Cp4.1LG11g11270 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g11270
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaA07g00030D protein
LocationCp4.1LG11 : 9321162 .. 9321446 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGTGGCTATTTTGGGGAGATGAATATGGGGAATAATAATATTGATAAGAGGAGAAGTGGGTCGCCGTCGTCGGCGGCGGCGGTGGCGACGGTGGTGAGGAGAGGGAGGAAGGGAGGCGGCGGCGGAGAGAAGCCGAAGCAGCCGCAGAGAGGGTTGGGAGTTGCTCAGTTGGAGAAGATCAGATTGCATGGCGAAATGGGTTGTGCGGCTTACGGCCACCTGTATCCAAATCTCTCCGCCGTAAATCTCTCCCTCTCTCTCTCTAAGAAGAGAAATTAA

mRNA sequence

ATGGGGAGTGGCTATTTTGGGGAGATGAATATGGGGAATAATAATATTGATAAGAGGAGAAGTGGGTCGCCGTCGTCGGCGGCGGCGGTGGCGACGGTGGTGAGGAGAGGGAGGAAGGGAGGCGGCGGCGGAGAGAAGCCGAAGCAGCCGCAGAGAGGGTTGGGAGTTGCTCAGTTGGAGAAGATCAGATTGCATGGCGAAATGGGTTGTGCGGCTTACGGCCACCTGTATCCAAATCTCTCCGCCGTAAATCTCTCCCTCTCTCTCTCTAAGAAGAGAAATTAA

Coding sequence (CDS)

ATGGGGAGTGGCTATTTTGGGGAGATGAATATGGGGAATAATAATATTGATAAGAGGAGAAGTGGGTCGCCGTCGTCGGCGGCGGCGGTGGCGACGGTGGTGAGGAGAGGGAGGAAGGGAGGCGGCGGCGGAGAGAAGCCGAAGCAGCCGCAGAGAGGGTTGGGAGTTGCTCAGTTGGAGAAGATCAGATTGCATGGCGAAATGGGTTGTGCGGCTTACGGCCACCTGTATCCAAATCTCTCCGCCGTAAATCTCTCCCTCTCTCTCTCTAAGAAGAGAAATTAA

Protein sequence

MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLEKIRLHGEMGCAAYGHLYPNLSAVNLSLSLSKKRN
Homology
[Close]
BLAST of Cp4.1LG11g11270 vs. Swiss-Prot
Match: SPER1_ARATH (Protein SPEAR1 OS=Arabidopsis thaliana GN=SPEAR1 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.6e-12
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGS +FG  N+  ++     S SP+S+++ +   RRG+K G   EKPKQPQRGLGVAQLE
Sbjct: 1  MGSTFFGRPNVVGSSPP---SSSPTSSSS-SPATRRGKKNGS--EKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGHLYPNL 81
          KIRLHGEM C ++    P+L
Sbjct: 61 KIRLHGEMSCNSFNSYNPSL 74

[Close]
BLAST of Cp4.1LG11g11270 vs. Swiss-Prot
Match: SPER3_ARATH (Protein SPEAR3 OS=Arabidopsis thaliana GN=SPEAR3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-10
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGS +FG   MG ++     S SP+S+++  +  +RG K   G +KPKQPQRGLGVAQLE
Sbjct: 1  MGSSFFGRPKMGGSS-----SSSPTSSSS--SPAKRG-KNKNGSDKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGHLYPN 80
          KIRLHGE  C ++ + YP+
Sbjct: 61 KIRLHGEYNCNSF-NTYPS 70

[Close]
BLAST of Cp4.1LG11g11270 vs. TrEMBL
Match: A0A0A0LFV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G003060 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 66/82 (80.49%), Postives = 68/82 (82.93%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGSGYFGEM    NNI+KRRSGSPS+A       RRGRK GGGGEKPKQPQRGLGVAQLE
Sbjct: 1  MGSGYFGEM----NNIEKRRSGSPSAAGG-----RRGRK-GGGGEKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGHLYPNLSA 83
          KIRLHGEMGCAAY H YPNLSA
Sbjct: 61 KIRLHGEMGCAAYSHFYPNLSA 72

[Close]
BLAST of Cp4.1LG11g11270 vs. TrEMBL
Match: W9S4R1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003654 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-15
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGSGYFGE N+GN++  +R SGS SS+++     R+G+K     EKP+QPQRGLGVAQLE
Sbjct: 1  MGSGYFGEPNLGNDH--QRGSGSSSSSSSS----RKGKKSNS--EKPRQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGH-------LYPNLSAVN 85
          KIRLHG+MGCAAYGH        YP  S  N
Sbjct: 61 KIRLHGQMGCAAYGHPSLHNPNTYPTTSNFN 83

[Close]
BLAST of Cp4.1LG11g11270 vs. TrEMBL
Match: M5VRX0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014716mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGS YFGE NMGN   D+R  G+    ++ ++  R+G+K     +KPKQPQRGLGVAQLE
Sbjct: 1  MGSSYFGEPNMGN---DQRGGGNGGGGSSSSSSSRKGKK--SNSDKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGHLY 78
          KIRLHG++GC  +  L+
Sbjct: 61 KIRLHGQLGCTYHPSLH 72

[Close]
BLAST of Cp4.1LG11g11270 vs. TrEMBL
Match: A0A087HE26_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G365700 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGS +FG+ NMG ++     S SP+S+++ +   RRG+K G   +KPKQPQRGLGVAQLE
Sbjct: 1  MGSSFFGKPNMGGSSPS---SSSPTSSSS-SPATRRGKKNGS--DKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYG-HLYP 79
          KIRLHGEM C +Y   LYP
Sbjct: 61 KIRLHGEMSCNSYNPSLYP 73

[Close]
BLAST of Cp4.1LG11g11270 vs. TrEMBL
Match: A0A0A0LW93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G207300 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGSGYFGE ++GNNN   R SGS SS++  +   RRG+KGG   ++P+QPQRGLGVAQLE
Sbjct: 1  MGSGYFGEPSLGNNN--DRGSGSSSSSSPSS---RRGKKGGSD-KQPRQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAY 74
          KIRLHGE+  A +
Sbjct: 61 KIRLHGEIASAGF 67

[Close]
BLAST of Cp4.1LG11g11270 vs. TAIR10
Match: AT2G20080.1 (AT2G20080.1 unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-13
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGS +FG  N+  ++     S SP+S+++ +   RRG+K G   EKPKQPQRGLGVAQLE
Sbjct: 1  MGSTFFGRPNVVGSSPP---SSSPTSSSS-SPATRRGKKNGS--EKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGHLYPNL 81
          KIRLHGEM C ++    P+L
Sbjct: 61 KIRLHGEMSCNSFNSYNPSL 74

[Close]
BLAST of Cp4.1LG11g11270 vs. TAIR10
Match: AT4G28840.1 (AT4G28840.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-11
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGS +FG   MG ++     S SP+S+++  +  +RG K   G +KPKQPQRGLGVAQLE
Sbjct: 1  MGSSFFGRPKMGGSS-----SSSPTSSSS--SPAKRG-KNKNGSDKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGHLYPN 80
          KIRLHGE  C ++ + YP+
Sbjct: 61 KIRLHGEYNCNSF-NTYPS 70

[Close]
BLAST of Cp4.1LG11g11270 vs. NCBI nr
Match: gi|778665877|ref|XP_011648648.1| (PREDICTED: uncharacterized protein LOC105434537 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 66/82 (80.49%), Postives = 68/82 (82.93%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGSGYFGEM    NNI+KRRSGSPS+A       RRGRK GGGGEKPKQPQRGLGVAQLE
Sbjct: 1  MGSGYFGEM----NNIEKRRSGSPSAAGG-----RRGRK-GGGGEKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGHLYPNLSA 83
          KIRLHGEMGCAAY H YPNLSA
Sbjct: 61 KIRLHGEMGCAAYSHFYPNLSA 72

[Close]
BLAST of Cp4.1LG11g11270 vs. NCBI nr
Match: gi|659071179|ref|XP_008458539.1| (PREDICTED: uncharacterized protein LOC103497912 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-24
Identity = 65/82 (79.27%), Postives = 68/82 (82.93%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGSGYFGEMN    NI+KRRSGSP++A       RRGRKGGGG EKPKQPQRGLGVAQLE
Sbjct: 1  MGSGYFGEMN----NIEKRRSGSPAAAGG-----RRGRKGGGG-EKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGHLYPNLSA 83
          KIRLHGEMGCAAY H YPNLSA
Sbjct: 61 KIRLHGEMGCAAYSHFYPNLSA 72

[Close]
BLAST of Cp4.1LG11g11270 vs. NCBI nr
Match: gi|703140951|ref|XP_010107378.1| (hypothetical protein L484_003654 [Morus notabilis])

HSP 1 Score: 89.0 bits (219), Expect = 4.9e-15
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGSGYFGE N+GN++  +R SGS SS+++     R+G+K     EKP+QPQRGLGVAQLE
Sbjct: 1  MGSGYFGEPNLGNDH--QRGSGSSSSSSSS----RKGKKSNS--EKPRQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGH-------LYPNLSAVN 85
          KIRLHG+MGCAAYGH        YP  S  N
Sbjct: 61 KIRLHGQMGCAAYGHPSLHNPNTYPTTSNFN 83

[Close]
BLAST of Cp4.1LG11g11270 vs. NCBI nr
Match: gi|659125567|ref|XP_008462751.1| (PREDICTED: uncharacterized protein LOC103501036 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 6.6e-12
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGSGYFGE ++GNNN  +R SGS SS++  ++  RRG+K GG  ++P+QPQRGLGVAQLE
Sbjct: 1  MGSGYFGEPSLGNNN--ERGSGSSSSSSPSSS--RRGKK-GGSDKQPRQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAY 74
          KIRLHGE+  A +
Sbjct: 61 KIRLHGEIASAGF 68

[Close]
BLAST of Cp4.1LG11g11270 vs. NCBI nr
Match: gi|645274913|ref|XP_008242564.1| (PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Prunus mume])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 1  MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60
          MGS YFGE NMGN   D+R  G+    ++ ++  R+G+K     +KPKQPQRGLGVAQLE
Sbjct: 1  MGSSYFGEPNMGN---DQRGGGNGGGGSSSSSSSRKGKK--SNSDKPKQPQRGLGVAQLE 60

Query: 61 KIRLHGEMGCAAYGHLY 78
          KIRLHG++GC  +  L+
Sbjct: 61 KIRLHGQLGCTYHPSLH 72

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g11270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SPER1_ARATH8.6e-1252.50Protein SPEAR1 OS=Arabidopsis thaliana GN=SPEAR1 PE=1 SV=1[more]
SPER3_ARATH2.8e-1050.63Protein SPEAR3 OS=Arabidopsis thaliana GN=SPEAR3 PE=1 SV=1[more]
BLAST of Cp4.1LG11g11270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFV0_CUCSA1.1e-2480.49Uncharacterized protein OS=Cucumis sativus GN=Csa_2G003060 PE=4 SV=1[more]
W9S4R1_9ROSA3.4e-1558.24Uncharacterized protein OS=Morus notabilis GN=L484_003654 PE=4 SV=1[more]
M5VRX0_PRUPE1.3e-1153.25Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014716mg PE=4 SV=1[more]
A0A087HE26_ARAAL1.8e-1156.96Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G365700 PE=4 SV=1[more]
A0A0A0LW93_CUCSA1.8e-1161.64Uncharacterized protein OS=Cucumis sativus GN=Csa_1G207300 PE=4 SV=1[more]
BLAST of Cp4.1LG11g11270 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20080.14.9e-1352.50 unknown protein[more]
AT4G28840.11.6e-1150.63 unknown protein[more]
BLAST of Cp4.1LG11g11270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665877|ref|XP_011648648.1|1.5e-2480.49PREDICTED: uncharacterized protein LOC105434537 [Cucumis sativus][more]
gi|659071179|ref|XP_008458539.1|4.4e-2479.27PREDICTED: uncharacterized protein LOC103497912 [Cucumis melo][more]
gi|703140951|ref|XP_010107378.1|4.9e-1558.24hypothetical protein L484_003654 [Morus notabilis][more]
gi|659125567|ref|XP_008462751.1|6.6e-1261.64PREDICTED: uncharacterized protein LOC103501036 [Cucumis melo][more]
gi|645274913|ref|XP_008242564.1|1.9e-1153.25PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Prun... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g11270.1Cp4.1LG11g11270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g11270CmaCh05G013490Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g11270CmoCh05G013580Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g11270MELO3C004570Melon (DHL92) v3.5.1cpemeB099
Cp4.1LG11g11270Lsi11G002480Bottle gourd (USVL1VR-Ls)cpelsiB074
Cp4.1LG11g11270CsaV3_2G002110Cucumber (Chinese Long) v3cpecucB0114
Cp4.1LG11g11270Carg10854Silver-seed gourdcarcpeB0809
Cp4.1LG11g11270Carg18584Silver-seed gourdcarcpeB1244
Cp4.1LG11g11270Carg09835Silver-seed gourdcarcpeB0181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g11270Melon (DHL92) v3.6.1cpemedB123
Cp4.1LG11g11270Silver-seed gourdcarcpeB0049
Cp4.1LG11g11270Wax gourdcpewgoB0128
Cp4.1LG11g11270Wax gourdcpewgoB0166
Cp4.1LG11g11270Cucurbita pepo (Zucchini)cpecpeB113
Cp4.1LG11g11270Cucurbita pepo (Zucchini)cpecpeB132
Cp4.1LG11g11270Cucurbita pepo (Zucchini)cpecpeB140
Cp4.1LG11g11270Cucumber (Gy14) v1cgycpeB0273
Cp4.1LG11g11270Cucurbita maxima (Rimu)cmacpeB075
Cp4.1LG11g11270Cucurbita maxima (Rimu)cmacpeB107
Cp4.1LG11g11270Cucurbita maxima (Rimu)cmacpeB171
Cp4.1LG11g11270Cucurbita moschata (Rifu)cmocpeB048
Cp4.1LG11g11270Cucurbita moschata (Rifu)cmocpeB084
Cp4.1LG11g11270Cucurbita moschata (Rifu)cmocpeB147
Cp4.1LG11g11270Wild cucumber (PI 183967)cpecpiB100
Cp4.1LG11g11270Cucumber (Chinese Long) v2cpecuB103
Cp4.1LG11g11270Watermelon (Charleston Gray)cpewcgB097
Cp4.1LG11g11270Watermelon (Charleston Gray)cpewcgB118
Cp4.1LG11g11270Watermelon (97103) v1cpewmB116
Cp4.1LG11g11270Watermelon (97103) v1cpewmB127
Cp4.1LG11g11270Cucumber (Gy14) v2cgybcpeB168