Cp4.1LG12g03130 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g03130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 2026324 .. 2026719 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGGCCATACCAAAAGAAGAAGGTGCCCAACCTAATTCCATACCTGAGGGACCTGAAACATCCAAGCCTAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAGGCTACCACCACCACTTCTCGATTGGACTGTGACGATGAGGAGAAAAAACTAGAGACCCATAATTCCACTATGAAGGATCCAAAGCTAGAGGAAGAAAATTGGGACCTGGGATCATGTGAATTCACGGCTGATGCTGAGAAACGAGGTAACGGGTTCACAATTGTGGAGAGTGTGGAATGGTGCTACTCTGCTTGGCCTTCATCGATGAATTCCAGCTTTAATAATAATGAATGGCTGAATTGGGAGTGGGAAGATGATGGGGTTTTAGGTTAA

mRNA sequence

ATGAAGAAGGCCATACCAAAAGAAGAAGGTGCCCAACCTAATTCCATACCTGAGGGACCTGAAACATCCAAGCCTAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAGGCTACCACCACCACTTCTCGATTGGACTGTGACGATGAGGAGAAAAAACTAGAGACCCATAATTCCACTATGAAGGATCCAAAGCTAGAGGAAGAAAATTGGGACCTGGGATCATGTGAATTCACGGCTGATGCTGAGAAACGAGGTAACGGGTTCACAATTGTGGAGAGTGTGGAATGGTGCTACTCTGCTTGGCCTTCATCGATGAATTCCAGCTTTAATAATAATGAATGGCTGAATTGGGAGTGGGAAGATGATGGGGTTTTAGGTTAA

Coding sequence (CDS)

ATGAAGAAGGCCATACCAAAAGAAGAAGGTGCCCAACCTAATTCCATACCTGAGGGACCTGAAACATCCAAGCCTAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAGGCTACCACCACCACTTCTCGATTGGACTGTGACGATGAGGAGAAAAAACTAGAGACCCATAATTCCACTATGAAGGATCCAAAGCTAGAGGAAGAAAATTGGGACCTGGGATCATGTGAATTCACGGCTGATGCTGAGAAACGAGGTAACGGGTTCACAATTGTGGAGAGTGTGGAATGGTGCTACTCTGCTTGGCCTTCATCGATGAATTCCAGCTTTAATAATAATGAATGGCTGAATTGGGAGTGGGAAGATGATGGGGTTTTAGGTTAA

Protein sequence

MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLETHNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWLNWEWEDDGVLG
Homology
[Close]
BLAST of Cp4.1LG12g03130 vs. NCBI nr
Match: gi|449464726|ref|XP_004150080.1| (PREDICTED: transcription repressor MYB6 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.9e-17
Identity = 65/132 (49.24%), Postives = 77/132 (58.33%), Query Frame = 1 

Query: 2   KKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLETH 61
           KK IP EE  Q NSIPE   T+KP +EEEE            TT+S  + +  +      
Sbjct: 150 KKTIPSEESCQSNSIPETTTTNKPKEEEEEH----------ATTSSSSEKEPSKNDHNNK 209

Query: 62  NSTMKDPKLEEENWDLGSCEFTADAEKRGNGF--TIVESVEWCYSAWPSSMNSSFNNNEW 121
           NST KDPK+EEE+WD      T D EK       TI+ES EW YSAWPS   S+F NNEW
Sbjct: 210 NSTTKDPKIEEEHWDF----TTDDGEKLEKEVISTIIESGEWFYSAWPS---SNF-NNEW 263

Query: 122 LNWEWEDDGVLG 132
           +NW+WE DGVLG
Sbjct: 270 MNWDWESDGVLG 263

[Close]
BLAST of Cp4.1LG12g03130 vs. NCBI nr
Match: gi|659117020|ref|XP_008458382.1| (PREDICTED: myb-related protein Myb4-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 8.9e-15
Identity = 61/132 (46.21%), Postives = 77/132 (58.33%), Query Frame = 1 

Query: 2   KKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLETH 61
           KK IP EE  Q NSIPE    +KP ++EE        E++          +D   K + +
Sbjct: 150 KKTIPNEESCQSNSIPETTNNNKPKEQEEHATTSSSSEKEPNR-------NDHNNKKKNN 209

Query: 62  NSTMKDPKLEEENWDLGSCEFTADAEKRGNGF--TIVESVEWCYSAWPSSMNSSFNNNEW 121
           NST KDPK+EEE+W+      T D EK  N    TI+ES EW YS+WPS   S+F NNEW
Sbjct: 210 NSTTKDPKIEEEHWEF----TTDDGEKVENEVISTIIESGEWFYSSWPS---SNF-NNEW 266

Query: 122 LNWEWEDDGVLG 132
           +NW+WE DGVLG
Sbjct: 270 MNWDWESDGVLG 266

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g03130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g03130 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g03130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g03130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464726|ref|XP_004150080.1|1.9e-1749.24PREDICTED: transcription repressor MYB6 [Cucumis sativus][more]
gi|659117020|ref|XP_008458382.1|8.9e-1546.21PREDICTED: myb-related protein Myb4-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0051555 flavonol biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g03130.1Cp4.1LG12g03130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 26..48
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g03130CmaCh17G003560Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g03130MELO3C034933.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g03130CsaV3_6G022540Cucumber (Chinese Long) v3cpecucB0175
Cp4.1LG12g03130CsGy6G016640Cucumber (Gy14) v2cgybcpeB731
Cp4.1LG12g03130Carg05534Silver-seed gourdcarcpeB0099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g03130Cucurbita pepo (Zucchini)cpecpeB109
Cp4.1LG12g03130Cucurbita pepo (Zucchini)cpecpeB158
Cp4.1LG12g03130Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g03130Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g03130Cucumber (Gy14) v1cgycpeB0107
Cp4.1LG12g03130Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g03130Cucurbita maxima (Rimu)cmacpeB812
Cp4.1LG12g03130Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g03130Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g03130Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g03130Cucurbita moschata (Rifu)cmocpeB766
Cp4.1LG12g03130Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g03130Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g03130Wild cucumber (PI 183967)cpecpiB153
Cp4.1LG12g03130Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g03130Cucumber (Chinese Long) v2cpecuB151
Cp4.1LG12g03130Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g03130Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g03130Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g03130Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g03130Watermelon (97103) v1cpewmB152
Cp4.1LG12g03130Watermelon (97103) v1cpewmB161
Cp4.1LG12g03130Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g03130Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g03130Cucumber (Gy14) v2cgybcpeB179
Cp4.1LG12g03130Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g03130Melon (DHL92) v3.6.1cpemedB169
Cp4.1LG12g03130Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g03130Silver-seed gourdcarcpeB0393
Cp4.1LG12g03130Silver-seed gourdcarcpeB0984
Cp4.1LG12g03130Cucumber (Chinese Long) v3cpecucB0149
Cp4.1LG12g03130Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g03130Wax gourdcpewgoB0170
Cp4.1LG12g03130Wax gourdcpewgoB0173
Cp4.1LG12g03130Wax gourdcpewgoB0186
Cp4.1LG12g03130Wax gourdcpewgoB0188