Cp4.1LG12g00310 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g00310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 103343 .. 107939 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTAAGGAATCTGCTTAACCGACTTCGTGTAACTCGAATCGAGTTTAGATCCAGGCGCAGCGGAGCCGAATGCGACCTTACCGCCCTGGAGATCGGTAATGTTCACGAAACCTAGATTTCCAGGCGCGTGGCCAGTTGTCTGGTAGAGCGTGGTCGAGAGAGTGGTTCCGTTGGAGATCTTGTGGAGTTTGGCAGGATCGTAGTAGTCCAGGACAATGTGGAGACTGAGGAAGTTTTTGATGACGGAGAGAGGATGTTTGGCCACAACGGAGGAGAGAGCGCCATTGGAGACAACGAGGATGGTGATAGTCTGCCGGCTGTTAATCTCGTCGGCGAGTCTGGTCTGCTGCAGGTAGTTGCTGTAATCGCTATACTCCGGGAAATCCTTAAGAATGTCGGTAATATTGTGGGCGGAGACGGCGGTGGCTGCGGCGAGGGCGAGGAAGAAGAAAAGGGATTTGGAGGCCGCCATGGGAGAAGGGAGAGGAGAAACAGACGGAGGAGGAGTAGGAAAGAACGGGGGTTTAAGGGAGTGGAGAGGGTATAAAAGGGAGAGTAGTTAAGTTAGCTAACTAGGGTTAGAGGGAAGTTAACTACAGTTAAGGGTATTTTGGGGAATGTAGGATAAAGGAGGCAAGGCGCTTTTGTACACAGCTGGAAATAACAAAAGTGGTTTATGTGCTTGGCGTATGGCACAGAGGTGGCTTCTTGCTTTCTCTTACTTTAGGCGAAATTACCCTCTTGTCCCTGAGCTTACCACTTGCAATAGTTANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGGGGGCGGGGTCAACGGTCACATTACTAACGGTAAACAGAGAAGAACGTTGAGAGTTTGGTTTTTTGGTGGGAGTTCTTTTTTTTTTTTTCTGTTTCATTTTAATTATTCTGAAAGTTTGAATTTTGTTGTGAAATGTTTTACTATTATTATTATTATTTTTAGTAAACAATACTTTGGTTTCAATTTATGCTTAAGTTGTAATTATATTAGTTCCTAAAGCTTAACATAAATGGTTTTATAAAAAGAGAGATACCATAGGTTTAAAGGAAAAGATGCCACATAATCTAATAATAATACTAAGAATTAACTTTCTCATATCATATAAAATATTTTACATAGATTCAAAGAGCCATTTAGAATTTAAATTAATATTATAAACAATGTCAATGTTATTTTTTTCTAACTCTAGTATCAATTGCCACATCAATTTTACATCAAAATTAAAGATTATATTGAAAAATTCCAAAATCTAGAAGCACAATTGAAACATATGTACTAGAAATTTTACCATTATAATTCAATTAGAAATACCTAATGTTTTATCAAATTCATACATATCAATAAACGATAAAAAGAAAACATTGGATCCATAAGAAACCTATTAATCTCATATGAAGTAAAAGAAGAGCATAAGATGGGGTTAGCTTTCGTCACAGAATCTGTTTCTGATAAGATTTTCAGAATCTGACCTTTGGTTTCTGAGTTGATTGCTTGGTAATTTATAGAACAAATCTTCCCTTTTAGACAACATTCTGATAACTCTCCAGCAACTCCTCTTTGGGGCTAGTGATGCGGCGAGAGAATCCCATTGCCAGCTTATCGCACCCCTAATGGAACAAAATCTGCTGCTGCCCCAACACAACCACCACCATTAATGCAAATCCAGCTGCCAACTAAGAATGCTGAGCTATTCAAAGATGCCAGTTCAAAAAGAGTTTCATCACGATTCTATTTCAAGTTTTCCAGGTTGTTTTGGAAGAGTAGCTCAAAATAATTTTCAAAAGATGTCATATTCTAGCAAACAGACACACAATGCATTATATATCTTAGTTTCAAATATTCATGGCTAAATTATGAAAGAAAAAATTGTCCCTAGTTTCATAAGTACACCTATACTTTTAAAAGTTACAATATTAAAACTCTTGACCTATACTTTTAAAAGTTACAATATTAAAACTCTCGACATTACATAATCATTGTTTCAAAATTATACTAAAATGAAACTTGAAACAAATTCTAAGAGATTTCTACTTCAATAGTAATTTTGAAAAGTTTCTAAAAATGAAGTAAAATATTGTAATTTCTTTTTAAGTATAGATTTATAGGGATAATTGAAGGATAATTTTTTAAAAAATTTAACCAATATTCATCACGATGCATAAAATGTGAAAGGTAATGTTAACTTTGAGACTTAAAAGCAATGAGATGATAGCATAGATCTTAAAACAATGTGATGAAAGCATAGAAGGTAAATTAGAATCCAAATACAGCCACACTGTCACAGTTTGTTTCTATTGATTGTATATACTTCAGAAAATTAAGAGGCTAAGCTTTAACAACTAAATGTAGTTCAGACTCTTGTAAAAGGAAACAAAGGGAACGGAATGATCGTAAACTTACAATTAAACAGCTGGTGATATAGTCATTGAAGGTATTTGCAACCCTGGCCTTGAGGTCCATCCCTTGCGGTTTCTATATTCAGTTATAGCCTGCAATCGCTTCCTCTCTTGAGAAGCAACTTGTGCAGATTTAAACGCCTATATGAAACATAGGAACAACAAAATTGTCAAGTACCCAAATCGGAGTGTTCATTTATCATTTAACTTGACCATGTAGAGTTAGATGTTACCTTCGGAACTGCAGTCAACTTCAATGGAGCTTCAACCACGTCACCAAATTTTATTTTTTCATGTCTTGGGAAGTCTAGATCCTCGTCTGTCTTGCCTTTCTTGTGTTTATTTTTCTTAGCCTCGTGATATCTATTTAGAAATAAACGTAATGGATCAGTTAAAAAAAGGGAACAAATGCTTCCCAGTTCACCAAGTTTCTACAATAGACCTACTATAACATGGTACATGACAAATGCAATCGAAATGACCACGATTAGAATACTGAAAATGGGTAGATAACTAGTGCATAATTTGTAATAGCCTAAAGTTCAATTGAATAACCAGAGGATTAGGATATACTTCTAGAAAACCATGAGAAAACTGGTTGAAACATTGGAATTATATTTGAGAGTCCTTTCATCTCTCTGAATTACATACAAATTCCTTGCTTTTACTCGGTACCCAACCTCATTCTTCCCTTATATGCTTCCTTTGAGAACCCTCCATCATCCTTCCTTCGCAATTGCAAACAATTTCTCAGATCGAATATTGGTTGGTTGTCTATGGTTTGCATGCAAGCCCTTATGAATTTAGATAGTTTCTTCCCCCTCAGTGTCAATTTTGATGCCAATTCGATTGCTCTAATTTCGAAACTGCCAACAATCTTTCAGATTGAATATTGGTTGATTGTCTTTCGTTTGCATGCAGGCTCCTTAAAATGAATTAAGATAGTTTCTTCCCCATTAATTTCGATTTCAATGCCTCAGATTGGAGAGATTGCTCTAATGTCACTTTTTATTCCATCCAGTATTTTTTTTTCACTTCCAGGTCAAGTGTTCTAGTACCAATATTGATAGAGTAAATAGAACAGAAATATTTTCGAAATACTTGAAGAATATAGTTAAATATTTGAAAAGACCGCTTCAAAAACCTAAAGTCTAACAAAACAATTGTTTCCTACATCACCTCCCTAATATACCCTTATATCTTAATATCCTTAATAATATTTCCAACACCAGCCCTAAAGGTTATTCCTAAAACCATCCTCCTGAATAACTCTTTTTGGATAAATTTTTTTAGATTGCTTCCCTATCAATTAGCCCTACTACTTCTTTCTCTCCGATTTTCCGCTTCAAGCACATATTCCCCTCATACAAAAAATTTCCTCGTTCTCCTCTCCCTTCTAACTAGTCCCCTTTACTCACTCCCTGAAATAACCATGAACCCTTCTAACTAGTCTCCTTTGTGCATGCAATACTTCATGATGCCTCTTGCTCGCATAAGGCTCGTTACGGCCTATCACATTGCTATGATTGAAATCATAAACACCTTGTATAATCAAATTACTCAAAAGTTTCCTTGGGCACCAAGTTGACAAAAATGAGGTAGATAGGGTCCTCTCAGATAGCCAAATTATGTCACTACCAAAAGGAAAACATTGGGACATTGCAATTTCTGGACATTTCTCTTCATCATTTAAGCATTACGTTCAAAACTTAATGAGATGTAATTGGAATAAAAATGCAAAATGAACAAGTCATCTCAATAGTAAAAAAAACATGCAACCTCACAAAAGGTAAGGGAACAAATTTTTGAGGTGCAGTAAAATGCTTACTTTTTCTGGCGTTCCCGTTTCTTTAAACGTCGATTTGAATTCTCCGACAAGTCTTCAAAACGAAGGTCAGTAACCTGCTTTTTCTTTCGTTTTTTCTTTTTCTTCTCACTGGACTTGCTTTGGACGTCATCATCACTCCCCGTAAGCTGAGGCACTTGTGAATTTCCACCATGACCTTTGCTCTTTAAGTCAGATTTTCCCGGAGCTTCTTTTGGATGGTATTTCTGTATAGAAAGTGGAAGTCAAACTACAACTGAGTAACACAAACTATAAGCATGTAATGCCGTTATCAAGCTCTTCAAGCAGGCAAACTTAA

mRNA sequence

ATGTTGCGCGTGGCCAGTTGTCTGGTAGAGCGTGGTCGAGAGAGTGGTTCCGTTGGAGATCTTGTGGAGTTTGGCAGGATCGTAGTAGTCCAGGACAATGTGGAGACTGAGGAAGTTTTTGATGACGGAGAGAGGATGTTTGGCCACAACGGAGGAGAGAGCGCCATTGGAGACAACGAGGATGGTGATAGTCTGCCGGCTGTTAATCTCGTCGGCGAGTCTGGTCTGCTGCAGGTAGTTGCTGTAATCGCTATACTCCGGGAAATCCTTAAGAATGTCGGTAATATTGTGGGCGGAGACGGCGGTGGCTGCGGCGAGGGCGAGGAAGAAGAAAAGGGATTTGGAGGCCGCCATGGGAGAAGGGAGAGGAGAAACAGACGGAGGAGGAGTAGGAAAGAACGGGGGTTTAAGGGAGTGGAGAGGAAAGTGGAAGTCAAACTACAACTGAGTAACACAAACTATAAGCATGTAATGCCGTTATCAAGCTCTTCAAGCAGGCAAACTTAA

Coding sequence (CDS)

ATGTTGCGCGTGGCCAGTTGTCTGGTAGAGCGTGGTCGAGAGAGTGGTTCCGTTGGAGATCTTGTGGAGTTTGGCAGGATCGTAGTAGTCCAGGACAATGTGGAGACTGAGGAAGTTTTTGATGACGGAGAGAGGATGTTTGGCCACAACGGAGGAGAGAGCGCCATTGGAGACAACGAGGATGGTGATAGTCTGCCGGCTGTTAATCTCGTCGGCGAGTCTGGTCTGCTGCAGGTAGTTGCTGTAATCGCTATACTCCGGGAAATCCTTAAGAATGTCGGTAATATTGTGGGCGGAGACGGCGGTGGCTGCGGCGAGGGCGAGGAAGAAGAAAAGGGATTTGGAGGCCGCCATGGGAGAAGGGAGAGGAGAAACAGACGGAGGAGGAGTAGGAAAGAACGGGGGTTTAAGGGAGTGGAGAGGAAAGTGGAAGTCAAACTACAACTGAGTAACACAAACTATAAGCATGTAATGCCGTTATCAAGCTCTTCAAGCAGGCAAACTTAA

Protein sequence

MLRVASCLVERGRESGSVGDLVEFGRIVVVQDNVETEEVFDDGERMFGHNGGESAIGDNEDGDSLPAVNLVGESGLLQVVAVIAILREILKNVGNIVGGDGGGCGEGEEEEKGFGGRHGRRERRNRRRRSRKERGFKGVERKVEVKLQLSNTNYKHVMPLSSSSSRQT
Homology
[Close]
BLAST of Cp4.1LG12g00310 vs. TrEMBL
Match: A0A059C3M7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01366 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.4e-16
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1 

Query: 8   LVERGRESGSVGDLVEFGRIVVVQDNVETEEVFDDGERMFGHNGGESAIGDNEDGDSLPA 67
           LV+ G E G++GDLVE   + VV+D+V+ E V DDGE +    GG  A+ + EDGD L A
Sbjct: 298 LVQGGGEGGALGDLVELLGVEVVEDDVDGELVLDDGEGLLAGEGGHGAVVEGEDGDGLAA 357

Query: 68  VNLVGESGLLQVVAVIAILREILKNVGNIVGGDGGGCGEGEEEEKGFGG 117
           V+LVG+ GL +V A   +L E L++ G++V GDGGG  + EEEE G  G
Sbjct: 358 VDLVGQLGLAEVGAEEGVLGEALEDGGDVVAGDGGGGAQEEEEEGGGEG 406

[Close]
BLAST of Cp4.1LG12g00310 vs. TrEMBL
Match: A0A0A0KZJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G577370 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 58/128 (45.31%), Postives = 75/128 (58.59%), Query Frame = 1 

Query: 9   VERGRESGSVGDLVEFGRIVVVQDNVETEEVFDDGERMFGHNGGESAIGDNEDGDSLPAV 68
           +E   ESG VGDLVEF  IVVVQD+V+TEE+F +GERMF  +G ES IG+N+D DSL AV
Sbjct: 13  IEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAV 72

Query: 69  NLVGESGLLQVVAVIAILREILKNVGNIVGGDGGGCGEGEEEEKGFG--GRHGRRERRNR 128
            LVG+S +  VV      R++   + N          E EE + GFG  G+ G    R  
Sbjct: 73  YLVGKSAM--VVKARKRRRDLEATMEN---------REREERKDGFGRRGKSGEGSVREE 129

Query: 129 RRRSRKER 135
             R + E+
Sbjct: 133 ENRWKSEK 129

[Close]
BLAST of Cp4.1LG12g00310 vs. TrEMBL
Match: A0A0A0K4L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290465 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 14 ESGSVGDLVEFGRIVVVQDNVETEEVFDDGERMFGHNGGESAIGDNEDGDSL 66
          E  +VGDLVEF  IVVVQD++ETEE+FD+ ERMF  +G ES   +++DGDSL
Sbjct: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

[Close]
BLAST of Cp4.1LG12g00310 vs. NCBI nr
Match: gi|629107781|gb|KCW72927.1| (hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis])

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1 

Query: 8   LVERGRESGSVGDLVEFGRIVVVQDNVETEEVFDDGERMFGHNGGESAIGDNEDGDSLPA 67
           LV+ G E G++GDLVE   + VV+D+V+ E V DDGE +    GG  A+ + EDGD L A
Sbjct: 298 LVQGGGEGGALGDLVELLGVEVVEDDVDGELVLDDGEGLLAGEGGHGAVVEGEDGDGLAA 357

Query: 68  VNLVGESGLLQVVAVIAILREILKNVGNIVGGDGGGCGEGEEEEKGFGG 117
           V+LVG+ GL +V A   +L E L++ G++V GDGGG  + EEEE G  G
Sbjct: 358 VDLVGQLGLAEVGAEEGVLGEALEDGGDVVAGDGGGGAQEEEEEGGGEG 406

[Close]
BLAST of Cp4.1LG12g00310 vs. NCBI nr
Match: gi|700199740|gb|KGN54898.1| (hypothetical protein Csa_4G577370 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-10
Identity = 58/128 (45.31%), Postives = 75/128 (58.59%), Query Frame = 1 

Query: 9   VERGRESGSVGDLVEFGRIVVVQDNVETEEVFDDGERMFGHNGGESAIGDNEDGDSLPAV 68
           +E   ESG VGDLVEF  IVVVQD+V+TEE+F +GERMF  +G ES IG+N+D DSL AV
Sbjct: 13  IEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAV 72

Query: 69  NLVGESGLLQVVAVIAILREILKNVGNIVGGDGGGCGEGEEEEKGFG--GRHGRRERRNR 128
            LVG+S +  VV      R++   + N          E EE + GFG  G+ G    R  
Sbjct: 73  YLVGKSAM--VVKARKRRRDLEATMEN---------REREERKDGFGRRGKSGEGSVREE 129

Query: 129 RRRSRKER 135
             R + E+
Sbjct: 133 ENRWKSEK 129

[Close]
BLAST of Cp4.1LG12g00310 vs. NCBI nr
Match: gi|700189190|gb|KGN44423.1| (hypothetical protein Csa_7G290465 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 14 ESGSVGDLVEFGRIVVVQDNVETEEVFDDGERMFGHNGGESAIGDNEDGDSL 66
          E  +VGDLVEF  IVVVQD++ETEE+FD+ ERMF  +G ES   +++DGDSL
Sbjct: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g00310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g00310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059C3M7_EUCGR9.4e-1648.62Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01366 PE=4 SV=1[more]
A0A0A0KZJ2_CUCSA2.6e-1045.31Uncharacterized protein OS=Cucumis sativus GN=Csa_4G577370 PE=4 SV=1[more]
A0A0A0K4L9_CUCSA1.8e-0661.54Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290465 PE=4 SV=1[more]
BLAST of Cp4.1LG12g00310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g00310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|629107781|gb|KCW72927.1|1.3e-1548.62hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis][more]
gi|700199740|gb|KGN54898.1|3.8e-1045.31hypothetical protein Csa_4G577370 [Cucumis sativus][more]
gi|700189190|gb|KGN44423.1|2.6e-0661.54hypothetical protein Csa_7G290465 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g00310.1Cp4.1LG12g00310.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g00310Cp4.1LG17g02610Cucurbita pepo (Zucchini)cpecpeB174
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g00310Wild cucumber (PI 183967)cpecpiB136
Cp4.1LG12g00310Wild cucumber (PI 183967)cpecpiB145
Cp4.1LG12g00310Cucumber (Chinese Long) v2cpecuB135
Cp4.1LG12g00310Cucumber (Chinese Long) v2cpecuB143
Cp4.1LG12g00310Bottle gourd (USVL1VR-Ls)cpelsiB104
Cp4.1LG12g00310Bottle gourd (USVL1VR-Ls)cpelsiB122
Cp4.1LG12g00310Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g00310Watermelon (Charleston Gray)cpewcgB141
Cp4.1LG12g00310Watermelon (97103) v1cpewmB151
Cp4.1LG12g00310Watermelon (97103) v1cpewmB157
Cp4.1LG12g00310Melon (DHL92) v3.5.1cpemeB115
Cp4.1LG12g00310Melon (DHL92) v3.5.1cpemeB141
Cp4.1LG12g00310Cucumber (Gy14) v2cgybcpeB304
Cp4.1LG12g00310Cucumber (Gy14) v2cgybcpeB723
Cp4.1LG12g00310Melon (DHL92) v3.6.1cpemedB141
Cp4.1LG12g00310Silver-seed gourdcarcpeB0322
Cp4.1LG12g00310Silver-seed gourdcarcpeB0881
Cp4.1LG12g00310Silver-seed gourdcarcpeB1501
Cp4.1LG12g00310Cucumber (Chinese Long) v3cpecucB0153
Cp4.1LG12g00310Cucumber (Chinese Long) v3cpecucB0167
Cp4.1LG12g00310Wax gourdcpewgoB0178
Cp4.1LG12g00310Wax gourdcpewgoB0182
Cp4.1LG12g00310Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g00310Cucumber (Gy14) v1cgycpeB0670
Cp4.1LG12g00310Cucumber (Gy14) v1cgycpeB0947
Cp4.1LG12g00310Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g00310Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g00310Cucurbita maxima (Rimu)cmacpeB811
Cp4.1LG12g00310Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g00310Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g00310Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g00310Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g00310Cucurbita moschata (Rifu)cmocpeB833