Cp4.1LG12g01480 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g01480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionXB3 in, putative isoform 1
LocationCp4.1LG12 : 888618 .. 888951 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCTTGCTCATGTTTGGATTTTTTATTGAATGGACAGGATGCCCAACCTCGTTTAATCATTCCATTGTGGAAGTCATGTTTAGAGGAACATAAGTTGCAGGATCCTGATCCCTCTGTTGTTATTGTCGACAACGCTCCAAGTAATTTCTAATTGCTGGAAAATGCTATTTCAGTAACAGTTATTGACTTCTTCAGTTAAATTTTATTTATTGTCCTTGGTTTTGCTCTCAGACTTAGTCTCAAGAGGAGTAAGGAGGCGAAAACGGAGTTGTCACACCTCCTGGGAAGCCAGATCTCGATTTCGAAAATCAAAGAGACGTAAGAACTAA

mRNA sequence

ATGTTTTCTTGCTCATGTTTGGATTTTTTATTGAATGGACAGGATGCCCAACCTCGTTTAATCATTCCATTGTGGAAGTCATGTTTAGAGGAACATAAGTTGCAGGATCCTGATCCCTCTGTTGTTATTGTCGACAACGCTCCAAACTTAGTCTCAAGAGGAGTAAGGAGGCGAAAACGGAGTTGTCACACCTCCTGGGAAGCCAGATCTCGATTTCGAAAATCAAAGAGACGTAAGAACTAA

Coding sequence (CDS)

ATGTTTTCTTGCTCATGTTTGGATTTTTTATTGAATGGACAGGATGCCCAACCTCGTTTAATCATTCCATTGTGGAAGTCATGTTTAGAGGAACATAAGTTGCAGGATCCTGATCCCTCTGTTGTTATTGTCGACAACGCTCCAAACTTAGTCTCAAGAGGAGTAAGGAGGCGAAAACGGAGTTGTCACACCTCCTGGGAAGCCAGATCTCGATTTCGAAAATCAAAGAGACGTAAGAACTAA

Protein sequence

MFSCSCLDFLLNGQDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSRFRKSKRRKN
Homology
[Close]
BLAST of Cp4.1LG12g01480 vs. TrEMBL
Match: A0A0A0LLI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174140 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.5e-22
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSRFR 73
           QDAQPRL+IPLWKS LEEH+LQ+ DPSVVIVDN PNL  RG RRR+RSCHTSWEAR RFR
Sbjct: 187 QDAQPRLVIPLWKSYLEEHRLQESDPSVVIVDNTPNLTPRGGRRRRRSCHTSWEARCRFR 246

Query: 74  KSK 77
           KSK
Sbjct: 247 KSK 249

[Close]
BLAST of Cp4.1LG12g01480 vs. TrEMBL
Match: A0A061EN06_THECC (XB3 in, putative isoform 1 OS=Theobroma cacao GN=TCM_020902 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.9e-08
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSR 72
           QDAQPR IIPLW++ LEE KL  PDPSV I+DN+  +  RG  RR+RS +TS EAR +
Sbjct: 187 QDAQPRTIIPLWRANLEEPKLNQPDPSVAILDNS-TISRRG--RRRRSIYTSREARCK 241

[Close]
BLAST of Cp4.1LG12g01480 vs. TrEMBL
Match: A5BSQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01160 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.9e-08
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSRFR 73
           QDAQPR  I LWK+ ++E K +DPDP+V+I+DN  + +SRG  RR+R C+TS EAR + R
Sbjct: 187 QDAQPRTTIALWKANMDEAKFEDPDPAVIILDN--STISRG--RRRRRCYTSREARCKPR 242

[Close]
BLAST of Cp4.1LG12g01480 vs. TrEMBL
Match: A0A0B0P4Y6_GOSAR (Putative E3 ubiquitin-protein ligase XBAT35-like protein OS=Gossypium arboreum GN=F383_26132 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-07
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSR 72
           QDAQPR +I LWK+ LEE KL  PDPSV IVDN+ ++  RG  RR+R+ +TS EAR +
Sbjct: 190 QDAQPRTVIALWKANLEEPKLNQPDPSVAIVDNS-SISRRG--RRRRTIYTSREARCK 244

[Close]
BLAST of Cp4.1LG12g01480 vs. TrEMBL
Match: A0A0D2UUE7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G174600 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-07
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSR 72
           QDAQPR +I LWK+ LEE KL  PDPSV I+DN+ ++  RG  RR+R+ +TS EAR +
Sbjct: 109 QDAQPRTVIALWKANLEEPKLDQPDPSVAILDNS-SISRRG--RRRRTIYTSREARCK 163

[Close]
BLAST of Cp4.1LG12g01480 vs. TAIR10
Match: AT3G23280.1 (AT3G23280.1 XB3 ortholog 5 in Arabidopsis thaliana)

HSP 1 Score: 47.8 bits (112), Expect = 3.8e-06
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSRFR 73
           QDAQPR ++PLWK+ LEE K +  D SV+IVDN+  + SR +++R R C +    R +  
Sbjct: 187 QDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNS-TIPSRRMKKR-RVCASHGRRRPQVV 246

Query: 74  KSKRRK 80
           +  R K
Sbjct: 247 RQTRLK 250

[Close]
BLAST of Cp4.1LG12g01480 vs. NCBI nr
Match: gi|449458826|ref|XP_004147147.1| (PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 7.8e-22
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSRFR 73
           QDAQPRL+IPLWKS LEEH+LQ+ DPSVVIVDN PNL  RG RRR+RSCHTSWEAR RFR
Sbjct: 187 QDAQPRLVIPLWKSYLEEHRLQESDPSVVIVDNTPNLTPRGGRRRRRSCHTSWEARCRFR 246

Query: 74  KSK 77
           KSK
Sbjct: 247 KSK 249

[Close]
BLAST of Cp4.1LG12g01480 vs. NCBI nr
Match: gi|659121411|ref|XP_008460647.1| (PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSRFR 73
           QDAQPRL+IPLWKS LEEH+LQ+ DPSVVIVDN PNL  RG RRR+R CHTSWEAR RFR
Sbjct: 187 QDAQPRLVIPLWKSYLEEHRLQESDPSVVIVDNTPNLAPRGGRRRRRGCHTSWEARCRFR 246

Query: 74  KSK 77
           KSK
Sbjct: 247 KSK 249

[Close]
BLAST of Cp4.1LG12g01480 vs. NCBI nr
Match: gi|296083664|emb|CBI23653.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-08
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSRFR 73
           QDAQPR  I LWK+ ++E K +DPDP+V+I+DN  + +SRG  RR+R C+TS EAR + R
Sbjct: 187 QDAQPRTTIALWKANMDEAKFEDPDPAVIILDN--STISRG--RRRRRCYTSREARCKPR 242

[Close]
BLAST of Cp4.1LG12g01480 vs. NCBI nr
Match: gi|731389735|ref|XP_010650095.1| (PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Vitis vinifera])

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-08
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSRFR 73
           QDAQPR  I LWK+ ++E K +DPDP+V+I+DN  + +SRG  RR+R C+TS EAR + R
Sbjct: 187 QDAQPRTTIALWKANMDEAKFEDPDPAVIILDN--STISRG--RRRRRCYTSREARCKPR 242

[Close]
BLAST of Cp4.1LG12g01480 vs. NCBI nr
Match: gi|590659456|ref|XP_007035132.1| (XB3 in, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-08
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 14  QDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNAPNLVSRGVRRRKRSCHTSWEARSR 72
           QDAQPR IIPLW++ LEE KL  PDPSV I+DN+  +  RG  RR+RS +TS EAR +
Sbjct: 187 QDAQPRTIIPLWRANLEEPKLNQPDPSVAILDNS-TISRRG--RRRRSIYTSREARCK 241

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g01480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g01480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLI3_CUCSA5.5e-2282.54Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174140 PE=4 SV=1[more]
A0A061EN06_THECC5.9e-0860.34XB3 in, putative isoform 1 OS=Theobroma cacao GN=TCM_020902 PE=4 SV=1[more]
A5BSQ6_VITVI5.9e-0855.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01160 PE=4 SV=... [more]
A0A0B0P4Y6_GOSAR2.2e-0758.62Putative E3 ubiquitin-protein ligase XBAT35-like protein OS=Gossypium arboreum G... [more]
A0A0D2UUE7_GOSRA5.0e-0756.90Uncharacterized protein OS=Gossypium raimondii GN=B456_011G174600 PE=4 SV=1[more]
BLAST of Cp4.1LG12g01480 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23280.13.8e-0643.94 XB3 ortholog 5 in Arabidopsis thaliana[more]
BLAST of Cp4.1LG12g01480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458826|ref|XP_004147147.1|7.8e-2282.54PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Cucumis sativus][more]
gi|659121411|ref|XP_008460647.1|2.3e-2180.95PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Cucumis melo][more]
gi|296083664|emb|CBI23653.3|8.4e-0855.00unnamed protein product [Vitis vinifera][more]
gi|731389735|ref|XP_010650095.1|8.4e-0855.00PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Vitis vinifer... [more]
gi|590659456|ref|XP_007035132.1|8.4e-0860.34XB3 in, putative isoform 1 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006108 malate metabolic process
biological_process GO:0006099 tricarboxylic acid cycle
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0030060 L-malate dehydrogenase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g01480.1Cp4.1LG12g01480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g01480Cucsa.383600Cucumber (Gy14) v1cgycpeB1007
Cp4.1LG12g01480CmaCh17G001620Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g01480CmoCh17G001600Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g01480Cla007588Watermelon (97103) v1cpewmB161
Cp4.1LG12g01480Csa2G174140Cucumber (Chinese Long) v2cpecuB127
Cp4.1LG12g01480MELO3C022999Melon (DHL92) v3.5.1cpemeB137
Cp4.1LG12g01480ClCG06G007010Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g01480CSPI02G10310Wild cucumber (PI 183967)cpecpiB126
Cp4.1LG12g01480Lsi09G012320Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g01480MELO3C022999.2Melon (DHL92) v3.6.1cpemedB166
Cp4.1LG12g01480CsaV3_2G012750Cucumber (Chinese Long) v3cpecucB0145
Cp4.1LG12g01480Bhi12G001425Wax gourdcpewgoB0172
Cp4.1LG12g01480CsGy2G010390Cucumber (Gy14) v2cgybcpeB175
Cp4.1LG12g01480Carg10088Silver-seed gourdcarcpeB0322
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g01480Cucumber (Chinese Long) v3cpecucB0153
Cp4.1LG12g01480Wax gourdcpewgoB0189
Cp4.1LG12g01480Wax gourdcpewgoB0196
Cp4.1LG12g01480Cucurbita pepo (Zucchini)cpecpeB155
Cp4.1LG12g01480Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG12g01480Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g01480Cucurbita pepo (Zucchini)cpecpeB189
Cp4.1LG12g01480Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g01480Cucumber (Gy14) v1cgycpeB0670
Cp4.1LG12g01480Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g01480Cucurbita maxima (Rimu)cmacpeB519
Cp4.1LG12g01480Cucurbita maxima (Rimu)cmacpeB600
Cp4.1LG12g01480Cucurbita maxima (Rimu)cmacpeB810
Cp4.1LG12g01480Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g01480Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g01480Cucurbita moschata (Rifu)cmocpeB549
Cp4.1LG12g01480Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g01480Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g01480Wild cucumber (PI 183967)cpecpiB135
Cp4.1LG12g01480Cucumber (Chinese Long) v2cpecuB134
Cp4.1LG12g01480Bottle gourd (USVL1VR-Ls)cpelsiB120
Cp4.1LG12g01480Bottle gourd (USVL1VR-Ls)cpelsiB124
Cp4.1LG12g01480Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g01480Watermelon (Charleston Gray)cpewcgB150
Cp4.1LG12g01480Watermelon (97103) v1cpewmB147
Cp4.1LG12g01480Watermelon (97103) v1cpewmB151
Cp4.1LG12g01480Melon (DHL92) v3.5.1cpemeB143
Cp4.1LG12g01480Cucumber (Gy14) v2cgybcpeB302
Cp4.1LG12g01480Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g01480Silver-seed gourdcarcpeB0331
Cp4.1LG12g01480Silver-seed gourdcarcpeB1087
Cp4.1LG12g01480Silver-seed gourdcarcpeB1328
Cp4.1LG12g01480Silver-seed gourdcarcpeB1501