Cp4.1LG12g00350 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g00350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 146017 .. 146346 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTAGGAAGTCGGTCCAACTAGGTTGTTATGCTAGGAAGTTGTTTGATGTTTGAATATTCATTCACTAAATAAATCTTAAACTTGGGAGCATCATATTATGTTTATGAGTTGGTTATTTATTTGAAGTTGAGAGATTGAACAAACACAACTGGTTTGGCTACACGTCTTTGAAAGATATTAAAGGCTACATATTCAGTAATGTCGCATCGACGAAGCTTTTGGATTCTAGTTTTCCATACAAATATTGTATTAAAGAAATGTTTGATGGAGCAATCGAAAGCTACAAAGAGAAAGGTTACCTGTATGAAACGAAGGAGAAGTAG

mRNA sequence

ATGGAATTTAGGAAGTCGGTCCAACTAGTTGAGAGATTGAACAAACACAACTGGTTTGGCTACACGTCTTTGAAAGATATTAAAGGCTACATATTCAGTAATGTCGCATCGACGAAGCTTTTGGATTCTAGTTTTCCATACAAATATTGTATTAAAGAAATGTTTGATGGAGCAATCGAAAGCTACAAAGAGAAAGGTTACCTGTATGAAACGAAGGAGAAGTAG

Coding sequence (CDS)

ATGGAATTTAGGAAGTCGGTCCAACTAGTTGAGAGATTGAACAAACACAACTGGTTTGGCTACACGTCTTTGAAAGATATTAAAGGCTACATATTCAGTAATGTCGCATCGACGAAGCTTTTGGATTCTAGTTTTCCATACAAATATTGTATTAAAGAAATGTTTGATGGAGCAATCGAAAGCTACAAAGAGAAAGGTTACCTGTATGAAACGAAGGAGAAGTAG

Protein sequence

MEFRKSVQLVERLNKHNWFGYTSLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYLYETKEK
Homology
[Close]
BLAST of Cp4.1LG12g00350 vs. TrEMBL
Match: A0A0A0K9S9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077400 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.9e-10
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLKD+KGYIF++V+S KLLD+ F YKY ++EM DGAI+S KEKGYL
Sbjct: 283 SLKDVKGYIFTDVSSKKLLDAGFQYKYGVEEMLDGAIQSCKEKGYL 328

[Close]
BLAST of Cp4.1LG12g00350 vs. TrEMBL
Match: A0A059C435_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01436 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-06
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLK++KG  F  ++S KLLD+ F YKY I++MFDGAI+  KEKGYL
Sbjct: 282 SLKELKGPRFPRLSSRKLLDAGFEYKYRIEDMFDGAIQCCKEKGYL 327

[Close]
BLAST of Cp4.1LG12g00350 vs. TrEMBL
Match: A0A059C491_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01429 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-06
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLK++KG  F+++AS KLLD+ F YKY I++MFDGAI+  K KGYL
Sbjct: 282 SLKEVKGPRFASLASRKLLDAGFEYKYGIEDMFDGAIQCCKGKGYL 327

[Close]
BLAST of Cp4.1LG12g00350 vs. TrEMBL
Match: A0A059C4Y7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01427 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-06
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLK++KG  F+++AS KLLD+ F YKY I++MFDGAI+  K KGYL
Sbjct: 241 SLKEVKGPRFASLASRKLLDAGFEYKYGIEDMFDGAIQCCKGKGYL 286

[Close]
BLAST of Cp4.1LG12g00350 vs. TrEMBL
Match: A0A059C3G9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01436 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-06
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLK++KG  F  ++S KLLD+ F YKY I++MFDGAI+  KEKGYL
Sbjct: 265 SLKELKGPRFPRLSSRKLLDAGFEYKYRIEDMFDGAIQCCKEKGYL 310

[Close]
BLAST of Cp4.1LG12g00350 vs. NCBI nr
Match: gi|659120303|ref|XP_008460121.1| (PREDICTED: vestitone reductase-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-10
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLKD+KGYIF++V+S KLLD+ F YKY I+EM DGAIES KEKGYL
Sbjct: 283 SLKDVKGYIFTDVSSKKLLDAGFQYKYGIEEMLDGAIESCKEKGYL 328

[Close]
BLAST of Cp4.1LG12g00350 vs. NCBI nr
Match: gi|449454518|ref|XP_004145001.1| (PREDICTED: vestitone reductase-like [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLKD+KGYIF++V+S KLLD+ F YKY ++EM DGAI+S KEKGYL
Sbjct: 283 SLKDVKGYIFTDVSSKKLLDAGFQYKYGVEEMLDGAIQSCKEKGYL 328

[Close]
BLAST of Cp4.1LG12g00350 vs. NCBI nr
Match: gi|702518083|ref|XP_010042357.1| (PREDICTED: vestitone reductase-like [Eucalyptus grandis])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLK++KG  F+ ++S KLLD+ F YKY I++MFDGAI+  KEKGYL
Sbjct: 249 SLKEVKGPRFTRLSSRKLLDAGFEYKYGIEDMFDGAIQCCKEKGYL 294

[Close]
BLAST of Cp4.1LG12g00350 vs. NCBI nr
Match: gi|702340832|ref|XP_010056315.1| (PREDICTED: vestitone reductase-like [Eucalyptus grandis])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLK++KG  F+++AS KLLD+ F YKY I++MFDGAI+  K KGYL
Sbjct: 282 SLKEVKGPRFASLASRKLLDAGFEYKYGIEDMFDGAIQCCKGKGYL 327

[Close]
BLAST of Cp4.1LG12g00350 vs. NCBI nr
Match: gi|702354613|ref|XP_010058461.1| (PREDICTED: vestitone reductase-like [Eucalyptus grandis])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 23  SLKDIKGYIFSNVASTKLLDSSFPYKYCIKEMFDGAIESYKEKGYL 69
           SLK++KG  F+++AS KLLD+ F YKY I++MFDGAI+  K KGYL
Sbjct: 264 SLKEVKGPRFASLASRKLLDAGFEYKYGIEDMFDGAIQCCKGKGYL 309

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g00350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g00350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9S9_CUCSA9.9e-1069.57Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077400 PE=4 SV=1[more]
A0A059C435_EUCGR2.3e-0660.87Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01436 PE=4 SV=1[more]
A0A059C491_EUCGR2.3e-0660.87Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01429 PE=4 SV=1[more]
A0A059C4Y7_EUCGR2.3e-0660.87Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01427 PE=4 ... [more]
A0A059C3G9_EUCGR2.3e-0660.87Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01436 PE=4 SV=1[more]
BLAST of Cp4.1LG12g00350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g00350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120303|ref|XP_008460121.1|4.9e-1073.91PREDICTED: vestitone reductase-like [Cucumis melo][more]
gi|449454518|ref|XP_004145001.1|1.4e-0969.57PREDICTED: vestitone reductase-like [Cucumis sativus][more]
gi|702518083|ref|XP_010042357.1|1.5e-0660.87PREDICTED: vestitone reductase-like [Eucalyptus grandis][more]
gi|702340832|ref|XP_010056315.1|3.3e-0660.87PREDICTED: vestitone reductase-like [Eucalyptus grandis][more]
gi|702354613|ref|XP_010058461.1|3.3e-0660.87PREDICTED: vestitone reductase-like [Eucalyptus grandis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050662 coenzyme binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g00350.1Cp4.1LG12g00350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g00350CsaV3_6G006200Cucumber (Chinese Long) v3cpecucB0167
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g00350Cucurbita pepo (Zucchini)cpecpeB174
Cp4.1LG12g00350Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g00350Cucumber (Gy14) v1cgycpeB0670
Cp4.1LG12g00350Cucumber (Gy14) v1cgycpeB0947
Cp4.1LG12g00350Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g00350Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g00350Cucurbita maxima (Rimu)cmacpeB811
Cp4.1LG12g00350Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g00350Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g00350Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g00350Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g00350Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g00350Wild cucumber (PI 183967)cpecpiB136
Cp4.1LG12g00350Wild cucumber (PI 183967)cpecpiB145
Cp4.1LG12g00350Cucumber (Chinese Long) v2cpecuB135
Cp4.1LG12g00350Cucumber (Chinese Long) v2cpecuB143
Cp4.1LG12g00350Bottle gourd (USVL1VR-Ls)cpelsiB104
Cp4.1LG12g00350Bottle gourd (USVL1VR-Ls)cpelsiB122
Cp4.1LG12g00350Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g00350Watermelon (Charleston Gray)cpewcgB141
Cp4.1LG12g00350Watermelon (97103) v1cpewmB151
Cp4.1LG12g00350Watermelon (97103) v1cpewmB157
Cp4.1LG12g00350Melon (DHL92) v3.5.1cpemeB115
Cp4.1LG12g00350Melon (DHL92) v3.5.1cpemeB141
Cp4.1LG12g00350Cucumber (Gy14) v2cgybcpeB304
Cp4.1LG12g00350Cucumber (Gy14) v2cgybcpeB723
Cp4.1LG12g00350Melon (DHL92) v3.6.1cpemedB141
Cp4.1LG12g00350Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g00350Silver-seed gourdcarcpeB0322
Cp4.1LG12g00350Silver-seed gourdcarcpeB0881
Cp4.1LG12g00350Silver-seed gourdcarcpeB1501
Cp4.1LG12g00350Cucumber (Chinese Long) v3cpecucB0153
Cp4.1LG12g00350Wax gourdcpewgoB0182