Cp4.1LG12g01540 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g01540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 898660 .. 898884 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAAATGAGTACTACAGCTACCCGGCCGAGGGCACGGAGGCGATGCTGGAGGCTCCACCGCCGATCGACGAGAGCTTTTGGTCCGAGGTGGCTGAGGATTCGACGAACTCAAATTCCATGGATAAGAGCTATGGTGAAAGCGTTGTTGATGATGACATGGAATTTTGGTACAACGTTTTTGTCCAAGCTGGAGGAATTTCAGAACTGCCAGAATTTTGA

mRNA sequence

ATGGCTGAAAATGAGTACTACAGCTACCCGGCCGAGGGCACGGAGGCGATGCTGGAGGCTCCACCGCCGATCGACGAGAGCTTTTGGTCCGAGGTGGCTGAGGATTCGACGAACTCAAATTCCATGGATAAGAGCTATGGTGAAAGCGTTGTTGATGATGACATGGAATTTTGGTACAACGTTTTTGTCCAAGCTGGAGGAATTTCAGAACTGCCAGAATTTTGA

Coding sequence (CDS)

ATGGCTGAAAATGAGTACTACAGCTACCCGGCCGAGGGCACGGAGGCGATGCTGGAGGCTCCACCGCCGATCGACGAGAGCTTTTGGTCCGAGGTGGCTGAGGATTCGACGAACTCAAATTCCATGGATAAGAGCTATGGTGAAAGCGTTGTTGATGATGACATGGAATTTTGGTACAACGTTTTTGTCCAAGCTGGAGGAATTTCAGAACTGCCAGAATTTTGA

Protein sequence

MAENEYYSYPAEGTEAMLEAPPPIDESFWSEVAEDSTNSNSMDKSYGESVVDDDMEFWYNVFVQAGGISELPEF
Homology
[Close]
BLAST of Cp4.1LG12g01540 vs. TrEMBL
Match: A0A0A0LI77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174660 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13
Identity = 52/106 (49.06%), Postives = 59/106 (55.66%), Query Frame = 1 

Query: 1   MAENEYYSYPAEGTEAMLEAPPPIDESFWSEVAEDS-TNSNSMDKS-------------- 60
           + ENEYYSY AE      +A PPIDESFWSEV ++S TNSNS   S              
Sbjct: 23  ITENEYYSYTAE------DAMPPIDESFWSEVVDNSMTNSNSNSDSSSNSNYDSEEKMEE 82

Query: 61  -----------------YGESVVDDDMEFWYNVFVQAGGISELPEF 75
                            +G+ VVDDDMEFWYNVFV+AG ISELPEF
Sbjct: 83  FPPVSMDMMETDSDKRLHGQCVVDDDMEFWYNVFVKAGEISELPEF 122

[Close]
BLAST of Cp4.1LG12g01540 vs. NCBI nr
Match: gi|659121407|ref|XP_008460645.1| (PREDICTED: myb-related protein Myb4-like [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 52/104 (50.00%), Postives = 58/104 (55.77%), Query Frame = 1 

Query: 1   MAENEYYSYPAEGTEAMLEAPPPIDESFWSEVAEDS-TNSNSMDKS-------------- 60
           M ENEYYSY  E      +A PPIDESFWS+V E+S TNSNS   S              
Sbjct: 187 MTENEYYSYTVE------DAMPPIDESFWSDVVENSMTNSNSDSSSNSNYDSEEKREEFP 246

Query: 61  ---------------YGESVVDDDMEFWYNVFVQAGGISELPEF 75
                          +G+ VVDDDMEFWYNVFV+AG ISELPEF
Sbjct: 247 PVSMDMTETNSDKRLHGQCVVDDDMEFWYNVFVKAGEISELPEF 284

[Close]
BLAST of Cp4.1LG12g01540 vs. NCBI nr
Match: gi|449458822|ref|XP_004147145.1| (PREDICTED: myb-related protein Myb4-like [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 52/106 (49.06%), Postives = 59/106 (55.66%), Query Frame = 1 

Query: 1   MAENEYYSYPAEGTEAMLEAPPPIDESFWSEVAEDS-TNSNSMDKS-------------- 60
           + ENEYYSY AE      +A PPIDESFWSEV ++S TNSNS   S              
Sbjct: 187 ITENEYYSYTAE------DAMPPIDESFWSEVVDNSMTNSNSNSDSSSNSNYDSEEKMEE 246

Query: 61  -----------------YGESVVDDDMEFWYNVFVQAGGISELPEF 75
                            +G+ VVDDDMEFWYNVFV+AG ISELPEF
Sbjct: 247 FPPVSMDMMETDSDKRLHGQCVVDDDMEFWYNVFVKAGEISELPEF 286

[Close]
BLAST of Cp4.1LG12g01540 vs. NCBI nr
Match: gi|700206481|gb|KGN61600.1| (hypothetical protein Csa_2G174660 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 52/106 (49.06%), Postives = 59/106 (55.66%), Query Frame = 1 

Query: 1   MAENEYYSYPAEGTEAMLEAPPPIDESFWSEVAEDS-TNSNSMDKS-------------- 60
           + ENEYYSY AE      +A PPIDESFWSEV ++S TNSNS   S              
Sbjct: 23  ITENEYYSYTAE------DAMPPIDESFWSEVVDNSMTNSNSNSDSSSNSNYDSEEKMEE 82

Query: 61  -----------------YGESVVDDDMEFWYNVFVQAGGISELPEF 75
                            +G+ VVDDDMEFWYNVFV+AG ISELPEF
Sbjct: 83  FPPVSMDMMETDSDKRLHGQCVVDDDMEFWYNVFVKAGEISELPEF 122

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g01540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g01540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI77_CUCSA1.5e-1349.06Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174660 PE=4 SV=1[more]
BLAST of Cp4.1LG12g01540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g01540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121407|ref|XP_008460645.1|1.2e-1350.00PREDICTED: myb-related protein Myb4-like [Cucumis melo][more]
gi|449458822|ref|XP_004147145.1|2.1e-1349.06PREDICTED: myb-related protein Myb4-like [Cucumis sativus][more]
gi|700206481|gb|KGN61600.1|2.1e-1349.06hypothetical protein Csa_2G174660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g01540.1Cp4.1LG12g01540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g01540CmoCh17G001630Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g01540CsaV3_2G012780Cucumber (Chinese Long) v3cpecucB0145
Cp4.1LG12g01540Bhi12G001427Wax gourdcpewgoB0172
Cp4.1LG12g01540CsGy2G010410Cucumber (Gy14) v2cgybcpeB175
Cp4.1LG12g01540Carg10086Silver-seed gourdcarcpeB0322
Cp4.1LG12g01540Carg10964Silver-seed gourdcarcpeB1501
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g01540Wax gourdcpewgoB0189
Cp4.1LG12g01540Wax gourdcpewgoB0196
Cp4.1LG12g01540Cucurbita pepo (Zucchini)cpecpeB155
Cp4.1LG12g01540Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG12g01540Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g01540Cucurbita pepo (Zucchini)cpecpeB189
Cp4.1LG12g01540Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g01540Cucumber (Gy14) v1cgycpeB0670
Cp4.1LG12g01540Cucumber (Gy14) v1cgycpeB1007
Cp4.1LG12g01540Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g01540Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g01540Cucurbita maxima (Rimu)cmacpeB519
Cp4.1LG12g01540Cucurbita maxima (Rimu)cmacpeB600
Cp4.1LG12g01540Cucurbita maxima (Rimu)cmacpeB810
Cp4.1LG12g01540Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g01540Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g01540Cucurbita moschata (Rifu)cmocpeB549
Cp4.1LG12g01540Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g01540Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g01540Wild cucumber (PI 183967)cpecpiB126
Cp4.1LG12g01540Wild cucumber (PI 183967)cpecpiB135
Cp4.1LG12g01540Cucumber (Chinese Long) v2cpecuB127
Cp4.1LG12g01540Cucumber (Chinese Long) v2cpecuB134
Cp4.1LG12g01540Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g01540Bottle gourd (USVL1VR-Ls)cpelsiB120
Cp4.1LG12g01540Bottle gourd (USVL1VR-Ls)cpelsiB124
Cp4.1LG12g01540Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g01540Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g01540Watermelon (Charleston Gray)cpewcgB150
Cp4.1LG12g01540Watermelon (97103) v1cpewmB147
Cp4.1LG12g01540Watermelon (97103) v1cpewmB151
Cp4.1LG12g01540Watermelon (97103) v1cpewmB161
Cp4.1LG12g01540Melon (DHL92) v3.5.1cpemeB137
Cp4.1LG12g01540Melon (DHL92) v3.5.1cpemeB143
Cp4.1LG12g01540Cucumber (Gy14) v2cgybcpeB302
Cp4.1LG12g01540Melon (DHL92) v3.6.1cpemedB166
Cp4.1LG12g01540Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g01540Silver-seed gourdcarcpeB0331
Cp4.1LG12g01540Silver-seed gourdcarcpeB1087
Cp4.1LG12g01540Silver-seed gourdcarcpeB1328
Cp4.1LG12g01540Cucumber (Chinese Long) v3cpecucB0153