Cp4.1LG11g10020 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g10020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionS-RNase
LocationCp4.1LG11 : 8454388 .. 8455266 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACCTCTCAACTCCCTCCCCTTCTCCTTCTCCTTCTCCATTTCCTTCAACCTCATGGGAAATTTCGTAGTTACGTTTTTCCTCTTTTATTTAGCTTTTTCATCTGTACAAGCTAAATTCCAAGAGGTCGAGCGACCTAAACCTAAACCTAAGTATCAATATGAATACTTTCAAATGGTACAGCAATGGCCGCAGTCCATTTGTAATAGTGAGCATTGTATAGGTAAGCCTAAAGCTATGTTCACCATTCATGGGCTCTGGCCTCAAAATTACTCTACTTCACTTATTTGCGACGGGTCTCCGTTCGCCGACGAATATGTAAGTTTTTTTTTAATAATAATAATATTATTATTATTACCGTCTAGGTATAGATGAGTATTTGATGCTTTTTATATATATATTTTTTCTTTACTCAGATCAAATCAATTAGAGAGCAGCTAAATCTATATTGGCCAACCCTATTGTTTAAAGATAACAAATCATTTTGGAATCATGAATGGATGATTCACGGTGAGTGTTCAGACCCACCCTTTAACCCATTTCAGTATTTTCAGAAAACTCTGAAAATCCGAAAAACCTACGATTTATTAGCCATCCTCAATGCTGCGGGACTTGGACCAACTACTGCTGCCCTTCGTAACCGTGATGACATAGAAAAAGCAATTGGAGCTGCAATAGGACAAAAGCCAGTTCTAAAATGCAACACTAACACCAGGACAAGAGACCGCCAACTATCGGAAGTTGTTTTATGCCTTGATGAAGATGGTGTGAAGTTAATTGATTGTGCTAAATTTGTTAGCACCAATTGCCCTCTTACTTTTTCATGGCCCCCTTTTGTTGCTAGTGAGTAACTGGTTCAGAAGTCATCCGCTCCCAAAT

mRNA sequence

TTACCTCTCAACTCCCTCCCCTTCTCCTTCTCCTTCTCCATTTCCTTCAACCTCATGGGAAATTTCGTAGTTACGTTTTTCCTCTTTTATTTAGCTTTTTCATCTGTACAAGCTAAATTCCAAGAGGTCGAGCGACCTAAACCTAAACCTAAGTATCAATATGAATACTTTCAAATGGTACAGCAATGGCCGCAGTCCATTTGTAATAGTGAGCATTGTATAGGTAAGCCTAAAGCTATGTTCACCATTCATGGGCTCTGGCCTCAAAATTACTCTACTTCACTTATTTGCGACGGGTCTCCGTTCGCCGACGAATATATCAAATCAATTAGAGAGCAGCTAAATCTATATTGGCCAACCCTATTGTTTAAAGATAACAAATCATTTTGGAATCATGAATGGATGATTCACGGTGAGTGTTCAGACCCACCCTTTAACCCATTTCAGTATTTTCAGAAAACTCTGAAAATCCGAAAAACCTACGATTTATTAGCCATCCTCAATGCTGCGGGACTTGGACCAACTACTGCTGCCCTTCGTAACCGTGATGACATAGAAAAAGCAATTGGAGCTGCAATAGGACAAAAGCCAGTTCTAAAATGCAACACTAACACCAGGACAAGAGACCGCCAACTATCGGAAGTTGTTTTATGCCTTGATGAAGATGGTGTGAAGTTAATTGATTGTGCTAAATTTGTTAGCACCAATTGCCCTCTTACTTTTTCATGGCCCCCTTTTGTTGCTAGTGAGTAACTGGTTCAGAAGTCATCCGCTCCCAAAT

Coding sequence (CDS)

ATGGGAAATTTCGTAGTTACGTTTTTCCTCTTTTATTTAGCTTTTTCATCTGTACAAGCTAAATTCCAAGAGGTCGAGCGACCTAAACCTAAACCTAAGTATCAATATGAATACTTTCAAATGGTACAGCAATGGCCGCAGTCCATTTGTAATAGTGAGCATTGTATAGGTAAGCCTAAAGCTATGTTCACCATTCATGGGCTCTGGCCTCAAAATTACTCTACTTCACTTATTTGCGACGGGTCTCCGTTCGCCGACGAATATATCAAATCAATTAGAGAGCAGCTAAATCTATATTGGCCAACCCTATTGTTTAAAGATAACAAATCATTTTGGAATCATGAATGGATGATTCACGGTGAGTGTTCAGACCCACCCTTTAACCCATTTCAGTATTTTCAGAAAACTCTGAAAATCCGAAAAACCTACGATTTATTAGCCATCCTCAATGCTGCGGGACTTGGACCAACTACTGCTGCCCTTCGTAACCGTGATGACATAGAAAAAGCAATTGGAGCTGCAATAGGACAAAAGCCAGTTCTAAAATGCAACACTAACACCAGGACAAGAGACCGCCAACTATCGGAAGTTGTTTTATGCCTTGATGAAGATGGTGTGAAGTTAATTGATTGTGCTAAATTTGTTAGCACCAATTGCCCTCTTACTTTTTCATGGCCCCCTTTTGTTGCTAGTGAGTAA

Protein sequence

MGNFVVTFFLFYLAFSSVQAKFQEVERPKPKPKYQYEYFQMVQQWPQSICNSEHCIGKPKAMFTIHGLWPQNYSTSLICDGSPFADEYIKSIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTYDLLAILNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKLIDCAKFVSTNCPLTFSWPPFVASE
Homology
[Close]
BLAST of Cp4.1LG11g10020 vs. Swiss-Prot
Match: RNMC_MOMCH (Ribonuclease MC OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-34
Identity = 73/183 (39.89%), Postives = 102/183 (55.74%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICN---SEHCIGKPKAMFTIHGLWPQNYSTSLI-C-DGSPFADEYIK 95
           ++ F  VQQWP ++C+   S  C G     FTIHGLWPQ   TSL  C  GSPF    I 
Sbjct: 1   FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKIS 60

Query: 96  SIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTYDLLAILN 155
            ++ QLN  WP +L  +N+ FW+HEW  HG CS+  FN   YF+  + +R  YD++  L 
Sbjct: 61  HLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALR 120

Query: 156 AAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKLID 214
               GP     ++R  I+  + A  G+ P L+C T+ +T+   L +VV C  +DG  LID
Sbjct: 121 PHAAGP-NGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLID 180

[Close]
BLAST of Cp4.1LG11g10020 vs. Swiss-Prot
Match: RNLE_SOLLC (Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 8.6e-29
Identity = 71/204 (34.80%), Postives = 106/204 (51.96%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICNSEHCI-----GKPKAMFTIHGLWPQNYSTSL--ICD-GSPFADE 95
           +++F  VQQWP S C+++        GKP A F IHGLWP N   +    CD  SP+   
Sbjct: 29  FDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNNNDGTYPSNCDPNSPYDQS 88

Query: 96  YIKSIREQLNLYWPTLLFK--DNKSFWNHEWMIHGECSDPPF-NPFQYFQKTLKIRKTYD 155
            I  +   +   WPTL        +FW+HEW  HG C++    N   YF+K L ++   D
Sbjct: 89  QISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKNQID 148

Query: 156 LLAILNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDED 215
           LL+IL  A + P   +  +  +I  AI +AIG  P ++CN + ++ + QL +V +C+D  
Sbjct: 149 LLSILQGADIHPDGESY-DLVNIRNAIKSAIGYTPWIQCNVD-QSGNSQLYQVYICVDGS 208

Query: 216 GVKLIDCAKFVSTNCPLTFSWPPF 229
           G  LI+C  F    C  +  +P F
Sbjct: 209 GSSLIECPIFPGGKCGTSIEFPTF 230

[Close]
BLAST of Cp4.1LG11g10020 vs. Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-28
Identity = 72/204 (35.29%), Postives = 104/204 (50.98%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICNSEH-CI----GKPKAMFTIHGLWPQNYSTSLI---CDGS-PFAD 95
           +++F  VQQWP S C+++  C     GKP A F IHGLWP NY        CD S PF  
Sbjct: 30  FDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWP-NYKDGTYPSNCDASKPFDS 89

Query: 96  EYIKSIREQLNLYWPTLLFKDN--KSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTYD 155
             I  +   +   WPTL       ++FW HEW  HG CS+   +  +YFQ  L +++  +
Sbjct: 90  STISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNLKQKTN 149

Query: 156 LLAILNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDED 215
           LL  L  AG+ P   +  + + I  +I  +IG  P ++CN +  + + QL +V LC+D  
Sbjct: 150 LLGALTKAGINPDGKSY-SLESIRDSIKESIGFTPWVECNRD-GSGNSQLYQVYLCVDRS 209

Query: 216 GVKLIDCAKFVSTNCPLTFSWPPF 229
           G  LI+C  F    C     +P F
Sbjct: 210 GSGLIECPVFPHGKCGAEIEFPSF 230

[Close]
BLAST of Cp4.1LG11g10020 vs. Swiss-Prot
Match: RNDI_DICDI (Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 3.6e-27
Identity = 70/219 (31.96%), Postives = 109/219 (49.77%), Query Frame = 1 

Query: 13  LAFSSVQAKFQEVERPKPKPKYQYEYFQMVQQWPQSICNSEHCI-GKPKAMFTIHGLWPQ 72
           L  S+ Q+     E  KP     ++++  VQQW  S C+S+ CI  K +  FTIHGLWP+
Sbjct: 12  LIASTAQSTVTIYESSKPG---DFDFYLFVQQWIYSYCDSQTCIQNKEREAFTIHGLWPE 71

Query: 73  NYSTSL--ICDGSPFADEYIKSIREQLNLYWPTLLFKDNKSFWNHEWMIHGECS--DPPF 132
           N   S    C G  F    I+ + +QLN  WP+L    N  FW HE+  HG CS   P  
Sbjct: 72  NSDGSYPSFCSGPSFNVNAIQDLEDQLNFDWPSLT-GPNTDFWTHEFSKHGTCSITGPIT 131

Query: 133 NPFQYFQKTLKIRKTYDLLAILNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNT 192
           +   YF   +K+   +++ A L +  + P+ +      DI  AI    G KP ++C++  
Sbjct: 132 DIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPVDITNAITTHFGGKPGIQCSSG- 191

Query: 193 RTRDRQLSEVVLCLDEDGVKLIDCAKFVSTNCPLTFSWP 227
                QLS V +C+D++ + ++DC      +C  +  +P
Sbjct: 192 -----QLSTVAVCIDKNSLSIMDCPDLQGWSCSGSVKFP 220

[Close]
BLAST of Cp4.1LG11g10020 vs. Swiss-Prot
Match: RNS3_ARATH (Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.1e-27
Identity = 77/234 (32.91%), Postives = 110/234 (47.01%), Query Frame = 1 

Query: 8   FFLFYLAFSS--VQAKFQEVERPKPKPKYQYEYFQMVQQWPQSICNSEHCI-----GKPK 67
           FF+F LA     VQ+  Q+           +++F  V QWP + C+S H       GKP 
Sbjct: 3   FFIFILALQQLYVQSFAQD-----------FDFFYFVLQWPGAYCDSRHSCCYPQTGKPA 62

Query: 68  AMFTIHGLWPQNYSTS---LICD-GSPFADEYIKSIREQLNLYWPTLLF--KDNKSFWNH 127
           A F IHGLWP NY T      C+  S F D  +  +   L   WPTL     D   FW H
Sbjct: 63  ADFGIHGLWP-NYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTH 122

Query: 128 EWMIHGECSDPPFNPFQYFQKTLKIRKTYDLLAILNAAGLGPTTAALRNRDDIEKAIGAA 187
           EW  HG C++   +   YF+  LK+++  +LL  L  AG+ P       + DIE  I   
Sbjct: 123 EWEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMK-DIENTIKQV 182

Query: 188 IGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKLIDCAKFVSTNCPLTFSWPPF 229
           +G  P ++CN ++ + + QL ++ LC+D    K I+C       C     +P F
Sbjct: 183 VGFAPGIECNKDS-SHNSQLYQIYLCVDTSASKFINCPVMPHGRCDSRVQFPKF 222

[Close]
BLAST of Cp4.1LG11g10020 vs. TrEMBL
Match: A0A0A0LAN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 4.6e-45
Identity = 88/195 (45.13%), Postives = 120/195 (61.54%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICNS----EHCIGKPKAMFTIHGLWPQNYSTS-LICDGSPFADEYIK 95
           +E+FQ V+QW  ++CN+      C   P+A FTIHGLWP N+S + L+C       + I 
Sbjct: 23  FEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLCQSKTIYSKVI- 82

Query: 96  SIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTYDLLAILN 155
           S+  QLN+ WP L + +N  FW HEW  HG+CSDPPF+ FQYFQ +L + + +DLL IL 
Sbjct: 83  SLEGQLNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLNLLRKFDLLTILK 142

Query: 156 AAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKLID 215
           AAGL P T+      +I   I     + P ++CN N +T   QL+E+VLCL++DG  LID
Sbjct: 143 AAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKTGKSQLNEIVLCLEKDGATLID 202

Query: 216 CAKFVSTNCPLTFSW 226
           C  FVS  C  +F W
Sbjct: 203 CPTFVSNTCAKSFVW 216

[Close]
BLAST of Cp4.1LG11g10020 vs. TrEMBL
Match: A0A0A0LDS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.9e-43
Identity = 91/184 (49.46%), Postives = 118/184 (64.13%), Query Frame = 1 

Query: 35  QYEYFQMVQQWPQSICNSEH--CIGKPKAMFTIHGLWPQNYSTSLI--CDGSPFADEYIK 94
           QY++FQMVQQW  + C+S    C   PK MFTIHGLWP N++  ++  C    F    IK
Sbjct: 20  QYQFFQMVQQWGPAKCSSGRVKCHVTPKPMFTIHGLWPSNFTDLMLHYCSLQSFDASQIK 79

Query: 95  SIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIR--KTYDLLAI 154
           +++ +L+ YWP ++   +  FW HEW  HG CS+PPFN FQYF+  L IR  K YDL+AI
Sbjct: 80  TLQSELSKYWPDVVKGKDVDFWKHEWEKHGTCSNPPFNIFQYFELALNIRKYKKYDLMAI 139

Query: 155 LNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCN-TNTRTRDRQLSEVVLCLDEDGVK 212
           LN AGL P+T+ L   DDI   I AA+  KP+LKCN  N + ++ QL EV+LC D  GV 
Sbjct: 140 LNNAGLHPSTSKLHQYDDIADLIQAAVEAKPLLKCNDKNGQGQNNQLWEVILCFDHGGVN 199

[Close]
BLAST of Cp4.1LG11g10020 vs. TrEMBL
Match: A0A0A0LAB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736680 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.8e-41
Identity = 88/201 (43.78%), Postives = 116/201 (57.71%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICN--SEHCIGKPKAMFTIHGLWPQNYST-SLICDGSP--FADEYIK 95
           +++FQ+VQQW  +IC+     C  +P+ MFTIHGLWP N+ST  ++C  +   F    + 
Sbjct: 22  FDFFQLVQQWGPNICSPAGSKCYAQPQPMFTIHGLWPSNFSTVPILCPRTKKLFPQGKVT 81

Query: 96  SIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIR--KTYDLLAI 155
           S+ + LN YWP ++   N +FW HEW  H +C DPPF  F YF  +L+ R  KTYDLL I
Sbjct: 82  SLEQHLNKYWPDVISGKNSNFWEHEWRKHADCIDPPFTIFWYFDISLRHRMNKTYDLLTI 141

Query: 156 LNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKL 215
           LN AGL   T       ++   I  A G +P ++CN N  T+  QL E+VLC   DG  L
Sbjct: 142 LNDAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGITKKLQLKEIVLCFGNDGTTL 201

Query: 216 IDCAKFVSTNCPLTFSWPPFV 230
           IDC  FVS  C    S P FV
Sbjct: 202 IDCPSFVSNTCT---SQPKFV 219

[Close]
BLAST of Cp4.1LG11g10020 vs. TrEMBL
Match: Q40115_LUFAE (Ribonuclease (RNase LC1) OS=Luffa aegyptiaca PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 75/191 (39.27%), Postives = 112/191 (58.64%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICNSEH--CIGKPKAMFTIHGLWPQNYSTSLI-CDGSPFADEYIKSI 95
           ++ F MVQ WP ++C+ +   C+G+    FTIHG+WPQ   TS+I C G  F    I  +
Sbjct: 26  FDSFWMVQHWPPAVCSFQQGRCVGQGLRSFTIHGVWPQKGGTSVINCPGPTFDFTKISHL 85

Query: 96  REQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTYDLLAILNAA 155
              LN+ WP ++  +NK FW HEW  HG CS   F+   YFQ  + +R + DLL+ L   
Sbjct: 86  ESTLNVDWPNVITGNNKWFWGHEWNKHGICSVSKFDQQAYFQMAINMRNSIDLLSALRVG 145

Query: 156 GLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKLIDCA 215
           G+ P   + + R  ++ AI A +G++PVL+C      R  +L E+V+C D+DGV LI+C 
Sbjct: 146 GVVPNGRS-KARQRVQSAIRAQLGKEPVLRCRGT--GRQSRLLEIVMCFDDDGVTLINCN 205

Query: 216 KFVSTNCPLTF 224
              ++NCP +F
Sbjct: 206 P-ANSNCPNSF 212

[Close]
BLAST of Cp4.1LG11g10020 vs. TrEMBL
Match: A0A0A0LC37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825050 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 81/221 (36.65%), Postives = 118/221 (53.39%), Query Frame = 1 

Query: 6   VTFFLFYLAFSSVQAKFQEVERPKPKPKYQYEYFQMVQQWPQSICN--SEHCIGKPKAMF 65
           V FF+F L       K Q            ++ F  VQQWP ++C   S  C+G+    F
Sbjct: 9   VVFFVFVLTILFPIVKSQT-----------FDDFWFVQQWPPAVCTLQSGRCVGRGTRSF 68

Query: 66  TIHGLWPQNYSTSLI-CDGSPFADEYIKSIREQLNLYWPTLLFKDNKSFWNHEWMIHGEC 125
           TIHGLWPQ    S+  C G+ F    I  +   LN+ WP ++  +NK FW HEW  HG C
Sbjct: 69  TIHGLWPQKGGRSVTNCTGNQFDFTKIAHLENDLNVVWPNVVTGNNKFFWGHEWNKHGIC 128

Query: 126 SDPPFNPFQYFQKTLKIRKTYDLLAILNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLK 185
           S+  F+  +YFQ  + +R   DLL++L   G+GP  A+ + +  +E AI +  G+ P+L+
Sbjct: 129 SESKFDEAKYFQTAINMRHGIDLLSVLRTGGVGPNGAS-KAKQRVETAISSHFGKDPILR 188

Query: 186 CNTNTRTRDRQLSEVVLCLDEDGVKLIDCAKFVSTNCPLTF 224
           C          L+E+V+C D+DGV LI+C K   +NC  +F
Sbjct: 189 CK-KASNGQVLLTEIVMCFDDDGVTLINCNK-ARSNCAGSF 215

[Close]
BLAST of Cp4.1LG11g10020 vs. TAIR10
Match: AT1G14220.1 (AT1G14220.1 Ribonuclease T2 family protein)

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-30
Identity = 72/209 (34.45%), Postives = 105/209 (50.24%), Query Frame = 1 

Query: 31  KPKYQYEYFQMVQQWPQSICNSEHCI-----GKPKAMFTIHGLWPQNY---STSLICD-G 90
           +P+  +++F  V QWP + C++         GKP A F IHGLWP NY   S    CD  
Sbjct: 23  RPQEDFDFFYFVLQWPGAYCDTSRACCYPTSGKPAADFGIHGLWP-NYNGGSWPSNCDPD 82

Query: 91  SPFADEYIKSIREQLNLYWPTLLFKDNK--SFWNHEWMIHGECSDPPFNPFQYFQKTLKI 150
           S F    I  +   L   WPTL    N+  +FW HEW  HG CS+   +  +YF+  LK+
Sbjct: 83  SQFDRSQISDLVSSLKKNWPTLSCPSNEGFNFWEHEWEKHGTCSESVMDQHEYFENALKL 142

Query: 151 RKTYDLLAILNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVL 210
           ++  +LL IL  +G+ P      N D I  AI   IG  P ++CN +   R+ QL ++ +
Sbjct: 143 KQKANLLQILKNSGINPDD-GFYNLDKITNAIKDGIGFTPGIECNKDPE-RNAQLHQIYI 202

Query: 211 CLDEDGVKLIDCAKFVSTNCPLTFSWPPF 229
           C+D  G + I+C      +CP    +  F
Sbjct: 203 CVDTSGTEFIECPVLPRGSCPSQIQFSKF 228

[Close]
BLAST of Cp4.1LG11g10020 vs. TAIR10
Match: AT2G02990.1 (AT2G02990.1 ribonuclease 1)

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-29
Identity = 72/204 (35.29%), Postives = 104/204 (50.98%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICNSEH-CI----GKPKAMFTIHGLWPQNYSTSLI---CDGS-PFAD 95
           +++F  VQQWP S C+++  C     GKP A F IHGLWP NY        CD S PF  
Sbjct: 30  FDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWP-NYKDGTYPSNCDASKPFDS 89

Query: 96  EYIKSIREQLNLYWPTLLFKDN--KSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTYD 155
             I  +   +   WPTL       ++FW HEW  HG CS+   +  +YFQ  L +++  +
Sbjct: 90  STISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNLKQKTN 149

Query: 156 LLAILNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDED 215
           LL  L  AG+ P   +  + + I  +I  +IG  P ++CN +  + + QL +V LC+D  
Sbjct: 150 LLGALTKAGINPDGKSY-SLESIRDSIKESIGFTPWVECNRD-GSGNSQLYQVYLCVDRS 209

Query: 216 GVKLIDCAKFVSTNCPLTFSWPPF 229
           G  LI+C  F    C     +P F
Sbjct: 210 GSGLIECPVFPHGKCGAEIEFPSF 230

[Close]
BLAST of Cp4.1LG11g10020 vs. TAIR10
Match: AT1G26820.1 (AT1G26820.1 ribonuclease 3)

HSP 1 Score: 122.1 bits (305), Expect = 4.5e-28
Identity = 77/234 (32.91%), Postives = 110/234 (47.01%), Query Frame = 1 

Query: 8   FFLFYLAFSS--VQAKFQEVERPKPKPKYQYEYFQMVQQWPQSICNSEHCI-----GKPK 67
           FF+F LA     VQ+  Q+           +++F  V QWP + C+S H       GKP 
Sbjct: 3   FFIFILALQQLYVQSFAQD-----------FDFFYFVLQWPGAYCDSRHSCCYPQTGKPA 62

Query: 68  AMFTIHGLWPQNYSTS---LICD-GSPFADEYIKSIREQLNLYWPTLLF--KDNKSFWNH 127
           A F IHGLWP NY T      C+  S F D  +  +   L   WPTL     D   FW H
Sbjct: 63  ADFGIHGLWP-NYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTH 122

Query: 128 EWMIHGECSDPPFNPFQYFQKTLKIRKTYDLLAILNAAGLGPTTAALRNRDDIEKAIGAA 187
           EW  HG C++   +   YF+  LK+++  +LL  L  AG+ P       + DIE  I   
Sbjct: 123 EWEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMK-DIENTIKQV 182

Query: 188 IGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKLIDCAKFVSTNCPLTFSWPPF 229
           +G  P ++CN ++ + + QL ++ LC+D    K I+C       C     +P F
Sbjct: 183 VGFAPGIECNKDS-SHNSQLYQIYLCVDTSASKFINCPVMPHGRCDSRVQFPKF 222

[Close]
BLAST of Cp4.1LG11g10020 vs. TAIR10
Match: AT1G14210.1 (AT1G14210.1 Ribonuclease T2 family protein)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-21
Identity = 60/203 (29.56%), Postives = 93/203 (45.81%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICNSEH-CI----GKPKAMFTIHGLWPQ--NYSTSLICDGSPFAD-E 95
           + +F  V  WP +IC+S+  C     G   + F IHGLWPQ  N +    CD +   D  
Sbjct: 26  FNFFYWVNYWPGAICDSQKGCCPPTKGNTASDFIIHGLWPQFNNGTWPAFCDQTNLFDIS 85

Query: 96  YIKSIREQLNLYWPT----LLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTY 155
            I  +  Q+   W          +  + W HEW  HG C    F+   YF+  LK +   
Sbjct: 86  KISDLVCQMEKKWTEWGVWACPSNETNLWEHEWNKHGTCVQSIFDQHSYFRTNLKFKHKV 145

Query: 156 DLLAILNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDE 215
            LL IL   G+ P      + D+I+ AI  AIG  P ++CN + +  ++QL ++ +CLD 
Sbjct: 146 HLLNILIQKGIKPND-GFYSLDEIKNAIKCAIGFAPGIECNEDVK-GNKQLFQIYICLDN 205

Query: 216 DGVKLIDCAKFVSTNCPLTFSWP 227
              + ++C      +C     +P
Sbjct: 206 YAKEFVECPYVPDKSCASKIKFP 226

[Close]
BLAST of Cp4.1LG11g10020 vs. NCBI nr
Match: gi|700203887|gb|KGN59020.1| (hypothetical protein Csa_3G745530 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 6.6e-45
Identity = 88/195 (45.13%), Postives = 120/195 (61.54%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICNS----EHCIGKPKAMFTIHGLWPQNYSTS-LICDGSPFADEYIK 95
           +E+FQ V+QW  ++CN+      C   P+A FTIHGLWP N+S + L+C       + I 
Sbjct: 23  FEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLCQSKTIYSKVI- 82

Query: 96  SIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTYDLLAILN 155
           S+  QLN+ WP L + +N  FW HEW  HG+CSDPPF+ FQYFQ +L + + +DLL IL 
Sbjct: 83  SLEGQLNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLNLLRKFDLLTILK 142

Query: 156 AAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKLID 215
           AAGL P T+      +I   I     + P ++CN N +T   QL+E+VLCL++DG  LID
Sbjct: 143 AAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKTGKSQLNEIVLCLEKDGATLID 202

Query: 216 CAKFVSTNCPLTFSW 226
           C  FVS  C  +F W
Sbjct: 203 CPTFVSNTCAKSFVW 216

[Close]
BLAST of Cp4.1LG11g10020 vs. NCBI nr
Match: gi|700203881|gb|KGN59014.1| (hypothetical protein Csa_3G743990 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.8e-43
Identity = 91/184 (49.46%), Postives = 118/184 (64.13%), Query Frame = 1 

Query: 35  QYEYFQMVQQWPQSICNSEH--CIGKPKAMFTIHGLWPQNYSTSLI--CDGSPFADEYIK 94
           QY++FQMVQQW  + C+S    C   PK MFTIHGLWP N++  ++  C    F    IK
Sbjct: 20  QYQFFQMVQQWGPAKCSSGRVKCHVTPKPMFTIHGLWPSNFTDLMLHYCSLQSFDASQIK 79

Query: 95  SIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIR--KTYDLLAI 154
           +++ +L+ YWP ++   +  FW HEW  HG CS+PPFN FQYF+  L IR  K YDL+AI
Sbjct: 80  TLQSELSKYWPDVVKGKDVDFWKHEWEKHGTCSNPPFNIFQYFELALNIRKYKKYDLMAI 139

Query: 155 LNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCN-TNTRTRDRQLSEVVLCLDEDGVK 212
           LN AGL P+T+ L   DDI   I AA+  KP+LKCN  N + ++ QL EV+LC D  GV 
Sbjct: 140 LNNAGLHPSTSKLHQYDDIADLIQAAVEAKPLLKCNDKNGQGQNNQLWEVILCFDHGGVN 199

[Close]
BLAST of Cp4.1LG11g10020 vs. NCBI nr
Match: gi|778683692|ref|XP_011651927.1| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 9.8e-41
Identity = 88/201 (43.78%), Postives = 116/201 (57.71%), Query Frame = 1 

Query: 36  YEYFQMVQQWPQSICN--SEHCIGKPKAMFTIHGLWPQNYST-SLICDGSP--FADEYIK 95
           +++FQ+VQQW  +IC+     C  +P+ MFTIHGLWP N+ST  ++C  +   F    + 
Sbjct: 22  FDFFQLVQQWGPNICSPAGSKCYAQPQPMFTIHGLWPSNFSTVPILCPRTKKLFPQGKVT 81

Query: 96  SIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIR--KTYDLLAI 155
           S+ + LN YWP ++   N +FW HEW  H +C DPPF  F YF  +L+ R  KTYDLL I
Sbjct: 82  SLEQHLNKYWPDVISGKNSNFWEHEWRKHADCIDPPFTIFWYFDISLRHRMNKTYDLLTI 141

Query: 156 LNAAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKL 215
           LN AGL   T       ++   I  A G +P ++CN N  T+  QL E+VLC   DG  L
Sbjct: 142 LNDAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGITKKLQLKEIVLCFGNDGTTL 201

Query: 216 IDCAKFVSTNCPLTFSWPPFV 230
           IDC  FVS  C    S P FV
Sbjct: 202 IDCPSFVSNTCT---SQPKFV 219

[Close]
BLAST of Cp4.1LG11g10020 vs. NCBI nr
Match: gi|659085730|ref|XP_008443571.1| (PREDICTED: ribonuclease MC-like [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 5.6e-36
Identity = 81/193 (41.97%), Postives = 110/193 (56.99%), Query Frame = 1 

Query: 34  YQYEYFQMVQQWPQSICNS-EHCIGKPKAMFTIHGLWPQNYSTS-LICDGSPFADE-YIK 93
           Y +++FQ+V+QW  + CN    C  +P+  FTIHGLWP N+S + L C      D   I 
Sbjct: 20  YPFDFFQLVEQWGPNTCNDGTQCHAQPQPEFTIHGLWPSNFSNARLFCATRKLFDNGQIS 79

Query: 94  SIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTYDLLAILN 153
            +   L+ YWP ++  +N+ FW++EW  HG C DPPFN  QYFQ +L   +TYDLL ILN
Sbjct: 80  LLEGDLDRYWPDVINGNNRGFWSNEWKKHGACIDPPFNITQYFQLSLDHHRTYDLLKILN 139

Query: 154 AAGLGPTTAALRNR----DDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGV 213
             G+      + N      DI   I  A  +   ++CN N  T+  QL E+VLC D +G 
Sbjct: 140 --GVWHRNRQMPNNGLAPKDILNPIFNATNKTAGIRCNKNGITKKLQLHEIVLCFDNNGT 199

Query: 214 KLIDCAKFVSTNC 220
            LIDC KFVS +C
Sbjct: 200 TLIDCPKFVSNSC 210

[Close]
BLAST of Cp4.1LG11g10020 vs. NCBI nr
Match: gi|31615437|pdb|1J1F|A (Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex With 5'-Gmp)

HSP 1 Score: 156.0 bits (393), Expect = 8.0e-35
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 1 

Query: 35  QYEYFQMVQQWPQSICN---SEHCIGKPKAMFTIHGLWPQNYSTSLI-CDGSPFADEYIK 94
           +++ F  VQQWP ++C+   S  C G     FTIHGLWPQ   TSL  C GSPF    I 
Sbjct: 1   EFDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKIS 60

Query: 95  SIREQLNLYWPTLLFKDNKSFWNHEWMIHGECSDPPFNPFQYFQKTLKIRKTYDLLAILN 154
            ++ QLN  WPT+L  +N+ FW+HEW  HG CS+  FN   YF+  + +R  YD++  L 
Sbjct: 61  HLQSQLNTLWPTVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALR 120

Query: 155 AAGLGPTTAALRNRDDIEKAIGAAIGQKPVLKCNTNTRTRDRQLSEVVLCLDEDGVKLID 214
               GP     ++R  I+  + A  G+ P L+C T+ +T+   L EVV C  +DG  LID
Sbjct: 121 PHAAGP-NGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGSTLID 180

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g10020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNMC_MOMCH1.0e-3439.89Ribonuclease MC OS=Momordica charantia PE=1 SV=1[more]
RNLE_SOLLC8.6e-2934.80Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2[more]
RNS1_ARATH3.3e-2835.29Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1[more]
RNDI_DICDI3.6e-2731.96Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3[more]
RNS3_ARATH8.1e-2732.91Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1[more]
BLAST of Cp4.1LG11g10020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAN6_CUCSA4.6e-4545.13Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1[more]
A0A0A0LDS5_CUCSA1.9e-4349.46Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1[more]
A0A0A0LAB0_CUCSA6.8e-4143.78Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736680 PE=3 SV=1[more]
Q40115_LUFAE3.6e-3439.27Ribonuclease (RNase LC1) OS=Luffa aegyptiaca PE=2 SV=1[more]
A0A0A0LC37_CUCSA3.6e-3436.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825050 PE=3 SV=1[more]
BLAST of Cp4.1LG11g10020 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14220.12.8e-3034.45 Ribonuclease T2 family protein[more]
AT2G02990.11.8e-2935.29 ribonuclease 1[more]
AT1G26820.14.5e-2832.91 ribonuclease 3[more]
AT1G14210.12.4e-2129.56 Ribonuclease T2 family protein[more]
BLAST of Cp4.1LG11g10020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203887|gb|KGN59020.1|6.6e-4545.13hypothetical protein Csa_3G745530 [Cucumis sativus][more]
gi|700203881|gb|KGN59014.1|2.8e-4349.46hypothetical protein Csa_3G743990 [Cucumis sativus][more]
gi|778683692|ref|XP_011651927.1|9.8e-4143.78PREDICTED: ribonuclease MC-like [Cucumis sativus][more]
gi|659085730|ref|XP_008443571.1|5.6e-3641.97PREDICTED: ribonuclease MC-like [Cucumis melo][more]
gi|31615437|pdb|1J1F|A8.0e-3540.98Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex With 5'-Gmp[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0033897ribonuclease T2 activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR018188RNase_T2_His_AS_1
IPR001568RNase_T2-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0033897 ribonuclease T2 activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g10020.1Cp4.1LG11g10020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001568Ribonuclease T2-likeGENE3DG3DSA:3.90.730.10coord: 37..228
score: 6.7
IPR001568Ribonuclease T2-likePANTHERPTHR11240RIBONUCLEASE T2coord: 34..229
score: 1.6
IPR001568Ribonuclease T2-likePFAMPF00445Ribonuclease_T2coord: 38..211
score: 6.3
IPR001568Ribonuclease T2-likeunknownSSF55895Ribonuclease Rh-likecoord: 36..227
score: 8.9
IPR018188Ribonuclease T2, His active site 1PROSITEPS00530RNASE_T2_1coord: 63..70
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g10020Melon (DHL92) v3.6.1cpemedB123
Cp4.1LG11g10020Silver-seed gourdcarcpeB1494
Cp4.1LG11g10020Cucumber (Chinese Long) v3cpecucB0114
Cp4.1LG11g10020Wax gourdcpewgoB0114
Cp4.1LG11g10020Cucurbita pepo (Zucchini)cpecpeB139
Cp4.1LG11g10020Cucumber (Gy14) v1cgycpeB0351
Cp4.1LG11g10020Cucurbita maxima (Rimu)cmacpeB171
Cp4.1LG11g10020Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g10020Cucurbita moschata (Rifu)cmocpeB147
Cp4.1LG11g10020Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g10020Wild cucumber (PI 183967)cpecpiB100
Cp4.1LG11g10020Cucumber (Chinese Long) v2cpecuB103
Cp4.1LG11g10020Bottle gourd (USVL1VR-Ls)cpelsiB074
Cp4.1LG11g10020Watermelon (Charleston Gray)cpewcgB104
Cp4.1LG11g10020Watermelon (97103) v1cpewmB113
Cp4.1LG11g10020Melon (DHL92) v3.5.1cpemeB099
Cp4.1LG11g10020Cucumber (Gy14) v2cgybcpeB168