Cp4.1LG11g10840 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g10840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding family protein, putative
Location	Cp4.1LG11 : 9103792 .. 9107121 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAACGAGCAATTGTGGAGTCCAATCGTATTCTTCCCCACTTTCTTCATTTCCCTGAGATTGGATTTTCGCGGTGGTCATGACGGTGGACGACGATAGCTCGATATACGTCGGTGGCCTTCCTTATGACGCAACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGGTTAATTCCTCCACCAACCGTGTTCGCTGTTTCCATCTTCTTGTGTGACGATTATTCTTTTACGACTGTAGATAATGGCGTTGTTGCTTCTTGTATACTTCAGAATTATGAAGCTGTTTAGGTCTTTCTGATGGAATATTTAATTGTTTGGATATAAGTTTGTGAGTGGTTTTCTTGCCTTTCTTTTTTTTTTTTCAAGGCTTCTTCAAGTTCAGAGAGTAATTCAAACCAAAATTTCTGGCTTATGACGTTTTTTTAGGAGTTAAGACGTTGGTAGTAGGTTTCTTGGAGAATAAAGCATGCCTTCTAAAAATGTATCAACGGTTTATACCTGGTCTGAGTTGTGACATGGTGGAAAAAACTGGATTTGTGGTGAAGATTTTCAGTTGTTAGTTTACTTTTGTTTCAGTAAAATGCTTCCATGATTTGTGTCTGCTATGTATTTGCTAAAATGCTTCAGTTAGGCTTGTCGAACTTTTTATGTGTTTGAATGGCTTTGTTTAATGTGTTTTCCATTCAAAATGTAATTCTAGTTGGACACTTTGATCTTGTCATCAGATTATCAATGATCGTAGTACTAGAGGAAAGTGCTATGGGTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGGTATGTTAATTTATTGCTGGAAACGAATCTTTAGGTGTTGGTTGTTTATATATTTTTCATTATGTTTTTTAGTATTGGCTCCTAACATTGTAAGGCTTTGAATTAGACTATTGAAGGGCGAGTTGTCAGAGTTAATGGAGTGAATACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTCGATGTAGAGAGGGATGTGAATTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGAGCATGACAGATATCGTCGTAGAGGTAGAAATAATGACTGGTCTAGAGAGCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGCATATGAGCATTCACAAGATCGTGATCTACCAAAGGATATATTGTTAGATAGGAATCCTGAGTTGGAAAAAATTCCAAAGGCTAATGAGCAGGAACGTGATTTGAAGTTGAGCCATGGTCAAGATTGGGAAAAGGATCACGATGCAGATTGGAATGGAGGTGGAGGCATTGACAACACTGATGATTATGATAAAAGCCTTGGGAGTGATAGAGATCAACTCTCTAGGAGAGATAACGGGTGAGTCATCAAACTTATTGAAACCAATGTTAAGTTATCTTATATAAATTTCTTTTTGTCTTTGATGGAGGAAGTGGAGTAACTTTTTGGCCATGATTATATGATTGCTATTATGGCTTCTGTTTTCAGTCTTGCGATTGAAGGTCGAACTGCTCGGGAACTTTCATCTGATTCTAGTGATGATTATATCCATGAAGTATGCTTAACATTTTTCACCTTTTAGATTTTCTCCTTTAAAAGATTACAACTGACTAGTAAGCATCTAATGAAACTTTTGCACCTATTGTTTGCATTGTAGTTAAAGGAACAACTGGAGATATCAACAGAAAGATTTGAAGAACTTAGAAAAGAGGTCTGTTTCTATGTATATTGACCAAGAGGTCTGTTTCTATGGAAATGGTTGGCAAAATTTTCAGAGAAGTTATAATGTGGATTGACATAATTTAACGCTCTCAATCTCAGAATATATATGTATACATATAGGTCCCAAACAAATATAAGACCCATGCTCGCGGAGAAACTAAGCCAATGTATTATATTTAGCTGCAGTTCATACTTCCATTTGAATCTAATTACAGTTTTTGTGCAATGTTTTGTACTTGTTTTGGATCATTCTTGTAAATATCTTGATTGCACTTGAATTTAATGCCTTGGAAGTTTTCCTTTTCAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAGGGTAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGGTAAAAAGTTACTTTATAACTTGCAACCATGAGGCATTTGTTGTGTTCTCATTGTTATCCTGTCCTTCGAGCTTTATAACTGATATCCAGTTCATGCCCGACTGACTTGGATGCAGAAACTGGAAGATGCGTTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGCTGACCAAGGTAACTACCTGTTTAATATTTTACGTTGTCTAGAAACTATAACGGAAATGATGATTTTGGTTTCGTTGTGCAATTAACTGCAGCTCCATAAAAGCTTTCTTCTAGTGAAGGATTATTCTGAGAGACTTAAAATCAGTGAACAAGAACTTCAGGTTTGTGTTTCAACATTAAAACACCTTCATTCTCTTCTCTCGAAGGCAATAGAAAAAATGTGCTCATGGATGAAATTGTTGGACAGGATTTTATTAGAAAAATTGTACTATGTTTCAATATTTTGTAGGGAATCTCATATGCTATTATATGATATGAAGAGATTTATGTATATATATTTTATGTATATAGTTCTCAGAGATTTATCACATATTATACCTATGTAAGCATGCATAAACATTTCCTAAATCTCCCTTTTTGCTATTGCCTTACGTTTGACCGTCTCTGTATCCGATTACTCTTCTCCAAGGATGCTTGTAATTCATTCTTTTGACATTGCCCATGAATGAATAAAACACCATTACCATTTGCTTGCTTTACAGGCTCTAGTTGAATCAACTGCAATAGAAAGTGATGTTGGATGAAGTATGAAGTTCCAGCTAATTGCAGTTCCAGTCATAAGCTGAAAAGGATGCACTGGTCGGGGTAGTCGTCGTCTTCTGTTGATACTGATGACAAGTTGTGATGTAGAATTTGTTTGTAACTTAATTTCTCCCAAGATTAAGCTGTCCCTCTCTTTCATGGTACGTTCACAATCAACTATGAACATGTTTTTACTTGCCATTGGCATCTTCAGAGGTTCATTGCTTCACTGTTGTCAAGTTAGGTAGGTAAAGATATATGCTGAAAATTAATTCTAACTTCCAAATAGTGTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGAATGCAAATTTGAAGTTTAGGTTGTAATCCTTTTCTAAGAACATTATGACATATTTCAAACAGACTTCCGTATTGTTATATCATTAAATTTCTACC

mRNA sequence

ACAAACGAGCAATTGTGGAGTCCAATCGTATTCTTCCCCACTTTCTTCATTTCCCTGAGATTGGATTTTCGCGGTGGTCATGACGGTGGACGACGATAGCTCGATATACGTCGGTGGCCTTCCTTATGACGCAACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTAGTACTAGAGGAAAGTGCTATGGGTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGGCGAGTTGTCAGAGTTAATGGAGTGAATACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTCGATGTAGAGAGGGATGTGAATTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGAGCATGACAGATATCGTCGTAGAGGTAGAAATAATGACTGGTCTAGAGAGCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGCATATGAGCATTCACAAGATCGTGATCTACCAAAGGATATATTGTTAGATAGGAATCCTGAGTTGGAAAAAATTCCAAAGGCTAATGAGCAGGAACGTGATTTGAAGTTGAGCCATGGTCAAGATTGGGAAAAGGATCACGATGCAGATTGGAATGGAGGTGGAGGCATTGACAACACTGATGATTATGATAAAAGCCTTGGGAGTGATAGAGATCAACTCTCTAGGAGAGATAACGGTCTTGCGATTGAAGGTCGAACTGCTCGGGAACTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAGGGTAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCGTTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCCATAAAAGCTTTCTTCTAGTGAAGGATTATTCTGAGAGACTTAAAATCAGTGAACAAGAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAAAGTGATGTTGGATGAAGTATGAAGTTCCAGCTAATTGCAGTTCCAGTCATAAGCTGAAAAGGATGCACTGGTCGGGGTAGTCGTCGTCTTCTGTTGATACTGATGACAAGTTGTGATGTAGAATTTGTTTGTAACTTAATTTCTCCCAAGATTAAGCTGTCCCTCTCTTTCATGTGTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGAATGCAAATTTGAAGTTTAGGTTGTAATCCTTTTCTAAGAACATTATGACATATTTCAAACAGACTTCCGTATTGTTATATCATTAAATTTCTACC

Coding sequence (CDS)

ATGACGGTGGACGACGATAGCTCGATATACGTCGGTGGCCTTCCTTATGACGCAACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTAGTACTAGAGGAAAGTGCTATGGGTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGGCGAGTTGTCAGAGTTAATGGAGTGAATACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTCGATGTAGAGAGGGATGTGAATTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGAGCATGACAGATATCGTCGTAGAGGTAGAAATAATGACTGGTCTAGAGAGCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGCATATGAGCATTCACAAGATCGTGATCTACCAAAGGATATATTGTTAGATAGGAATCCTGAGTTGGAAAAAATTCCAAAGGCTAATGAGCAGGAACGTGATTTGAAGTTGAGCCATGGTCAAGATTGGGAAAAGGATCACGATGCAGATTGGAATGGAGGTGGAGGCATTGACAACACTGATGATTATGATAAAAGCCTTGGGAGTGATAGAGATCAACTCTCTAGGAGAGATAACGGTCTTGCGATTGAAGGTCGAACTGCTCGGGAACTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAGGGTAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCGTTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCCATAAAAGCTTTCTTCTAGTGAAGGATTATTCTGAGAGACTTAAAATCAGTGAACAAGAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAAAGTGATGTTGGATGA

Protein sequence

MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

Homology

[Close]

BLAST of Cp4.1LG11g10840 vs. Swiss-Prot
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.1e-15
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIK 66
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVRVNGVNTR-GGGRFG 92
            +DGR + GRVV+VN  N R  GG FG
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of Cp4.1LG11g10840 vs. Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.9e-14
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 5   DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDA 64
           D+  ++VGGL ++ TE+SL ++F  YG V  V ++ DR S R + +GFVTF NP  A DA
Sbjct: 4   DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63

Query: 65  IKDMDGRTIEGRVVRVNGV-----NTRGGGRFGRESNR 97
           +  M+G++++GR +RV+       + RGG R G    R
Sbjct: 64  MMAMNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGR 101

[Close]

BLAST of Cp4.1LG11g10840 vs. Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-13
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 1


Query: 3  VDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAI 62
          + D+  +++GGL +D  E+SL ++F  YG +  V ++ DR T R + +GFVTF NP  A 
Sbjct: 1  MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60

Query: 63 DAIKDMDGRTIEGRVVRVNGVNTRGGGRFG 92
          DA+  M+G+ ++GR +RV+      G R G
Sbjct: 61 DAMMAMNGKAVDGRQIRVDQAGKSSGDRRG 90

[Close]

BLAST of Cp4.1LG11g10840 vs. Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-12
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 10 YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMD 69
          +VGGL +   +  L R F  +G V+  KIINDR T R + +GFVTF + +S  DAI +M+
Sbjct: 9  FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68

Query: 70 GRTIEGRVVRVNGVNTRGGGRFG 92
          G+ ++GR + VN   +RGGG  G
Sbjct: 69 GKELDGRTITVNEAQSRGGGGGG 91

[Close]

BLAST of Cp4.1LG11g10840 vs. Swiss-Prot
Match: RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-12
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 10 YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMD 69
          +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70 GRTIEGRVVRVNGVNTRGGGRFG 92
          G+ ++GRV+ VN   +RG G  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGG 91

[Close]

BLAST of Cp4.1LG11g10840 vs. TrEMBL
Match: A0A0A0LIV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G005930 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 4.3e-156
Identity = 302/360 (83.89%), Postives = 318/360 (88.33%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLP+D  LDR PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDY--------------DKSLGSDRDQLSRRDNGL 240
           KL+H QDWEKDH AD +GG GID TDDY              DKSL +DRDQ+ RRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 241 AIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKK 300
            IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of Cp4.1LG11g10840 vs. TrEMBL
Match: I1K1C5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G011400 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 4.7e-86
Identity = 192/349 (55.01%), Postives = 252/349 (72.21%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATE+++R +F+LYGA++ VKIIND  TRGKCY FVTFTNPRSA
Sbjct: 1   MTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDPRTRGKCYCFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGG-GRFGRESNRF-DVERDVNWERDRDRGRDYEHD 120
           IDAI DM+GRTI+GRVV+VNGV TRGG   FGRE   + + ER+ +W+R RDR RDY+HD
Sbjct: 61  IDAINDMNGRTIDGRVVKVNGVRTRGGRSNFGRERYYYHNDERNGDWDRSRDRDRDYDHD 120

Query: 121 RYRR---RGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANE 180
              R   R R++DW R+RDRSR+ D D++R +EH  D D  ++ +L+ +   E     NE
Sbjct: 121 SNDRDGYRNRSSDWGRDRDRSRDRDQDRDRRFEHMHDYDQAREAMLENDWIREDDRVENE 180

Query: 181 QERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARE 240
           QE      HG D ++DH+ D N    +D T D D+S G DR   SRR+N L +  +   +
Sbjct: 181 QEH--SRGHGGDVDRDHNIDLNVDRKMDRTSDPDRSFGEDRKDQSRRNNDLNVTNQHIMD 240

Query: 241 LSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALI 300
           LSSDS+  +  +L+ QLE ST++ ++L+KE+SQ+EE   EK   V ELQK++KKLEDA+I
Sbjct: 241 LSSDSAGTHNEQLEAQLERSTQQLDQLKKEVSQMEEGLEEKRLHVKELQKQSKKLEDAVI 300

Query: 301 SAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESD 345
           +AKK SS+RQMQL KLHK FL VKD +E+LK SE+ELQAL+++   E D
Sbjct: 301 NAKKNSSYRQMQLMKLHKGFLQVKDCTEKLKTSEKELQALIDTAMSEID 347

[Close]

BLAST of Cp4.1LG11g10840 vs. TrEMBL
Match: A0A0B2R6F8_GLYSO (Cold-inducible RNA-binding protein B OS=Glycine soja GN=glysoja_022101 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 4.7e-86
Identity = 192/349 (55.01%), Postives = 252/349 (72.21%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYDATE+++R +F+LYGA++ VKIIND  TRGKCY FVTFTNPRSA
Sbjct: 1   MTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDPRTRGKCYCFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGG-GRFGRESNRF-DVERDVNWERDRDRGRDYEHD 120
           IDAI DM+GRTI+GRVV+VNGV TRGG   FGRE   + + ER+ +W+R RDR RDY+HD
Sbjct: 61  IDAINDMNGRTIDGRVVKVNGVRTRGGRSNFGRERYYYHNDERNGDWDRSRDRDRDYDHD 120

Query: 121 RYRR---RGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANE 180
              R   R R++DW R+RDRSR+ D D++R +EH  D D  ++ +L+ +   E     NE
Sbjct: 121 SNDRDGYRNRSSDWGRDRDRSRDRDQDRDRRFEHMHDYDQAREAMLENDWIREDDRVENE 180

Query: 181 QERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARE 240
           QE      HG D ++DH+ D N    +D T D D+S G DR   SRR+N L +  +   +
Sbjct: 181 QEH--SRGHGGDVDRDHNIDLNVDRKMDRTSDPDRSFGEDRKDQSRRNNDLNVTNQHIMD 240

Query: 241 LSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALI 300
           LSSDS+  +  +L+ QLE ST++ ++L+KE+SQ+EE   EK   V ELQK++KKLEDA+I
Sbjct: 241 LSSDSAGTHNEQLEAQLERSTQQLDQLKKEVSQMEEGLEEKRLHVKELQKQSKKLEDAVI 300

Query: 301 SAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESD 345
           +AKK SS+RQMQL KLHK FL VKD +E+LK SE+ELQAL+++   E D
Sbjct: 301 NAKKNSSYRQMQLMKLHKGFLQVKDCTEKLKTSEKELQALIDTAMSEID 347

[Close]

BLAST of Cp4.1LG11g10840 vs. TrEMBL
Match: D7TBV2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04610 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 8.0e-86
Identity = 193/346 (55.78%), Postives = 255/346 (73.70%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DDD+SIYVGGLPY+ATEDS+R++F+LYGA+VAVKIIN+R   GKCYGFVTFTNPRSA
Sbjct: 1   MTIDDDNSIYVGGLPYNATEDSIRKVFNLYGAIVAVKIINERGVGGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGG-GRFGRESNRFDVERDVNWERDRDRGRDYEHDR 120
           IDAI DM+GR I+GR+V VN V TRGG   FGRES R + ER ++W+R RDR RDY HD+
Sbjct: 61  IDAINDMNGRDIDGRIVVVNEVRTRGGRSNFGRESFRRNSERGMDWDRGRDRERDYGHDK 120

Query: 121 YRRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERD 180
              R RN D      RSR+HD ++ER +E ++D D  +D  +DRN + ++  + NEQE  
Sbjct: 121 DHFRDRNID------RSRDHDRERERGHERARDHDRTRDRFMDRNRDQDRDMEDNEQEHS 180

Query: 181 LKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSD 240
              +H QDWE+DHD DW+    ++NT+D+DKS   D+D+ S++ NG    G  +R LSSD
Sbjct: 181 R--NHDQDWERDHDIDWDRDREMNNTNDHDKS--GDKDEHSKKRNG----GWHSRGLSSD 240

Query: 241 SSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKK 300
           S  DY H+  E+++ S +R EEL+KEISQ+EER  EK +LV++LQKK+ KLE AL +AKK
Sbjct: 241 SDGDY-HDQVEEVDRSIQRREELQKEISQMEERLEEKQQLVLDLQKKSLKLEGALTAAKK 300

Query: 301 RSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDV 346
            SS RQ+QLTKLH+ FL VK+ +ERLK  EQELQ ++ +  +E D+
Sbjct: 301 LSSQRQLQLTKLHRCFLQVKENTERLKSCEQELQTVLGAAMMEIDI 331

[Close]

BLAST of Cp4.1LG11g10840 vs. TrEMBL
Match: A0A0S3R722_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G440700 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 4.4e-84
Identity = 189/349 (54.15%), Postives = 251/349 (71.92%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DDDSSIYVGGLPYD T++++R +F+LYGA++ VKIIND+  RGKCY FVTFTNPRSA
Sbjct: 1   MTMDDDSSIYVGGLPYDITDETIRTVFNLYGAILDVKIINDQRGRGKCYCFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGG-GRFGRESNRF-DVERDVNWERDRDRGRDYEHD 120
           IDAI DM+GRTI+GRVV+VNGV +RGG   FGRE   + + ER+ +W+R RDR RDY+HD
Sbjct: 61  IDAINDMNGRTIDGRVVKVNGVRSRGGRSNFGRERYYYHNDERNGDWDRGRDRDRDYDHD 120

Query: 121 RYRR---RGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANE 180
              R   R R+NDWSR+RDRSR+ D D++R +EH  D D  +D +LD +   E     NE
Sbjct: 121 NSGRDGYRNRSNDWSRDRDRSRDRDQDRDRRFEHIHDYDEDRDPMLDNDWGREDDRVENE 180

Query: 181 QERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARE 240
           QE       G D ++DH+ D+N     D T D D+S   DR   SRR+N L +  + + +
Sbjct: 181 QEH--SRGDGGDVDRDHNLDFNADRKTDRTSDLDRSFDEDRKDQSRRNNDLNVTNQHSMD 240

Query: 241 LSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALI 300
           LSS+S+     +++ QLE ST++ ++L+KE+S +EE   EK   V ELQK++KKLEDALI
Sbjct: 241 LSSESTGADDDQVEAQLESSTKQLDQLKKEVSLMEEGLEEKRVHVKELQKQSKKLEDALI 300

Query: 301 SAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESD 345
           +AKK +S+RQMQL KLHK FL VKDY+ERLK SE+ELQAL+++  +E D
Sbjct: 301 NAKKNTSYRQMQLIKLHKCFLQVKDYTERLKSSEKELQALIDTVLLEID 347

[Close]

BLAST of Cp4.1LG11g10840 vs. TAIR10
Match: AT5G19960.1 (AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-58
Identity = 160/350 (45.71%), Postives = 216/350 (61.71%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRD--YEHD 120
            DAI+DMDG++I GR VRVN V TR GGR      R  ++    W+R  DR  D  YE D
Sbjct: 61  DDAIEDMDGKSIGGRAVRVNDVTTR-GGRMNPGPGR--LQPHGGWDRSPDRRSDGNYERD 120

Query: 121 RYRRRGRNNDWSRERDRSREHD-LDKERAYEHSQDRDLPKD-ILLDRNPELEKIPKANEQ 180
           RY  R R  D  R +DR ++H  ++KERAYEHS D +   D  ++DRN   E++   +E 
Sbjct: 121 RYSDRSRERD--RSQDRRKDHRYIEKERAYEHSHDFERRNDHDMVDRNGYKERVFDGDE- 180

Query: 181 ERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTAREL 240
                     DW  D     N G GI+ T  ++      R Q ++R++   ++G   R+ 
Sbjct: 181 ---------GDWRGDRSYVDN-GRGINGTSAHE-----GRSQETKREDSTILDGGRGRDH 240

Query: 241 SSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALIS 300
            S+SS D  H++KE LE   +  E LR E+  +EER   K  +  ELQKK+K+LED LI+
Sbjct: 241 FSNSSGD--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLIN 300

Query: 301 AKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
            KK  S R+ +L KLHKS+  V++ ++ LK  EQELQ LV S A E   G
Sbjct: 301 EKKLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREGVAG 327

[Close]

BLAST of Cp4.1LG11g10840 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-16
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIK 66
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVRVNGVNTR-GGGRFG 92
            +DGR + GRVV+VN  N R  GG FG
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of Cp4.1LG11g10840 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-13
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 10 YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMD 69
          +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70 GRTIEGRVVRVNGVNTRGGGRFG 92
          G+ ++GRV+ VN   +RG G  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGG 91

[Close]

BLAST of Cp4.1LG11g10840 vs. TAIR10
Match: AT1G60650.1 (AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-13
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 1


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVNTRGGGR---------------FGRESNRFDVERDVNWERDR 125
           K M GR +  +V+ VN    + GG                 G E   F   R  +W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERAYEHSQDR 154
               D + +R+R     R R  D    RDR  + DL++ER  E   DR
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDR 177

[Close]

BLAST of Cp4.1LG11g10840 vs. TAIR10
Match: AT2G21660.1 (AT2G21660.1 cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-11
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1


Query: 4  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAID 63
          D +   +VGGL +   + +L   F  YG V+  KIINDR T R + +GFVTF + ++  D
Sbjct: 5  DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64 AIKDMDGRTIEGRVVRVNGVNTRGGGRFG 92
          AI+ M+G+ ++GR + VN   +RG G  G
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSRGSGGGG 93

[Close]

BLAST of Cp4.1LG11g10840 vs. NCBI nr
Match: gi|659071062|ref|XP_008457973.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo])

HSP 1 Score: 571.2 bits (1471), Expect = 1.2e-159
Identity = 303/346 (87.57%), Postives = 319/346 (92.20%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDVNWERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KL+H QDWEKDH AD +GGGGID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Cp4.1LG11g10840 vs. NCBI nr
Match: gi|778666007|ref|XP_011648671.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X2 [Cucumis sativus])

HSP 1 Score: 568.5 bits (1464), Expect = 7.8e-159
Identity = 302/346 (87.28%), Postives = 318/346 (91.91%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLP+D  LDR PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KL+H QDWEKDH AD +GG GID TDDYDKSL +DRDQ+ RRDNGL IEGRTAR+LSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Cp4.1LG11g10840 vs. NCBI nr
Match: gi|778666010|ref|XP_011648672.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X3 [Cucumis sativus])

HSP 1 Score: 566.2 bits (1458), Expect = 3.8e-158
Identity = 301/346 (86.99%), Postives = 317/346 (91.62%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLP+D  LDR PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KL+H QDWEKDH AD +GG GID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Cp4.1LG11g10840 vs. NCBI nr
Match: gi|778666003|ref|XP_004139331.2| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Cucumis sativus])

HSP 1 Score: 558.9 bits (1439), Expect = 6.1e-156
Identity = 302/360 (83.89%), Postives = 318/360 (88.33%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLP+D  LDR PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDY--------------DKSLGSDRDQLSRRDNGL 240
           KL+H QDWEKDH AD +GG GID TDDY              DKSL +DRDQ+ RRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 241 AIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKK 300
            IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of Cp4.1LG11g10840 vs. NCBI nr
Match: gi|1009160092|ref|XP_015898165.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Ziziphus jujuba])

HSP 1 Score: 334.0 bits (855), Expect = 3.2e-88
Identity = 200/346 (57.80%), Postives = 257/346 (74.28%), Query Frame = 1


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DD+SSIYVGGLPYDATEDS+RR+FDLYGAVVAVKIIND  TRGKCYGFVT+TNPRSA
Sbjct: 1   MTIDDESSIYVGGLPYDATEDSVRRVFDLYGAVVAVKIINDYGTRGKCYGFVTYTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGG-GRFGRESNRFDVERDVNWERDRDRGRDYEHDR 120
           IDAI DMDGRTI+GRVV+VN V TRGG  RFGRES R+++ERD    R RD+ R+Y+HDR
Sbjct: 61  IDAINDMDGRTIDGRVVKVNEVKTRGGRSRFGRESFRWNIERD----RGRDQEREYDHDR 120

Query: 121 YRRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERD 180
            R R ++ D SRERDRS   D +KER YE++ D D  +   LD+  + ++  + NEQ  D
Sbjct: 121 ERYRNQS-DRSRERDRSHNRDQEKEREYEYAYDHDQARSHFLDKGRDQDRNLEDNEQ--D 180

Query: 181 LKLSHGQDWEKDHDADWNGGGG--IDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELS 240
              +H + WE++H+ ++N      +D T+ +D  +   R+Q SR+ NG  I  R + E  
Sbjct: 181 HSRNHDRRWEREHNLEFNPDKDREMDGTNGHDNIVPMYRNQQSRKWNGNNIIDRHSGEFL 240

Query: 241 SDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISA 300
           S+ SDDY  ++K QLE ST+RFEEL+KEIS +E R  EKG+ V++LQ K+ KLEDAL++A
Sbjct: 241 SNLSDDYDDDVKAQLERSTQRFEELKKEISLVEARLEEKGRHVLDLQNKSNKLEDALVNA 300

Query: 301 KKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIES 344
           KK SS+ +MQLTKLHK FL VKDYSE+LK  E+ELQ+LV+S   E+
Sbjct: 301 KKNSSYHRMQLTKLHKYFLQVKDYSEKLKSCEKELQSLVDSAMAEN 339

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g10840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBG3_ARATH	8.1e-15	49.43	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
CIRBP_XENTR	8.9e-14	40.82	Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1	[more]
CIRBB_XENLA	2.6e-13	38.89	Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1	[more]
GRP10_BRANA	2.9e-12	44.58	Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1	[more]
RBG8_ARATH	2.9e-12	43.37	Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8 PE=1 SV=1	[more]

BLAST of Cp4.1LG11g10840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIV9_CUCSA	4.3e-156	83.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G005930 PE=4 SV=1	[more]
I1K1C5_SOYBN	4.7e-86	55.01	Uncharacterized protein OS=Glycine max GN=GLYMA_05G011400 PE=4 SV=1	[more]
A0A0B2R6F8_GLYSO	4.7e-86	55.01	Cold-inducible RNA-binding protein B OS=Glycine soja GN=glysoja_022101 PE=4 SV=1	[more]
D7TBV2_VITVI	8.0e-86	55.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04610 PE=4 SV=...	[more]
A0A0S3R722_PHAAN	4.4e-84	54.15	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G440700 PE=...	[more]

BLAST of Cp4.1LG11g10840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19960.1	2.2e-58	45.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	4.6e-16	49.43	glycine-rich RNA-binding protein 3	[more]
AT4G39260.1	1.6e-13	43.37	cold, circadian rhythm, and RNA binding 1	[more]
AT1G60650.1	3.6e-13	35.71	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc...	[more]
AT2G21660.1	1.5e-11	40.45	cold, circadian rhythm, and rna binding 2	[more]

BLAST of Cp4.1LG11g10840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071062\|ref\|XP_008457973.1\|	1.2e-159	87.57	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo]	[more]
gi\|778666007\|ref\|XP_011648671.1\|	7.8e-159	87.28	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X2 [Cucumis sativus...	[more]
gi\|778666010\|ref\|XP_011648672.1\|	3.8e-158	86.99	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X3 [Cucumis sativus...	[more]
gi\|778666003\|ref\|XP_004139331.2\|	6.1e-156	83.89	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Cucumis sativus...	[more]
gi\|1009160092\|ref\|XP_015898165.1\|	3.2e-88	57.80	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g10840.1	Cp4.1LG11g10840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 score: 3.6
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..80 score: 1.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 7..84 score: 19
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 4..89 score: 1.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 4..94 score: 1.16
None	No IPR available	unknown	Coil	Coil	coord: 245..272 score: -coord: 318..338 score: -coord: 280..300 scor
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 1..79 score: 6.6E-34coord: 186..193 score: 6.6E-34coord: 240..271 score: 6.6E-34coord: 102..145 score: 6.6
None	No IPR available	PANTHER	PTHR24012:SF416	SUBFAMILY NOT NAMED	coord: 186..193 score: 6.6E-34coord: 240..271 score: 6.6E-34coord: 1..79 score: 6.6E-34coord: 102..145 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g10840	Cucsa.116130	Cucumber (Gy14) v1	cgycpeB0273
Cp4.1LG11g10840	CmaCh05G013180	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g10840	CmoCh05G013310	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g10840	Cla016742	Watermelon (97103) v1	cpewmB116
Cp4.1LG11g10840	Csa2G005930	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g10840	MELO3C004534	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g10840	ClCG11G002710	Watermelon (Charleston Gray)	cpewcgB097
Cp4.1LG11g10840	CSPI02G01430	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g10840	Lsi11G002880	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g10840	MELO3C004534.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g10840	CsaV3_2G002560	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g10840	Bhi06G001655	Wax gourd	cpewgoB0125
Cp4.1LG11g10840	CsGy2G001450	Cucumber (Gy14) v2	cgybcpeB168
Cp4.1LG11g10840	Carg10882	Silver-seed gourd	carcpeB0809

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g10840	Silver-seed gourd	carcpeB0049
Cp4.1LG11g10840	Silver-seed gourd	carcpeB0181
Cp4.1LG11g10840	Silver-seed gourd	carcpeB1354
Cp4.1LG11g10840	Cucumber (Chinese Long) v3	cpecucB0119
Cp4.1LG11g10840	Wax gourd	cpewgoB0166
Cp4.1LG11g10840	Cucurbita pepo (Zucchini)	cpecpeB113
Cp4.1LG11g10840	Cucurbita pepo (Zucchini)	cpecpeB132
Cp4.1LG11g10840	Cucurbita pepo (Zucchini)	cpecpeB140
Cp4.1LG11g10840	Cucurbita maxima (Rimu)	cmacpeB074
Cp4.1LG11g10840	Cucurbita maxima (Rimu)	cmacpeB107
Cp4.1LG11g10840	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g10840	Cucurbita moschata (Rifu)	cmocpeB048
Cp4.1LG11g10840	Cucurbita moschata (Rifu)	cmocpeB084
Cp4.1LG11g10840	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g10840	Cucumber (Chinese Long) v2	cpecuB125
Cp4.1LG11g10840	Bottle gourd (USVL1VR-Ls)	cpelsiB096
Cp4.1LG11g10840	Watermelon (Charleston Gray)	cpewcgB090
Cp4.1LG11g10840	Watermelon (Charleston Gray)	cpewcgB120
Cp4.1LG11g10840	Watermelon (97103) v1	cpewmB098
Cp4.1LG11g10840	Watermelon (97103) v1	cpewmB128
Cp4.1LG11g10840	Melon (DHL92) v3.5.1	cpemeB082
Cp4.1LG11g10840	Cucumber (Gy14) v2	cgybcpeB174
Cp4.1LG11g10840	Melon (DHL92) v3.6.1	cpemedB114