FGIEPETRTFNILIGAYGKK++YDKMS+VMEYMRKLQFPWTT+T
Sbjct: 294 KGQIDMMERWYEKFRDFGIEPETRTFNILIGAYGKKKLYDKMSTVMEYMRKLQFPWTTAT 353

Query: 397 YNNVIEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAG 456
           YNNVIEAFADVGDAKNMEYTF QMRAEGMKADTKTFCCLINGY+NAGLFHKV+ SV+LAG
Sbjct: 354 YNNVIEAFADVGDAKNMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVVSSVQLAG 413

Query: 457 KCEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMND 502
           K EIPENT+FYNAVI+ACAKAEDLMEM+RVFKRMK+K C PDS TYS+M+EAY KE MND
Sbjct: 414 KFEIPENTTFYNAVIAACAKAEDLMEMERVFKRMKEKQCPPDSTTYSLMVEAYSKEGMND 473

[Close]
BLAST of Cp4.1LG12g03500 vs. TrEMBL
Match: A5BHU7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025315 PE=4 SV=1)

HSP 1 Score: 669.1 bits (1725), Expect = 4.4e-189
Identity = 344/487 (70.64%), Postives = 393/487 (80.70%), Query Frame = 1 

Query: 42  VRCTFAAPARKSPPPPSSSSSSSPDKKRHWKQGEFPGITETS----APRMTPARKSPPPS 101
           +  +F++    SP     + ++S  K R    G   G+   +    A R T +  S   S
Sbjct: 4   ISLSFSSSLLPSPLLQDKNKATSATKPRD-HHGSLCGVVRCAFASPARRKTSSTPSSSSS 63

Query: 102 SSSPVKKKHWKQGEFPGVTERFDARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNK 161
           SS+  KK+ WKQGEFPG +    +RKTP+KN+KKKLDRK +AKAWANTV E LS+ +  K
Sbjct: 64  SSAVGKKRLWKQGEFPGTSAEGRSRKTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKK 123

Query: 162 RWIQALE--------------------LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELY 221
           +W+QALE                    LLVLLG+SGQP RA  LFDTMVEE CEPTTELY
Sbjct: 124 QWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELY 183

Query: 222 TALLAAYCRNNLIDDAFSILNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMA 281
           TALLA+YCR+NLID+AFSILN MKTLP CQPD++TYS L+KACVD+SRFELVESLYEEM 
Sbjct: 184 TALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMD 243

Query: 282 ERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQI 341
            R ITPNTVTQNIVLSGYGK GK+D+MEKVL GMLEST+ +PDVWTMN ILS+FGNKGQI
Sbjct: 244 VRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQI 303

Query: 342 EMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNV 401
           E+ME+WYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNV
Sbjct: 304 EIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNV 363

Query: 402 IEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEI 461
           IEAF+DVGDAKNMEYTF QMRAEGMKADTKTFCCLI GY+NAGLFHKV+ SV+LAGK EI
Sbjct: 364 IEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEI 423

Query: 462 PENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHY 505
           PENTSFYNAVISACAKAEDL+EM+RVF RMKDKHCQPDS TYSIM+EAY+KE MND+++ 
Sbjct: 424 PENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYD 483

[Close]
BLAST of Cp4.1LG12g03500 vs. TrEMBL
Match: F6HE37_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00690 PE=4 SV=1)

HSP 1 Score: 669.1 bits (1725), Expect = 4.4e-189
Identity = 344/487 (70.64%), Postives = 393/487 (80.70%), Query Frame = 1 

Query: 42  VRCTFAAPARKSPPPPSSSSSSSPDKKRHWKQGEFPGITETS----APRMTPARKSPPPS 101
           +  +F++    SP     + ++S  K R    G   G+   +    A R T +  S   S
Sbjct: 4   ISLSFSSSLLPSPLLQDKNKATSATKPRD-HHGSLCGVVRCAFASPARRKTSSTPSSSSS 63

Query: 102 SSSPVKKKHWKQGEFPGVTERFDARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNK 161
           SS+  KK+ WKQGEFPG +    +RKTP+KN+KKKLDRK +AKAWANTV E LS+ +  K
Sbjct: 64  SSAVGKKRLWKQGEFPGTSAEGRSRKTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKK 123

Query: 162 RWIQALE--------------------LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELY 221
           +W+QALE                    LLVLLG+SGQP RA  LFDTMVEE CEPTTELY
Sbjct: 124 QWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELY 183

Query: 222 TALLAAYCRNNLIDDAFSILNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMA 281
           TALLA+YCR+NLID+AFSILN MKTLP CQPD++TYS L+KACVD+SRFELVESLYEEM 
Sbjct: 184 TALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMD 243

Query: 282 ERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQI 341
            R ITPNTVTQNIVLSGYGK GK+D+MEKVL GMLEST+ +PDVWTMN ILS+FGNKGQI
Sbjct: 244 VRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQI 303

Query: 342 EMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNV 401
           E+ME+WYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNV
Sbjct: 304 EIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNV 363

Query: 402 IEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEI 461
           IEAF+DVGDAKNMEYTF QMRAEGMKADTKTFCCLI GY+NAGLFHKV+ SV+LAGK EI
Sbjct: 364 IEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEI 423

Query: 462 PENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHY 505
           PENTSFYNAVISACAKAEDL+EM+RVF RMKDKHCQPDS TYSIM+EAY+KE MND+++ 
Sbjct: 424 PENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYD 483

[Close]
BLAST of Cp4.1LG12g03500 vs. TAIR10
Match: AT3G06430.1 (AT3G06430.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 634.4 bits (1635), Expect = 6.1e-182
Identity = 321/467 (68.74%), Postives = 377/467 (80.73%), Query Frame = 1 

Query: 58  SSSSSSSPDKKRHWKQGEFPGITETSAPRMTPARKSPPPSSSSPVKKKHWKQGEFPGVTE 117
           S  SS  P+ KR ++  +  GI       +  A KS P    S  KK+ WK GEFPG+TE
Sbjct: 11  SLCSSRIPEGKRRFRHRDV-GIVRC----VLAASKSSP---GSVTKKRLWKDGEFPGITE 70

Query: 118 RFDARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE------------- 177
             + R+TP+KNVKKKLDR+  A  W NTVTETLS+ I  K+W+QALE             
Sbjct: 71  PVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQP 130

Query: 178 -------LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSIL 237
                  LLVLLG+SGQP RA+ LFD M+EE  EPT ELYTALLAAY R+NLIDDAFSIL
Sbjct: 131 KEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSIL 190

Query: 238 NLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGK 297
           + MK+ P CQPD++TYS L+KACVD+S+F+LV+SLY+EM ERLITPNTVTQNIVLSGYG+
Sbjct: 191 DKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGR 250

Query: 298 IGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETR 357
           +G++DQMEKVL  ML ST C+PDVWTMNIILSVFGN G+I+MME WYEKFRNFGIEPETR
Sbjct: 251 VGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETR 310

Query: 358 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQM 417
           TFNILIG+YGKKRMYDKMSSVMEYMRKL+FPWTTSTYNN+IEAFADVGDAKNME TF QM
Sbjct: 311 TFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQM 370

Query: 418 RAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDL 477
           R+EGMKADTKTFCCLINGY+NAGLFHKVI SV+LA K EIPENT+FYNAVISACAKA+DL
Sbjct: 371 RSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDL 430

Query: 478 MEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQ 505
           +EM+RV+ RMK++ C  DS+T+ IM+EAYEKE MND+++YLE ER++
Sbjct: 431 IEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQK 469

[Close]
BLAST of Cp4.1LG12g03500 vs. TAIR10
Match: AT5G48730.1 (AT5G48730.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 290.8 bits (743), Expect = 1.7e-78
Identity = 159/397 (40.05%), Postives = 222/397 (55.92%), Query Frame = 1 

Query: 122 RKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE----------------- 181
           R+   K++ +K  +K + K    TV E+L E IT  RW  A++                 
Sbjct: 95  RREATKSIIEK--KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGI 154

Query: 182 ---LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMK 241
              L+V+LG+  QP++A  LF  M+ E C    E+YTAL++AY R+   D AF++L  MK
Sbjct: 155 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMK 214

Query: 242 TLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKY 301
           +   CQPD++TYSILIK+ +    F+ V+ L  +M  + I PNT+T N ++  YGK   +
Sbjct: 215 SSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMF 274

Query: 302 DQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNI 361
            +ME  L+ ML    C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNI
Sbjct: 275 VEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNI 334

Query: 362 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEG 421
           L+ +YGK   Y KMS+VMEYM+K  + WT  TYN VI+AF   GD K MEY F  M++E 
Sbjct: 335 LLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSER 394

Query: 422 MKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMD 481
           +     T C L+  Y  A    K+ G ++     +I  +  F+N ++ A  + E   EM 
Sbjct: 395 IFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMK 454

Query: 482 RVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYL 499
            V + M+ K  +PD  TY  M++AY    M   V  L
Sbjct: 455 GVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489

[Close]
BLAST of Cp4.1LG12g03500 vs. TAIR10
Match: AT3G53170.1 (AT3G53170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 284.6 bits (727), Expect = 1.2e-76
Identity = 145/394 (36.80%), Postives = 229/394 (58.12%), Query Frame = 1 

Query: 126 LKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALELLVLL---------------- 185
           +K +++K + +     W   V E L E I   RW  AL++  LL                
Sbjct: 91  VKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKL 150

Query: 186 ----GRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMKTLPC 245
               G   QP +A LLF+ M+ E  +PT ++YT+L++ Y ++ L+D AFS L  MK++  
Sbjct: 151 FKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSD 210

Query: 246 CQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQME 305
           C+PD++T+++LI  C    RF+LV+S+  EM+   +  +TVT N ++ GYGK G +++ME
Sbjct: 211 CKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEME 270

Query: 306 KVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGA 365
            VL  M+E     PDV T+N I+  +GN   +  ME WY +F+  G++P+  TFNILI +
Sbjct: 271 SVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILS 330

Query: 366 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGMKAD 425
           +GK  MY KM SVM++M K  F  TT TYN VIE F   G  + M+  F +M+ +G+K +
Sbjct: 331 FGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 390

Query: 426 TKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDRVFK 485
           + T+C L+N YS AGL  K+   ++     ++  +T F+N +I+A  +A DL  M  ++ 
Sbjct: 391 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 450

Query: 486 RMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLE 500
           +M+++ C+PD  T++ MI+ Y    + D V  LE
Sbjct: 451 QMEERKCKPDKITFATMIKTYTAHGIFDAVQELE 484

[Close]
BLAST of Cp4.1LG12g03500 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 150.6 bits (379), Expect = 2.7e-36
Identity = 95/332 (28.61%), Postives = 156/332 (46.99%), Query Frame = 1 

Query: 165 LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMKTLP 224
           LL + G+S +P+ A  + + MV     P+   Y +L++AY R+ ++D+A  + N M    
Sbjct: 320 LLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKG 379

Query: 225 CCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQM 284
             +PD++TY+ L+     + + E   S++EEM      PN  T N  +  YG  GK+ +M
Sbjct: 380 T-KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEM 439

Query: 285 EKVLLGMLESTTC--RPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL 344
            K+     E   C   PD+ T N +L+VFG  G    +   +++ +  G  PE  TFN L
Sbjct: 440 MKIFD---EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTL 499

Query: 345 IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM 404
           I AY +   +++  +V   M         STYN V+ A A  G  +  E    +M     
Sbjct: 500 ISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRC 559

Query: 405 KADTKTFCCLINGYSNA---GLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLME 464
           K +  T+C L++ Y+N    GL H +   V       I         ++  C+K + L E
Sbjct: 560 KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSG---VIEPRAVLLKTLVLVCSKCDLLPE 619

Query: 465 MDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAM 492
            +R F  +K++   PD  T + M+  Y +  M
Sbjct: 620 AERAFSELKERGFSPDITTLNSMVSIYGRRQM 644

[Close]
BLAST of Cp4.1LG12g03500 vs. TAIR10
Match: AT4G39620.1 (AT4G39620.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-34
Identity = 85/327 (25.99%), Postives = 153/327 (46.79%), Query Frame = 1 

Query: 164 ELLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNN----LIDDAFSILNL 223
           +L+ ++G+ GQ + A  LF  M    C P   +Y AL+ A+         ++     L+ 
Sbjct: 138 KLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDK 197

Query: 224 MKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIG 283
           MK +  CQP++ TY+IL++A   S + + V +L++++    ++P+  T N V+  YGK G
Sbjct: 198 MKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNG 257

Query: 284 KYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTF 343
              +ME VL  M  S  C+PD+ T N+++  +G K + E ME+ ++       +P   TF
Sbjct: 258 MIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTF 317

Query: 344 NILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRA 403
           N +I  YGK RM DK   V + M  + +  +  TY  +I  +   G        F ++  
Sbjct: 318 NSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGE 377

Query: 404 EGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLME 463
                   T   ++  Y   GL+ +       A    +  + S Y  +  A  KA+   +
Sbjct: 378 SDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQ 437

Query: 464 MDRVFKRMKDKHCQPDSKTYSIMIEAY 487
           +  + K+M+     P+ + +   +E +
Sbjct: 438 VQILMKKMEKDGIVPNKRFFLEALEVF 463

[Close]
BLAST of Cp4.1LG12g03500 vs. NCBI nr
Match: gi|700190416|gb|KGN45620.1| (hypothetical protein Csa_6G000680 [Cucumis sativus])

HSP 1 Score: 787.7 bits (2033), Expect = 1.2e-224
Identity = 418/538 (77.70%), Postives = 437/538 (81.23%), Query Frame = 1 

Query: 5   SFSFSSSLLPSSVSFDHGSSSFFPILISSSFDS----NSRVVRCTFAAPARKSPPPPSSS 64
           SFSFSSSLLPSSVSFDH S+  FPI +SSS  S    NSR+VRC FAAP RKSP P   S
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSCSSSSHPNSRIVRCAFAAPTRKSPVP---S 62

Query: 65  SSSSPDKKRHWKQGEFPGITETSAPRMTPARKSPPPSSSSPVKKKHWKQGEFPGVTERFD 124
           +SSSP KKRHWKQGEFPG TETS  R  P ++         VKKK               
Sbjct: 63  TSSSPAKKRHWKQGEFPGTTETSTRRRAPLKR---------VKKKL-------------- 122

Query: 125 ARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE---------------- 184
                        DRK NAKAWANTVTE LS+HITNKRW+QALE                
Sbjct: 123 -------------DRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEG 182

Query: 185 ----LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLM 244
               LLVLLGRSGQP RARLLFDTMV+E+CEPT ELYTALLAAYCRNNLIDDAFS LNLM
Sbjct: 183 TYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYCRNNLIDDAFSTLNLM 242

Query: 245 KTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 304
           KTLP CQPD+YTYSILIKACVD SRFE+VESLYEEMAERLITPNTVTQNIVLSGYGKIGK
Sbjct: 243 KTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 302

Query: 305 YDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFN 364
           YDQMEKVL+GMLESTTCRPDVWTMNIILSVFGNKG IEMMERWYEKFRNFGIEPETRTFN
Sbjct: 303 YDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFN 362

Query: 365 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAE 424
           ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTF QMRAE
Sbjct: 363 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAE 422

Query: 425 GMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEM 484
           GM+ADTKTFCCLINGY+NAGLFHKVIGSVKLAGK EIPENTSFYNAVISACAKAEDLMEM
Sbjct: 423 GMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLMEM 482

Query: 485 DRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQANLLVVRDKTANRE 519
           DRVFKRMKDKHCQPD+KTYSIM+EAY KE MNDRVHYLELE+KQ     V D  +N E
Sbjct: 483 DRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLELEKKQ-----VIDNASNNE 496

[Close]
BLAST of Cp4.1LG12g03500 vs. NCBI nr
Match: gi|778708982|ref|XP_004138596.2| (PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Cucumis sativus])

HSP 1 Score: 787.7 bits (2033), Expect = 1.2e-224
Identity = 418/538 (77.70%), Postives = 437/538 (81.23%), Query Frame = 1 

Query: 5   SFSFSSSLLPSSVSFDHGSSSFFPILISSSFDS----NSRVVRCTFAAPARKSPPPPSSS 64
           SFSFSSSLLPSSVSFDH S+  FPI +SSS  S    NSR+VRC FAAP RKSP P   S
Sbjct: 13  SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSCSSSSHPNSRIVRCAFAAPTRKSPVP---S 72

Query: 65  SSSSPDKKRHWKQGEFPGITETSAPRMTPARKSPPPSSSSPVKKKHWKQGEFPGVTERFD 124
           +SSSP KKRHWKQGEFPG TETS  R  P ++         VKKK               
Sbjct: 73  TSSSPAKKRHWKQGEFPGTTETSTRRRAPLKR---------VKKKL-------------- 132

Query: 125 ARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE---------------- 184
                        DRK NAKAWANTVTE LS+HITNKRW+QALE                
Sbjct: 133 -------------DRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEG 192

Query: 185 ----LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLM 244
               LLVLLGRSGQP RARLLFDTMV+E+CEPT ELYTALLAAYCRNNLIDDAFS LNLM
Sbjct: 193 TYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYCRNNLIDDAFSTLNLM 252

Query: 245 KTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 304
           KTLP CQPD+YTYSILIKACVD SRFE+VESLYEEMAERLITPNTVTQNIVLSGYGKIGK
Sbjct: 253 KTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 312

Query: 305 YDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFN 364
           YDQMEKVL+GMLESTTCRPDVWTMNIILSVFGNKG IEMMERWYEKFRNFGIEPETRTFN
Sbjct: 313 YDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFN 372

Query: 365 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAE 424
           ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTF QMRAE
Sbjct: 373 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAE 432

Query: 425 GMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEM 484
           GM+ADTKTFCCLINGY+NAGLFHKVIGSVKLAGK EIPENTSFYNAVISACAKAEDLMEM
Sbjct: 433 GMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLMEM 492

Query: 485 DRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQANLLVVRDKTANRE 519
           DRVFKRMKDKHCQPD+KTYSIM+EAY KE MNDRVHYLELE+KQ     V D  +N E
Sbjct: 493 DRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLELEKKQ-----VIDNASNNE 506

[Close]
BLAST of Cp4.1LG12g03500 vs. NCBI nr
Match: gi|659116850|ref|XP_008458291.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Cucumis melo])

HSP 1 Score: 782.7 bits (2020), Expect = 3.9e-223
Identity = 413/535 (77.20%), Postives = 439/535 (82.06%), Query Frame = 1 

Query: 5   SFSFSSSLLPSSVSFDHGSSSFFPILISSSFDSNSRVVRCTFAAPARKSPPPPSSSSSSS 64
           SFSFSSSLLPSSVSFDH S+  FPI +SSS                       SSSSSS 
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSS-----------------------SSSSSSH 62

Query: 65  PDKKRHWKQGEFPGITETSAPRMTPARKSPPPS-SSSPVKKKHWKQGEFPGVTERFDARK 124
           P+ +                    P RKSP PS SSSP KK+HWKQGEFPG+TE    RK
Sbjct: 63  PNSRI------------VRCAFAAPTRKSPVPSTSSSPAKKRHWKQGEFPGITETPTRRK 122

Query: 125 TPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE------------------- 184
           TPLKNVKKKLDRK NAKAWANTVTE LS+HI+NKRW++ALE                   
Sbjct: 123 TPLKNVKKKLDRKNNAKAWANTVTEALSDHISNKRWLEALEVFEMLREQPFYEPKEGTYM 182

Query: 185 -LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMKTL 244
            LLVLLGRSGQP RARLLFDTM++E+CEPT+ELYTALLAAYCRNNLIDDAFS LNLMKTL
Sbjct: 183 KLLVLLGRSGQPHRARLLFDTMLQERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTL 242

Query: 245 PCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQ 304
           P CQPD+YTYSILIKACVD+SRFE+VESLYEEMA+RLITPNTVTQNIVLSGYGKIGKYDQ
Sbjct: 243 PGCQPDVYTYSILIKACVDASRFEIVESLYEEMAQRLITPNTVTQNIVLSGYGKIGKYDQ 302

Query: 305 MEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILI 364
           MEKVL+GMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILI
Sbjct: 303 MEKVLIGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILI 362

Query: 365 GAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGMK 424
           GAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTF QMRAEGM+
Sbjct: 363 GAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMR 422

Query: 425 ADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDRV 484
           ADTKTFCCLINGY+NAGLFHKVI SVKLAGK EIPENTSFYNAVISACAKAEDLMEMDRV
Sbjct: 423 ADTKTFCCLINGYANAGLFHKVISSVKLAGKLEIPENTSFYNAVISACAKAEDLMEMDRV 482

Query: 485 FKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQANLLVVRDKTANRE 519
           FKRMKDKHCQPDSKTY+IM+EAY KE MNDRVHYLELE+K+     V D  +N E
Sbjct: 483 FKRMKDKHCQPDSKTYNIMMEAYGKEGMNDRVHYLELEKKE-----VIDYASNNE 497

[Close]
BLAST of Cp4.1LG12g03500 vs. NCBI nr
Match: gi|694324867|ref|XP_009353413.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 706.1 bits (1821), Expect = 4.7e-200
Identity = 358/482 (74.27%), Postives = 400/482 (82.99%), Query Frame = 1 

Query: 47  AAPAR-KSPPPPSSSSSSSPDKKRHWKQGEFPGITETSAP---RMTPARKSPPPSSSSPV 106
           +APA  + PP  S+SS SS  +K+HWK+GEFPG++ETS P   R   AR    PSS +  
Sbjct: 84  SAPANYRKPPGRSTSSPSSDTRKKHWKRGEFPGVSETSTPATYRKPSARSPSYPSSDN-- 143

Query: 107 KKKHWKQGEFPGVTERFDA---RKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRW 166
           KKKHWKQGEFPGV+E       RK PLKNVKKKLDRK NAKAW NTVTE LS+ I  K+W
Sbjct: 144 KKKHWKQGEFPGVSETSIPAIYRKPPLKNVKKKLDRKNNAKAWVNTVTEALSDAIDKKQW 203

Query: 167 IQALE--------------------LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTA 226
           +QALE                    L+ +LGR GQP RAR LFDTMVEE CEPT ELYTA
Sbjct: 204 LQALEVFDMLREQPFYQPKEGTYMKLIGMLGRCGQPNRARQLFDTMVEEGCEPTLELYTA 263

Query: 227 LLAAYCRNNLIDDAFSILNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAER 286
           LLAAYCRNNLID+AFS+LNLMKTLP CQPD++TYS LIK CVD  +F+LVESLYEEMAER
Sbjct: 264 LLAAYCRNNLIDEAFSVLNLMKTLPQCQPDVFTYSTLIKVCVDHLKFDLVESLYEEMAER 323

Query: 287 LITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEM 346
           LITPNTVTQNIVLSGYGK GKYDQMEKVL GMLE T+C+PDVWTMN+ILSVFGNKGQI+M
Sbjct: 324 LITPNTVTQNIVLSGYGKAGKYDQMEKVLSGMLEGTSCKPDVWTMNVILSVFGNKGQIDM 383

Query: 347 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 406
           MERWYEKFR+FGIEPETRT NILIGAYGKKR+YDKMS+VMEYMRKLQFPWTT+TYNNVIE
Sbjct: 384 MERWYEKFRDFGIEPETRTLNILIGAYGKKRLYDKMSTVMEYMRKLQFPWTTATYNNVIE 443

Query: 407 AFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPE 466
           AFADVGDAKNMEYTF QMRAEGMKADTKTFCCLINGY+NAGLFHKV+  V+LAGK EIPE
Sbjct: 444 AFADVGDAKNMEYTFEQMRAEGMKADTKTFCCLINGYANAGLFHKVVSCVQLAGKFEIPE 503

Query: 467 NTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLE 502
           NT+FYNAVI+ACAKAEDLMEM+RVF RMK+K CQ DS TYS+M+EAY KE MND+++YL+
Sbjct: 504 NTTFYNAVIAACAKAEDLMEMERVFNRMKEKQCQADSTTYSVMVEAYSKEGMNDKIYYLK 563

[Close]
BLAST of Cp4.1LG12g03500 vs. NCBI nr
Match: gi|657996020|ref|XP_008390371.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Malus domestica])

HSP 1 Score: 703.7 bits (1815), Expect = 2.3e-199
Identity = 351/476 (73.74%), Postives = 397/476 (83.40%), Query Frame = 1 

Query: 52  KSPPPPSSSSSSSPDKKRHWKQGEFPGITETSAP---RMTPARKSPPPSSSSPVKKKHWK 111
           +  P  S+SS SS  +K+HWK+GEFPG++ETS P   R T AR +  PSS +  +KKHWK
Sbjct: 123 RKTPGRSTSSESSDTRKKHWKRGEFPGVSETSTPATYRKTSARSASYPSSDN--RKKHWK 182

Query: 112 QGEFPGVTERFDA---RKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALE- 171
           QGEFPGV+E       RK PLKNVKKKLDRK NAKAW NTVTE LS+ I  K+W+QALE 
Sbjct: 183 QGEFPGVSETSIPAIYRKPPLKNVKKKLDRKNNAKAWVNTVTEALSDAIDKKQWLQALEV 242

Query: 172 -------------------LLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYC 231
                              L+ +LGR GQP RAR LFDTMVEE CEPT +LYTALLAAYC
Sbjct: 243 FDMLREQPFYQPKEGTYMKLIGMLGRCGQPNRARQLFDTMVEEGCEPTLDLYTALLAAYC 302

Query: 232 RNNLIDDAFSILNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNT 291
           RNNLID+AFS+LNLMKTLP CQPD++TYS LIK C+D  +F+LVESLYEEMAERLI PNT
Sbjct: 303 RNNLIDEAFSVLNLMKTLPQCQPDVFTYSTLIKVCIDHLKFDLVESLYEEMAERLIAPNT 362

Query: 292 VTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYE 351
           VTQNIVLSGYGK GKYDQMEKVL GMLE T+C+PDVWTMN++LSVFGNKGQI+MMERWYE
Sbjct: 363 VTQNIVLSGYGKAGKYDQMEKVLSGMLEGTSCKPDVWTMNVVLSVFGNKGQIDMMERWYE 422

Query: 352 KFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVG 411
           KFR+FGIEPETRT NILIGAYGKKR+YDKMS+VMEYMRKLQFPWTT+TYNNVIEAFADVG
Sbjct: 423 KFRDFGIEPETRTLNILIGAYGKKRLYDKMSTVMEYMRKLQFPWTTATYNNVIEAFADVG 482

Query: 412 DAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYN 471
           DAKNMEYTF QMRAEGMKADTKTFCCLINGY+NAGLFHKV+  V+LAGK EIPENT+FYN
Sbjct: 483 DAKNMEYTFEQMRAEGMKADTKTFCCLINGYANAGLFHKVVSCVQLAGKFEIPENTTFYN 542

Query: 472 AVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELE 502
           AVI+ACAKAEDLMEM+RVF RMK+K CQPDS TYS+M+EAY KE MND+++YL+ E
Sbjct: 543 AVIAACAKAEDLMEMERVFNRMKEKQCQPDSTTYSVMVEAYSKEGMNDKIYYLKQE 596

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g03500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP216_ARATH1.1e-18068.74Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop... [more]
PP424_ARATH2.9e-7740.05Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
PP279_ARATH2.1e-7536.80Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN... [more]
PP362_ARATH4.7e-3528.61Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN... [more]
PP358_ARATH4.4e-3325.99Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop... [more]
BLAST of Cp4.1LG12g03500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7C8_CUCSA8.5e-22577.70Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000680 PE=4 SV=1[more]
A0A067K848_JATCU7.8e-19471.97Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19079 PE=4 SV=1[more]
M5XJ12_PRUPE9.5e-19277.80Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020554mg PE=4 S... [more]
A5BHU7_VITVI4.4e-18970.64Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025315 PE=4 SV=1[more]
F6HE37_VITVI4.4e-18970.64Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00690 PE=4 SV=... [more]
BLAST of Cp4.1LG12g03500 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06430.16.1e-18268.74 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G48730.11.7e-7840.05 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G53170.11.2e-7636.80 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G02860.12.7e-3628.61 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G39620.12.5e-3425.99 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG12g03500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190416|gb|KGN45620.1|1.2e-22477.70hypothetical protein Csa_6G000680 [Cucumis sativus][more]
gi|778708982|ref|XP_004138596.2|1.2e-22477.70PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic ... [more]
gi|659116850|ref|XP_008458291.1|3.9e-22377.20PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic ... [more]
gi|694324867|ref|XP_009353413.1|4.7e-20074.27PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-... [more]
gi|657996020|ref|XP_008390371.1|2.3e-19973.74PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003006 developmental process involved in reproduction
biological_process GO:0009790 embryo development
biological_process GO:0048229 gametophyte development
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009553 embryo sac development
biological_process GO:0009555 pollen development
biological_process GO:0048868 pollen tube development
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0019843 rRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g03500.1Cp4.1LG12g03500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 269..293
score: 0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 440..486
score: 2.8E-13coord: 193..240
score: 4.8E-12coord: 299..347
score: 7.
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 369..416
score: 3.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 168..193
score: 0.002coord: 196..229
score: 5.0E-6coord: 444..476
score: 4.9E-8coord: 231..264
score: 1.8E-5coord: 303..334
score: 0.0022coord: 266..300
score: 1.3E-4coord: 373..405
score: 0.0013coord: 338..366
score: 4.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 193..227
score: 8.879coord: 370..404
score: 9.131coord: 264..299
score: 8.835coord: 335..369
score: 8.55coord: 300..334
score: 9.657coord: 158..192
score: 6.621coord: 229..263
score: 10.918coord: 440..474
score: 11.235coord: 475..509
score: 6.226coord: 405..439
score: 6
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 75..501
score: 5.9E
NoneNo IPR availablePANTHERPTHR24015:SF301SUBFAMILY NOT NAMEDcoord: 75..501
score: 5.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g03500Cucsa.135270Cucumber (Gy14) v1cgycpeB0359
Cp4.1LG12g03500CmaCh17G003960Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g03500CmaCh08G013070Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g03500CmoCh08G012680Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g03500CmoCh17G003850Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g03500Cla009210Watermelon (97103) v1cpewmB161
Cp4.1LG12g03500Csa6G000680Cucumber (Chinese Long) v2cpecuB141
Cp4.1LG12g03500MELO3C021235Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g03500ClCG06G004250Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g03500CSPI06G00160Wild cucumber (PI 183967)cpecpiB143
Cp4.1LG12g03500Lsi09G015240Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g03500MELO3C021235.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g03500CsaV3_6G000170Cucumber (Chinese Long) v3cpecucB0165
Cp4.1LG12g03500Bhi12G001770Wax gourdcpewgoB0173
Cp4.1LG12g03500CsGy6G000180Cucumber (Gy14) v2cgybcpeB721
Cp4.1LG12g03500Carg05575Silver-seed gourdcarcpeB0099
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g03500Cp4.1LG17g00030Cucurbita pepo (Zucchini)cpecpeB158
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g03500Cucumber (Gy14) v2cgybcpeB179
Cp4.1LG12g03500Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g03500Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g03500Silver-seed gourdcarcpeB0393
Cp4.1LG12g03500Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g03500Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g03500Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g03500Watermelon (97103) v1cpewmB152