Cp4.1LG12g00690 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g00690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionActin-related protein 2/3 complex subunit 4
LocationCp4.1LG12 : 432523 .. 436925 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGAGTTTCGGTCGCATCGTATCAATAAATCTGTACTCTCACGAGCTCATTACACGATCCAAACATTTTTCTCCATCAGAGTTATCACTTCAGCGCGCGAATTTTGATCTCCGAAAAGCACTCTCTGGAATTCAGAAATGGTTAGTAACAAAGATTTCTCGTCCTTGTTGATCTTTTCTTCGTTTGAAGTTATTTATCTGAGTTGTGATAATCTTCTCCTTCAATAATAAGAAGATCGATGCGAATGAAGTTCATTTGTTTTACTTAGCATTGTCCGATTCAACTCGTTTTCTTAATGAAATTGTTGATGTTGATTTACACGGACGCTTTTGTATACGAAATGTCTTTCCGATTTCTAATTGATATCGAGATGGCTTAAGGAGGAAGCAACCTTCGCTTTGATGACTCCTGATTCTGCGTTTTCCGCTTTGATTGTGTGATTAGTTTAAGTACTTAATTGTTGAATGAGATTGATCTTTTGTTTTTGTTTTCTCTACCTAATCTTCCGTCTGTATGTGTAAACTCAGGCTAATGCTTTACGCTTGTATTTGTCGTGCATTCGGAACACTCTCGAGGCCGCTATGTGCCTTCAGGTATTTCTATCGCTGTCTTGTCGCTGTTATTTCGGTTAAATTTCGTTCGAGTTGTGATTTTTTGGAGTTTGATATATTATGTTTGGAATCGACTTATTAGGTTCTGTAAGGTTTTCTTCCTACGGACTATTTGCCTTACTAACTTGAAGAATGCGATGTTTAACTGAACTCCTTGCTTGTAATTGCTTCTTGTAAGTGAATATATTTTCATTGCAAGTCCGAACGAAAATACTTCTATACGCATGTAGGTATTCCGTTCTCCAAAAATGCACTTGGTGAGAAAATATTCACTGGATAACTGTTTGATATGTGATAATAGATCAAGAGAGTGCAGGCTTATAGTAATATTACCTCTCTAAATTTATAGTTCTCATTGAAGTAGAATGAATTCGTTGAACTCCAGTGTTGTTTCTTCTTCCGGCTTACATGTTTTCTTTTGAGAAACCTCATAGACAGCCGGGTGACTTGAGTGGCTGAACTTGGATATCCTTCGAAGTCACCAGTATCTGCGTTAAGAGTAGTGAATATTAAGTATTTTCTTTTAGTACATTGAGTTGGGAGTGAATGAAGTGTGCACATGACCAGTTATATTTGTGTACAGTGTTTCTCGCTGGAATTTTTTTGAAATTTTTTGTTTCACTTTGGATATTTGCTTTCTATCTAATATAACTCTCTCCTTGTCTGATTCACTTTCACATGCGTATGATGTTTGATTTATCATACTTTTTTCTTTTTTCATCTGATTACAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCAGAGGTTGAACTAAAGTATGGTTAAGTCTTCTAGTTCATCCTAAAACCTTATTTTGAATTTATTACAGATATATCCTTGTTTGTGAGCCACTCTGGAGACCTGAATTTCCTAGTTAATGAATTCATTCATGAACCTATTGCGACCATTCTTGGGATCACTTTATGAAAGCTTTTAGTCTTGGGGATGTCTGATAGCCATTTGCTTTCAACATTCATAGTTATAACTTTGTGATTATAATTCTATAATATAGATCATATCTGGTTACTGCATAGTTTTGTTGTCAGTCGTCACTTGACTTAATAGCATTTTCTTGTTGGTTGGCTTTTGCCATGTCTAAGCATGTATTGGTGAGTTGAACATGTGTTGGTAGTTGGTTAATACCTATCTGTCTTGCTGACTTGCATAAATACCTGCCATGCTAAGGCAGATAAATGATAACAACTTCTCAGAAACACTAATACGCCATTCTCCAAATCTTATTAGTTTTTCGTTATACCATGCTAATTGAATTTTACGTGGAATGCAATTATTAAAATTTGCTAATTTATGTCGGCTCTTATTTTCTTGATCTTTACCCATTCCAGGACCAGCTCAGAACTTATTCTCAATCCTGTAAGTTTCAGCATTCCACCTTTAGTGATGATTATGATGAACATTTCGGAAACATCAAGCATTTATTTTCATCTTTGATTTTCAGATTAGAACTTCGTTATGCCTCATTATAGAGAACTGTTTTCTGTGATGGAATTTTTTAATCTTTCCCATGGGTATACATTTCGTCTGCATCTGCAACATGTCAGCCAGTGTATATTATTCTAGTTAAACATTTGTCCTTCCTTTGTTGCTTTTAATTGGAAAATCATGTCAATGCAAAAGAATATCCTTGGGAGTTGGGAGTAGTCGGGGAATGGTTTCTTATTATTATTATTTTTTTTGTTAACTGTGATATGTTGATGGACACCAATGATCTCGCTTCAATATATTGCTCGTGCAGATCCTAATATGTAGAAATGAGTCAGAGAAGTGTTTGATTGAGACATCTATAAACTCCCTCCGGATCAGTCTCAAGGTGATTTTATTCCTTTTATTTTAATTTGATGCATTTGAGGCATTATATGGCCATAAGTCCCTTTCTGCCCCATTAGGCTAAATCCTTCAATCTTTTCCATTATACCTGAAGAAACACTGTGCTGATTTATGCAATTATCATCACAAATTACCACAAACTTGTTCACAATTATTTTATGTGAACTCTTTCTTGTGCACAGGTTAAACAGACAGATGAACTGGAGAACATCCTCACTAAAAAGTTCCTACGATTTCTGTCAATGAGGGCAGAAGCTTTCCAGGTGCTGAGAAGAAAACCTGTACAGGTACTGATAGTGTCTAATCATGAAGTTAACTTTCTGCTTTAGTTTAAGATGATATATTATAGCGACTGCGGTGTATTCTCTGAAAAAACTTTCAACAATTGGAGATTATTTTTGATTAATTACTTCAAAACACTTGGAGCTGTACTACTATGATGATTGTGTTTTCTGACTTTTCAAGTTACCACGAACTCATATTTCATATCTCTTCGAGGGCATGAGATTAAAACTGGCTCACCCCTTATTGAACGAAAACTGAAAGGGGAGTTGCCTCATGCTTCCTCTGGAGATATATATATATTTTTTCTCAACAAGCATTGAAACTTGTACTCAGATAGTTGTAAGAAATAATTTTATACTTAAAAATGATCTATCCATATATATGTTTTGGTATTAAACCTTTATAGCCATGCATGTCTTGTGGTGAAGCTTCAAAGATTCTGGATGAATTATTTACTATCTTCTTCTCTCTTCTTTTTTCCAATATGAACTACTTCTTCCCAATCAGATAATATTTCAGATTGCTATTCTTGTTTGCCAAACATATGTGTGTCTTTCAGAATTGATCTTTCTGTTTCCTTATGGCTTCATTTTACAGGGATACGACATTAGCTTTCTCATAACAAACTATCATTGTGAGGAGCTGCAGAAGCAAAAGCTCATTGATTTTATTGTACAGTTTATGGAGGCAAGAATTTTAACACTGCCGAAATATCTCCTTGATTTGCTTTTCTTTTCTTACTACCCAACCTTCTCCAATTTACCCTTTCAAACAAACTTCCCATTGCTGGGGGCGTCGTAATATCCTAACTAAGTTTGAATAATATATTTTTTTCTTTCCTTTTTTTGCAGGATATTGATAAAGAGATAAGTGAACTTAAAATGTCCGTGAACACTCGGGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATTTGATGTCTCTCTCTCTCTCTCTCTCATATATATATCCTGGTAAACTTCCATTCCCCTGCTTGTTATATATATATACGTATATTTATATATGATTTGTTTCCATTTATTTTTTATGGTACTTAATTTTCATACAACATTCATGGGGTTTGGACTTGACCCAGAAAAATACACTGTGGGTGAAATAAGCTATATATATATATATATATATATATATAGTCTCGTTACAGCAAATTATTCCTTAAAACTCGACCACAGTTCTCATGACAAATTATTCCTTCCACAATTTCTTGTCCGTACAACCTGTTTGGATTGATTTAGCTTTTGGACTTCAAACCCTTGGGCTTTCTACATAGAAAGGGCCATTTTTTCATCCGAATTCATAATCTCTGTAGAGACGTCTTAAATGTCGAGCAATGTGTTAAATAAATCCACATGGTATTTTCCTCTTAGGTTAAGAGGTAGGTCCAGTGGATAGGTTTGATTATTTATTTATTTGTTTTTATTTGGACGCTTTGATGATTTGCAGAGTTGCTCATTGCAAATTGCCTGCCATTGTTGAGAGTTTGGATGGGGATCGTTACATCCAATAATTATGTTGCTGTAAGTAATTATTGCCCCTTCTGCATCGTCTGTACTCAAAATCTCTTTGCTTTGCTTAATCCACTTTTTCTGATGATAACATACTGTTTTTATTAGGTTTCATTTTTGGCCT

mRNA sequence

TTGGAGTTTCGGTCGCATCGTATCAATAAATCTGTACTCTCACGAGCTCATTACACGATCCAAACATTTTTCTCCATCAGAGCTAATGCTTTACGCTTGTATTTGTCGTGCATTCGGAACACTCTCGAGGCCGCTATGTGCCTTCAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCAGAGGTTGAACTAAAGACCAGCTCAGAACTTATTCTCAATCCTATCCTAATATGTAGAAATGAGTCAGAGAAGTGTTTGATTGAGACATCTATAAACTCCCTCCGGATCAGTCTCAAGGTTAAACAGACAGATGAACTGGAGAACATCCTCACTAAAAAGTTCCTACGATTTCTGTCAATGAGGGCAGAAGCTTTCCAGGTGCTGAGAAGAAAACCTGTACAGGGATACGACATTAGCTTTCTCATAACAAACTATCATTGTGAGGAGCTGCAGAAGCAAAAGCTCATTGATTTTATTGATATTGATAAAGAGATAAGTGAACTTAAAATGTCCGTGAACACTCGGGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATTTGATGTCTCTCTCTCTCTCTCTCTCATATATATATCCTGAGTTGCTCATTGCAAATTGCCTGCCATTGTTGAGAGTTTGGATGGGGATCGTTACATCCAATAATTATGTTGCTGTAAGTAATTATTGCCCCTTCTGCATCGTCTGTACTCAAAATCTCTTTGCTTTGCTTAATCCACTTTTTCTGATGATAACATACTGTTTTTATTAGGTTTCATTTTTGGCCT

Coding sequence (CDS)

TTGGAGTTTCGGTCGCATCGTATCAATAAATCTGTACTCTCACGAGCTCATTACACGATCCAAACATTTTTCTCCATCAGAGCTAATGCTTTACGCTTGTATTTGTCGTGCATTCGGAACACTCTCGAGGCCGCTATGTGCCTTCAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCAGAGGTTGAACTAAAGACCAGCTCAGAACTTATTCTCAATCCTATCCTAATATGTAGAAATGAGTCAGAGAAGTGTTTGATTGAGACATCTATAAACTCCCTCCGGATCAGTCTCAAGGTTAAACAGACAGATGAACTGGAGAACATCCTCACTAAAAAGTTCCTACGATTTCTGTCAATGAGGGCAGAAGCTTTCCAGGTGCTGAGAAGAAAACCTGTACAGGGATACGACATTAGCTTTCTCATAACAAACTATCATTGTGAGGAGCTGCAGAAGCAAAAGCTCATTGATTTTATTGATATTGATAAAGAGATAAGTGAACTTAAAATGTCCGTGAACACTCGGGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATTTGA

Protein sequence

LEFRSHRINKSVLSRAHYTIQTFFSIRANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEELQKQKLIDFIDIDKEISELKMSVNTRGRLVATEFLKQFI
Homology
[Close]
BLAST of Cp4.1LG12g00690 vs. Swiss-Prot
Match: ARPC4_ARATH (Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana GN=ARPC4 PE=1 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.7e-78
Identity = 149/168 (88.69%), Postives = 159/168 (94.64%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           AN+LRLYL+CI+NTLEAAMCLQNFPCQEVERHNKPEVELKTS EL+LNP+LICRNE+EKC
Sbjct: 2   ANSLRLYLACIKNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQ DELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCEE+QKQKLIDFI     DI+KEI +LK SVNTRGRLVATEFLKQF+
Sbjct: 122 HCEEMQKQKLIDFIIQFMEDIEKEIRDLKESVNTRGRLVATEFLKQFM 169

[Close]
BLAST of Cp4.1LG12g00690 vs. Swiss-Prot
Match: ARPC4_DICDI (Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.4e-55
Identity = 105/161 (65.22%), Postives = 136/161 (84.47%), Query Frame = 1 

Query: 34  YLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKCLIETSI 93
           YL+CIRNTL A+MCLQNF  Q VERHNKPEVE+KTS EL+LNP++I RN++E+ LIETSI
Sbjct: 8   YLNCIRNTLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNERVLIETSI 67

Query: 94  NSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEELQ 153
           NS+RIS+ +K++DE++ IL KKF+RFL  RAE F +LRRKPV+GYDISFL+TN+H E + 
Sbjct: 68  NSIRISVSIKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVEGYDISFLVTNFHTENMF 127

Query: 154 KQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQF 190
           K KL+DFI     DID+EIS+LK+++N RGR+VA+E+LK F
Sbjct: 128 KHKLVDFIIQFMEDIDREISDLKLTLNARGRIVASEYLKNF 168

[Close]
BLAST of Cp4.1LG12g00690 vs. Swiss-Prot
Match: ARPC4_BOVIN (Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 209.1 bits (531), Expect = 4.1e-53
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 1 

Query: 31  LRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKCLIE 90
           LR YLS +R TL+AA+CL+NF  Q VERHNKPEVE+++S EL+L P+ I RNE EK LIE
Sbjct: 5   LRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIE 64

Query: 91  TSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCE 150
            SINS+R+S+ VKQ DE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H E
Sbjct: 65  GSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTE 124

Query: 151 ELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQF 190
           ++ K KL+DF+     +IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 125 QMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

[Close]
BLAST of Cp4.1LG12g00690 vs. Swiss-Prot
Match: ARPC4_HUMAN (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 209.1 bits (531), Expect = 4.1e-53
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 1 

Query: 31  LRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKCLIE 90
           LR YLS +R TL+AA+CL+NF  Q VERHNKPEVE+++S EL+L P+ I RNE EK LIE
Sbjct: 5   LRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIE 64

Query: 91  TSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCE 150
            SINS+R+S+ VKQ DE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H E
Sbjct: 65  GSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTE 124

Query: 151 ELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQF 190
           ++ K KL+DF+     +IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 125 QMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

[Close]
BLAST of Cp4.1LG12g00690 vs. Swiss-Prot
Match: ARPC4_MOUSE (Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3)

HSP 1 Score: 209.1 bits (531), Expect = 4.1e-53
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 1 

Query: 31  LRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKCLIE 90
           LR YLS +R TL+AA+CL+NF  Q VERHNKPEVE+++S EL+L P+ I RNE EK LIE
Sbjct: 5   LRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIE 64

Query: 91  TSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCE 150
            SINS+R+S+ VKQ DE+E IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H E
Sbjct: 65  GSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTE 124

Query: 151 ELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQF 190
           ++ K KL+DF+     +IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 125 QMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

[Close]
BLAST of Cp4.1LG12g00690 vs. TrEMBL
Match: A0A0A0LHM5_CUCSA (Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus GN=Csa_2G120960 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.8e-79
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           A  LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSEL+LNPILICRNESEKC
Sbjct: 2   ATTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCE++QKQKLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cp4.1LG12g00690 vs. TrEMBL
Match: A0A061EK66_THECC (Actin-related protein 2/3 complex subunit 4 OS=Theobroma cacao GN=TCM_020286 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.8e-79
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           AN LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTS EL+LNP+LICRNE+EKC
Sbjct: 2   ANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQ DELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCEE+QKQKLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEEMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cp4.1LG12g00690 vs. TrEMBL
Match: B9RWE0_RICCO (Actin-related protein 2/3 complex subunit 4 OS=Ricinus communis GN=RCOM_1018440 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 8.8e-79
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           AN LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTS EL+LNPILICRNE+EKC
Sbjct: 2   ANPLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQ DELENILTKKFLRFLSMRAEAFQVLRRKP+QGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPIQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCEE+QKQKLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEEMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cp4.1LG12g00690 vs. TrEMBL
Match: C6T593_SOYBN (Actin-related protein 2/3 complex subunit 4 OS=Glycine max GN=GLYMA_08G111500 PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.6e-78
Identity = 154/168 (91.67%), Postives = 159/168 (94.64%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           AN LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTS EL+LNP+LICRNE+EKC
Sbjct: 2   ANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQ DELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCEE+QK KLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cp4.1LG12g00690 vs. TrEMBL
Match: A0A0B2SST4_GLYSO (Actin-related protein 2/3 complex subunit 4 OS=Glycine soja GN=glysoja_015420 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 7.5e-78
Identity = 153/168 (91.07%), Postives = 158/168 (94.05%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           AN LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTS EL+LNP+LICRNE+EKC
Sbjct: 2   ANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRI LKVKQ DELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRIGLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCEE+QK KLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cp4.1LG12g00690 vs. TAIR10
Match: AT4G14147.2 (AT4G14147.2 protein binding)

HSP 1 Score: 253.1 bits (645), Expect = 1.4e-67
Identity = 125/134 (93.28%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           AN+LRLYL+CI+NTLEAAMCLQNFPCQEVERHNKPEVELKTS EL+LNP+LICRNE+EKC
Sbjct: 2   ANSLRLYLACIKNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQ DELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI 162
           HCEE+QKQKLIDFI
Sbjct: 122 HCEEMQKQKLIDFI 135

[Close]
BLAST of Cp4.1LG12g00690 vs. NCBI nr
Match: gi|659114636|ref|XP_008457157.1| (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 2.0e-79
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           A +LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSEL+LNPILICRNESEKC
Sbjct: 2   ATSLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCE++QKQKLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cp4.1LG12g00690 vs. NCBI nr
Match: gi|778668280|ref|XP_011649071.1| (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.6e-79
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           A  LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSEL+LNPILICRNESEKC
Sbjct: 2   ATTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCE++QKQKLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cp4.1LG12g00690 vs. NCBI nr
Match: gi|590656578|ref|XP_007034310.1| (Binding isoform 1 [Theobroma cacao])

HSP 1 Score: 301.6 bits (771), Expect = 9.7e-79
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           AN LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTS EL+LNP+LICRNE+EKC
Sbjct: 2   ANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQ DELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCEE+QKQKLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEEMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cp4.1LG12g00690 vs. NCBI nr
Match: gi|659112288|ref|XP_008456148.1| (PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo])

HSP 1 Score: 301.6 bits (771), Expect = 9.7e-79
Identity = 155/168 (92.26%), Postives = 161/168 (95.83%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           A  LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSEL+LNPILICRNESEKC
Sbjct: 2   ATTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKV+QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVRQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCE++QKQKLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQF+
Sbjct: 122 HCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFL 169

[Close]
BLAST of Cp4.1LG12g00690 vs. NCBI nr
Match: gi|255554038|ref|XP_002518059.1| (PREDICTED: actin-related protein 2/3 complex subunit 4 [Ricinus communis])

HSP 1 Score: 301.2 bits (770), Expect = 1.3e-78
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 28  ANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKC 87
           AN LRLYL+CIRNTLEAAMCLQNFPCQEVERHNKPEVELKTS EL+LNPILICRNE+EKC
Sbjct: 2   ANPLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKC 61

Query: 88  LIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 147
           LIETSINSLRISLKVKQ DELENILTKKFLRFLSMRAEAFQVLRRKP+QGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPIQGYDISFLITNY 121

Query: 148 HCEELQKQKLIDFI-----DIDKEISELKMSVNTRGRLVATEFLKQFI 191
           HCEE+QKQKLIDFI     DIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 122 HCEEMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g00690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARPC4_ARATH3.7e-7888.69Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana GN=ARPC4 PE=... [more]
ARPC4_DICDI4.4e-5565.22Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD ... [more]
ARPC4_BOVIN4.1e-5364.02Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3[more]
ARPC4_HUMAN4.1e-5364.02Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3[more]
ARPC4_MOUSE4.1e-5364.02Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3[more]
BLAST of Cp4.1LG12g00690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHM5_CUCSA1.8e-7993.45Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus GN=Csa_2G120960 P... [more]
A0A061EK66_THECC6.8e-7992.26Actin-related protein 2/3 complex subunit 4 OS=Theobroma cacao GN=TCM_020286 PE=... [more]
B9RWE0_RICCO8.8e-7992.26Actin-related protein 2/3 complex subunit 4 OS=Ricinus communis GN=RCOM_1018440 ... [more]
C6T593_SOYBN2.6e-7891.67Actin-related protein 2/3 complex subunit 4 OS=Glycine max GN=GLYMA_08G111500 PE... [more]
A0A0B2SST4_GLYSO7.5e-7891.07Actin-related protein 2/3 complex subunit 4 OS=Glycine soja GN=glysoja_015420 PE... [more]
BLAST of Cp4.1LG12g00690 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14147.21.4e-6793.28 protein binding[more]
BLAST of Cp4.1LG12g00690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114636|ref|XP_008457157.1|2.0e-7993.45PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo][more]
gi|778668280|ref|XP_011649071.1|2.6e-7993.45PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativ... [more]
gi|590656578|ref|XP_007034310.1|9.7e-7992.26Binding isoform 1 [Theobroma cacao][more]
gi|659112288|ref|XP_008456148.1|9.7e-7992.26PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo][more]
gi|255554038|ref|XP_002518059.1|1.3e-7892.26PREDICTED: actin-related protein 2/3 complex subunit 4 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0034314Arp2/3 complex-mediated actin nucleation
GO:0030041actin filament polymerization
Vocabulary: Cellular Component
TermDefinition
GO:0015629actin cytoskeleton
GO:0005885Arp2/3 protein complex
Vocabulary: INTERPRO
TermDefinition
IPR008384ARPC4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030041 actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
molecular_function GO:0003779 actin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g00690.1Cp4.1LG12g00690.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008384Actin-related protein 2/3 complex subunit 4PIRPIRSF039100ARPC4coord: 27..190
score: 2.3
IPR008384Actin-related protein 2/3 complex subunit 4PANTHERPTHR22629ARP2/3 COMPLEX 20 KD SUBUNITcoord: 5..190
score: 2.5E
IPR008384Actin-related protein 2/3 complex subunit 4PFAMPF05856ARPC4coord: 28..188
score: 1.7
NoneNo IPR availableGENE3DG3DSA:3.30.1460.20coord: 28..189
score: 7.8
NoneNo IPR availableunknownSSF69645Arp2/3 complex subunitscoord: 30..189
score: 4.51

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g00690Cucsa.266050Cucumber (Gy14) v1cgycpeB0698
Cp4.1LG12g00690Cla010569Watermelon (97103) v1cpewmB161
Cp4.1LG12g00690Csa2G120960Cucumber (Chinese Long) v2cpecuB128
Cp4.1LG12g00690MELO3C020359Melon (DHL92) v3.5.1cpemeB135
Cp4.1LG12g00690ClCG06G008050Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g00690CSPI02G08760Wild cucumber (PI 183967)cpecpiB127
Cp4.1LG12g00690Lsi09G011130Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g00690MELO3C020359.2Melon (DHL92) v3.6.1cpemedB162
Cp4.1LG12g00690CsaV3_2G011130Cucumber (Chinese Long) v3cpecucB0146
Cp4.1LG12g00690Bhi12G001271Wax gourdcpewgoB0176
Cp4.1LG12g00690CsGy2G009020Cucumber (Gy14) v2cgybcpeB176
Cp4.1LG12g00690Carg10159Silver-seed gourdcarcpeB0322
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g00690Silver-seed gourdcarcpeB1328
Cp4.1LG12g00690Silver-seed gourdcarcpeB1498
Cp4.1LG12g00690Silver-seed gourdcarcpeB1501
Cp4.1LG12g00690Cucumber (Chinese Long) v3cpecucB0153
Cp4.1LG12g00690Wax gourdcpewgoB0192
Cp4.1LG12g00690Cucurbita pepo (Zucchini)cpecpeB161
Cp4.1LG12g00690Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g00690Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g00690Cucumber (Gy14) v1cgycpeB0670
Cp4.1LG12g00690Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g00690Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g00690Cucurbita maxima (Rimu)cmacpeB811
Cp4.1LG12g00690Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g00690Cucurbita maxima (Rimu)cmacpeB907
Cp4.1LG12g00690Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g00690Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g00690Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g00690Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g00690Cucurbita moschata (Rifu)cmocpeB843
Cp4.1LG12g00690Wild cucumber (PI 183967)cpecpiB136
Cp4.1LG12g00690Cucumber (Chinese Long) v2cpecuB135
Cp4.1LG12g00690Bottle gourd (USVL1VR-Ls)cpelsiB122
Cp4.1LG12g00690Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g00690Watermelon (97103) v1cpewmB151
Cp4.1LG12g00690Melon (DHL92) v3.5.1cpemeB141
Cp4.1LG12g00690Cucumber (Gy14) v2cgybcpeB175
Cp4.1LG12g00690Cucumber (Gy14) v2cgybcpeB304
Cp4.1LG12g00690Melon (DHL92) v3.6.1cpemedB170