Cp4.1LG11g07810 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosystem II reaction center PsbP family protein
Location	Cp4.1LG11 : 6259178 .. 6262125 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGTCACACATTGAACAAATAAAATCCATATCTAATCCCAGCAGTGGACTAAAAGCATGGCGTCCCTCCCTTCACCCAGCGCTGTAATCCAGCGCCCTCGCTCATGGCGCTTCACACCATCATCACTCTCCAATGGTAATCTTCCTCGCCTTTCACTTCATGCGCCATTGTTAACTCTTATCATTTTCCTTCTTGACATTTCAGGAATCGCCATTCCTATCCGCACAAGGCTCCGTGTTTTCTGCTCTGGCAAGAACATTGACATTCCCGATCAAAAACCCTGGTAAATTGGCCTCTCTTTCTCTTTGCTTGTTATTCATTTCAATTCTATTGTTGCATCGTTGGAGTCCGAAAATTCAAATGCTCGTTCCTTCTGTTGGTTCTTAGTTGTTGGACTAGCGGAGTTAATAGACGAGAGATTGTGCTAGGAATGGGATTGACTGCGTTTTCTTTCCAAGAAGTTGTTTCTATTGCCCTAGCCGAGAGTGGTACCGATTTTACCTTGAGCGTGTTCTCTGAAATTACATTATCCCTCTTTGGTATTGTTTTTATTTGAAGATTGAATGCGTTCAGTTTACGGGTGATAGTTGTTGCTGAGGATTATCGGACGTACATAGATGAAGCGAATAAGTTCAGATTGGTGATTCCTCAAGGTGTATGGCTTGGCTCCATTGGCTGAGCTTTTTTTCTTGAGAATTAGAGATTAAACTGTATTAATTACTTGAAACTTGTGTGATTTATGCAGATTGGCAAGTCGGTAATGGTGAACCGAATGGATTCAAGTTGGTTACGGCTTTTTTTCCTAGAGAAACTTTGAGTTCCAATGGTATTGTTAGATCTTTTCTCCTTTTCTCTCCCTCGGTTCGATTTTGAATAGCTTGATCGACTGAAATTTGGTTCAGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGATACCCTGGTATGACTTTCATATCAATTAGCAGTTTTTGAAATGAAAAAAGTGGATTTCCTTTTGCTGTTTTTGAACCAAACAAGAAAACCAAAACTGGTACTCTTTTCTTGAAGTTTCTTAAATAGAAAACGACAGCCAAAATTGAAGCCAAAATGGGGTCTCGTTCTTTGCTGTTCTTGAATGGAAATAGATAGCCTAAATCTGGATTTTCCTCTTCTCGTGATATCTCTTTCAGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCATCTAAAGGTATGTGGCACATGTACAACCAGTTAACTCAGAATCTTAGCTGAAATGAAACTTAAAGGAAACTTGTTTACAAAACGTTGTAAACATGAAACTTACTTGAGAACCATAATAGATTATGCCCACCACAGGTTATTTTATTCTATTATGTGCGAATAAAGTTCCACCTTAATCGAAGAAGGGAGAGATTCATGGTATATTAAGAAACCAAAAGCAGAGCGATGAAAATTTATGCACAAAATAGACAATATCATATTAACGTAGATATATATGGAGGGTCGATTGTCATTATCTTATTCTATCGTTTTATTATATACTCGAATAAGGGAGAGATTCATGGTATATTAAGTGAGAACAAGGTCTTTTGATTGAAACCAAAAACAAAGGGATCAAGGTTTATGCACAAAATAGATAATATCATATTAACGTGGAGATATATGGAGGGTTGATTATCATTATCTTGTTCTATTGTTTTTATTATATAGCAGTTCCTGATGAGTCTACTATGTCTTCCTTAGTATGGTTCTAAAATTACATAGGCTTCTCGTCAAAACACAATGAAGTTTGATTTGAAAGAAAAAATCGCAGGGATATATTACATTGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAACCATTTATACTCTGCAATTGGGATGGCATCCAATGGTTGGTACAACAGACTTTACACCGTAACAGGACAGGTAGGTTGCTCGTAATCTCTATCAATGCACTTATTTTATTGAATGCATGATACTCGGTTTATTCTTTTATATCGTTCGACTTCTAAATGTATTGTTTTAGTAGCTCGATCTAAAAACCGTTCTAGTTCTTACTGTTAATTATTTATCAATCATTTGACAAAAATTATTGAAATGTCTTATGTTTTTCTAGGTGAGTCTTTAAATATAATATCCATCTAAATAAAATTACAAATTGGGTAAACAGACAAACAATGTTCATCTAGCATTAGAACACTTGCTAAATATATTCTAGTCTTTAATAACAAAATCCATTTTTTTCATATGAAATCTTCAAACATCATGACAATTGGTCCTACCATGTTATTTAAACAATAATTTGATGACATATCCATTTTATGATAACAAATTTGAGTATTTTCTGGTGGAATGACTTAGAAGTTAAGAATTATTTTAATATCTTGGATATATTTAGCTGTTTTTTCTTTTTGGTATGTTTACAGAATTTGTAATTTTATCTAGATTGATAATAGACAGCAAGAACTACAACGGTTTTTAGATCGAACTACTAAAATGATACATTTAGAAGTTGAATGACTAAAAAAACCGAAAGTCAACCGATATAAAAGTTGATCGAAAATAAGATGGTAGGAAATCTTTGTTTTGTTTTGATAATTGGTTTGATGTGTTGGACAGTATGGAGATGAAGATTCAGAGAAGTTTAGTTCCGAAATTAAGAAGGTTAGTGGGAGAGATATCCCAAACTCGTGCTCTTAATTTTCATACAATCTATTCTCAAAGTTCCTCTGAATGTTGGCTTTGTAGGTTGTCAATTCCTTCACTTTCATTTGATGATCCCACAGAACTGGCTTCCACTACAGTTATGTGGTTCAAGTTTTCCCTCTTTGCTTTCCTTAATATTTGCTTCAAAAAAAAAAAAAAAAAAAAAAAANAAA

mRNA sequence

AGTGTCACACATTGAACAAATAAAATCCATATCTAATCCCAGCAGTGGACTAAAAGCATGGCGTCCCTCCCTTCACCCAGCGCTGTAATCCAGCGCCCTCGCTCATGGCGCTTCACACCATCATCACTCTCCAATGGAATCGCCATTCCTATCCGCACAAGGCTCCGTGTTTTCTGCTCTGGCAAGAACATTGACATTCCCGATCAAAAACCCTGTTGTTGGACTAGCGGAGTTAATAGACGAGAGATTGTGCTAGGAATGGGATTGACTGCGTTTTCTTTCCAAGAAGTTGTTTCTATTGCCCTAGCCGAGAGTGTTGTTGCTGAGGATTATCGGACGTACATAGATGAAGCGAATAAGTTCAGATTGGTGATTCCTCAAGATTGGCAAGTCGGTAATGGTGAACCGAATGGATTCAAGTTGGTTACGGCTTTTTTTCCTAGAGAAACTTTGAGTTCCAATGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGATACCCTGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCATCTAAAGGGATATATTACATTGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAACCATTTATACTCTGCAATTGGGATGGCATCCAATGGTTGGTACAACAGACTTTACACCGTAACAGGACAGTATGGAGATGAAGATTCAGAGAAGTTTAGTTCCGAAATTAAGAAGGTTGTCAATTCCTTCACTTTCATTTGATGATCCCACAGAACTGGCTTCCACTACAGTTATGTGGTTCAAGTTTTCCCTCTTTGCTTTCCTTAATATTTGCTTCAAAAAAAAAAAAAAAAAAAAAAAANAAA

Coding sequence (CDS)

ATGGCGTCCCTCCCTTCACCCAGCGCTGTAATCCAGCGCCCTCGCTCATGGCGCTTCACACCATCATCACTCTCCAATGGAATCGCCATTCCTATCCGCACAAGGCTCCGTGTTTTCTGCTCTGGCAAGAACATTGACATTCCCGATCAAAAACCCTGTTGTTGGACTAGCGGAGTTAATAGACGAGAGATTGTGCTAGGAATGGGATTGACTGCGTTTTCTTTCCAAGAAGTTGTTTCTATTGCCCTAGCCGAGAGTGTTGTTGCTGAGGATTATCGGACGTACATAGATGAAGCGAATAAGTTCAGATTGGTGATTCCTCAAGATTGGCAAGTCGGTAATGGTGAACCGAATGGATTCAAGTTGGTTACGGCTTTTTTTCCTAGAGAAACTTTGAGTTCCAATGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGATACCCTGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCATCTAAAGGGATATATTACATTGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAACCATTTATACTCTGCAATTGGGATGGCATCCAATGGTTGGTACAACAGACTTTACACCGTAACAGGACAGTATGGAGATGAAGATTCAGAGAAGTTTAGTTCCGAAATTAAGAAGGTTGTCAATTCCTTCACTTTCATTTGA

Protein sequence

MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYIDEANKFRLVIPQDWQVGNGEPNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSEIKKVVNSFTFI

Homology

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BLAST of Cp4.1LG11g07810 vs. Swiss-Prot
Match: PPD3_ARATH (PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 2.1e-73
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 1


Query: 58  GVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYIDEANKFRLVIPQDWQVGNGEP 117
           G+ RR+++L +  + F     +S A AE+  +E +R Y DE NKF + IPQDWQVG  EP
Sbjct: 54  GMKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEP 113

Query: 118 NGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGV 177
           NGFK +TAF+P+ET +SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P GV
Sbjct: 114 NGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGV 173

Query: 178 AAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKF 237
            AKLID R+SKG YYIEYTLQNPGE R HLYSAIGMA+NGWYNRLYTVTGQ+ DE+S + 
Sbjct: 174 TAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQ 233

Query: 238 SSEIKKVVNSFTFI 252
           SS+I+K V SF FI
Sbjct: 234 SSKIQKTVKSFRFI 247

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BLAST of Cp4.1LG11g07810 vs. TrEMBL
Match: A0A0A0KDI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401450 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 2.6e-110
Identity = 207/255 (81.18%), Postives = 224/255 (87.84%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAI-PIRTRLRVFCS--GKNIDIPDQKPCCWTS 60
           MASL SPSAVI RP S RF+ SSLSNG +I PIR+ LRVFCS  G +I   ++KP    S
Sbjct: 3   MASLLSPSAVILRPHSLRFSQSSLSNGFSIIPIRSTLRVFCSANGNSIHTSNKKPSYLAS 62

Query: 61  GVNRREIVLGMGLTAFSFQEVVSIALAESVV-AEDYRTYIDEANKFRLVIPQDWQVGNGE 120
           GVNRREI+LG+G TAFSFQEV S ALAESVV AEDYRTY DEANKF LVIPQDWQVGNGE
Sbjct: 63  GVNRREIMLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGE 122

Query: 121 PNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPG 180
           PNGFK VTAFFP+ET +SNVSVVISGLGPD+TRMESFGKVEEFADTLVSGLDRSWKRPPG
Sbjct: 123 PNGFKSVTAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPG 182

Query: 181 VAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEK 240
           VAAKLIDCRSSKGIYYIEYTLQNPGE R HLYSAIGM+SNGWYNRLYT+TGQY DE+SE 
Sbjct: 183 VAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESES 242

Query: 241 FSSEIKKVVNSFTFI 252
           +SS+I+KVVNSF FI
Sbjct: 243 YSSKIEKVVNSFAFI 257

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BLAST of Cp4.1LG11g07810 vs. TrEMBL
Match: A0A0G4AMC4_9ROSI (Photosystem II reaction center PsbP family protein OS=Monsonia emarginata PE=2 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.2e-77
Identity = 151/257 (58.75%), Postives = 191/257 (74.32%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTS--- 60
           MA + SPSA+   PR    + SS   G++   R +L VFC  K+     +KP   +    
Sbjct: 1   MACVWSPSALSPCPRISHLSSSSNQRGLS-SYRKQL-VFCCNKSQGDEIEKPSFGSYVEE 60

Query: 61  --GVNRREIVLGMGLTAFSFQEVVSIALAESV-VAEDYRTYIDEANKFRLVIPQDWQVGN 120
             G  RR  VL +G  AFSF  +VS A+A+ + V E ++ Y D+ NKF+++IP DWQ+G 
Sbjct: 61  QLGSGRRGFVLELGFAAFSFPAIVSDAMAKDIDVPEGFKVYTDDENKFKILIPNDWQIGA 120

Query: 121 GEPNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRP 180
           G+PNGF  +TAF+P  T  SNVS+VISGLG DFTRMESFGKV+EFADTLVSGLDRSWK P
Sbjct: 121 GQPNGFNSITAFYPDTTSGSNVSIVISGLGADFTRMESFGKVDEFADTLVSGLDRSWKNP 180

Query: 181 PGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDS 240
           PGVAAKLIDC+SSKG+YYI+YTLQNPGEGR +LYSA+GMA NGW NRL+TVTGQ+ +ED+
Sbjct: 181 PGVAAKLIDCKSSKGMYYIQYTLQNPGEGRRYLYSALGMAYNGWVNRLFTVTGQFLEEDT 240

Query: 241 EKFSSEIKKVVNSFTFI 252
           +K+SSEI+K+V+SF FI
Sbjct: 241 DKYSSEIEKIVSSFRFI 255

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BLAST of Cp4.1LG11g07810 vs. TrEMBL
Match: V4T686_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001894mg PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.2e-76
Identity = 154/259 (59.46%), Postives = 179/259 (69.11%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCW----- 60
           MAS+       QRP    FT  + SN        +  VFC  K     D +         
Sbjct: 1   MASISPLHTWSQRPHHASFT--AFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEE 60

Query: 61  ---TSGVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYIDEANKFRLVIPQDWQV 120
               S   RRE++  +  TA SF  +VS ALA +   ED R Y DE NKF + IPQDWQ+
Sbjct: 61  QDDDSRTKRREVMFQLAFTACSFPAIVSYALAAN---EDLRVYTDELNKFEISIPQDWQL 120

Query: 121 GNGEPNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWK 180
           G GEPNGFK +TAF+P+E  SS+VSVVI+GLGPDFTRMESFGKVE FADTLVSGLDRSW+
Sbjct: 121 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 180

Query: 181 RPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDE 240
           RPPGVAAKLIDC++SKG YYIEYTLQNPGE R HL+SAIGMASNGWYNRLYTVTGQ+ +E
Sbjct: 181 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 240

Query: 241 DSEKFSSEIKKVVNSFTFI 252
           +SEK+ S I+K V SF FI
Sbjct: 241 ESEKYGSNIEKAVASFRFI 254

[Close]

BLAST of Cp4.1LG11g07810 vs. TrEMBL
Match: A0A067H085_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024710mg PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.2e-76
Identity = 154/259 (59.46%), Postives = 179/259 (69.11%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCW----- 60
           MAS+       QRP    FT  + SN        +  VFC  K     D +         
Sbjct: 11  MASISPLHTWSQRPHHASFT--AFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEE 70

Query: 61  ---TSGVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYIDEANKFRLVIPQDWQV 120
               S   RRE++  +  TA SF  +VS ALA +   ED R Y DE NKF + IPQDWQ+
Sbjct: 71  QDDDSRTKRREVMFQLAFTACSFPAIVSYALAAN---EDLRVYTDELNKFEISIPQDWQL 130

Query: 121 GNGEPNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWK 180
           G GEPNGFK +TAF+P+E  SS+VSVVI+GLGPDFTRMESFGKVE FADTLVSGLDRSW+
Sbjct: 131 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 190

Query: 181 RPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDE 240
           RPPGVAAKLIDC++SKG YYIEYTLQNPGE R HL+SAIGMASNGWYNRLYTVTGQ+ +E
Sbjct: 191 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 250

Query: 241 DSEKFSSEIKKVVNSFTFI 252
           +SEK+ S I+K V SF FI
Sbjct: 251 ESEKYGSNIEKAVASFRFI 264

[Close]

BLAST of Cp4.1LG11g07810 vs. TrEMBL
Match: A0A0G4ANK1_9ROSI (Photosystem II reaction center PsbP family protein OS=Hypseocharis bilobata PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.2e-76
Identity = 146/256 (57.03%), Postives = 187/256 (73.05%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRT--RLRVFCSGKNIDIPDQKPCCWTS- 60
           MAS+ SP A+   PR    T SS +  ++   +   +  VFC        DQKP  +   
Sbjct: 1   MASVWSPGALSPSPRICHLTSSSSNPKVSSGFKKYRKQNVFCYQG-----DQKPSLYVQE 60

Query: 61  --GVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYIDEANKFRLVIPQDWQVGNG 120
             G  RR  +L MGLTAFSF  +VS ALA+  V E +R Y D+ NKF+++IP+DW++G  
Sbjct: 61  QLGSRRRGFILEMGLTAFSFPAIVSDALAKDDVPEGFRLYTDDENKFKILIPEDWRIGEA 120

Query: 121 EPNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPP 180
           +P GF  +TAF+P    +SNVS+VI+GLG DFTRMESFGKVE FA+TLVSGLDRSWK PP
Sbjct: 121 QPKGFNSITAFYPGVASNSNVSIVITGLGADFTRMESFGKVESFAETLVSGLDRSWKNPP 180

Query: 181 GVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSE 240
           GVAAKLIDC++SKG+YY+EYTLQNPGE R +LYSA+GMASNGW NRL+TVTGQ+ +E+ E
Sbjct: 181 GVAAKLIDCKASKGMYYVEYTLQNPGETRRYLYSALGMASNGWVNRLFTVTGQFVEEERE 240

Query: 241 KFSSEIKKVVNSFTFI 252
           K+SS+++KVV+SF FI
Sbjct: 241 KYSSKVEKVVSSFRFI 251

[Close]

BLAST of Cp4.1LG11g07810 vs. TAIR10
Match: AT1G76450.1 (AT1G76450.1 Photosystem II reaction center PsbP family protein)

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-74
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 1


Query: 58  GVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYIDEANKFRLVIPQDWQVGNGEP 117
           G+ RR+++L +  + F     +S A AE+  +E +R Y DE NKF + IPQDWQVG  EP
Sbjct: 54  GMKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEP 113

Query: 118 NGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGV 177
           NGFK +TAF+P+ET +SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P GV
Sbjct: 114 NGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGV 173

Query: 178 AAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKF 237
            AKLID R+SKG YYIEYTLQNPGE R HLYSAIGMA+NGWYNRLYTVTGQ+ DE+S + 
Sbjct: 174 TAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQ 233

Query: 238 SSEIKKVVNSFTFI 252
           SS+I+K V SF FI
Sbjct: 234 SSKIQKTVKSFRFI 247

[Close]

BLAST of Cp4.1LG11g07810 vs. NCBI nr
Match: gi|449458059|ref|XP_004146765.1| (PREDICTED: psbP domain-containing protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 3.7e-110
Identity = 207/255 (81.18%), Postives = 224/255 (87.84%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAI-PIRTRLRVFCS--GKNIDIPDQKPCCWTS 60
           MASL SPSAVI RP S RF+ SSLSNG +I PIR+ LRVFCS  G +I   ++KP    S
Sbjct: 3   MASLLSPSAVILRPHSLRFSQSSLSNGFSIIPIRSTLRVFCSANGNSIHTSNKKPSYLAS 62

Query: 61  GVNRREIVLGMGLTAFSFQEVVSIALAESVV-AEDYRTYIDEANKFRLVIPQDWQVGNGE 120
           GVNRREI+LG+G TAFSFQEV S ALAESVV AEDYRTY DEANKF LVIPQDWQVGNGE
Sbjct: 63  GVNRREIMLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGE 122

Query: 121 PNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPG 180
           PNGFK VTAFFP+ET +SNVSVVISGLGPD+TRMESFGKVEEFADTLVSGLDRSWKRPPG
Sbjct: 123 PNGFKSVTAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPG 182

Query: 181 VAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEK 240
           VAAKLIDCRSSKGIYYIEYTLQNPGE R HLYSAIGM+SNGWYNRLYT+TGQY DE+SE 
Sbjct: 183 VAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESES 242

Query: 241 FSSEIKKVVNSFTFI 252
           +SS+I+KVVNSF FI
Sbjct: 243 YSSKIEKVVNSFAFI 257

[Close]

BLAST of Cp4.1LG11g07810 vs. NCBI nr
Match: gi|659129710|ref|XP_008464804.1| (PREDICTED: psbP domain-containing protein 3, chloroplastic [Cucumis melo])

HSP 1 Score: 396.4 bits (1017), Expect = 3.8e-107
Identity = 202/253 (79.84%), Postives = 220/253 (86.96%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAI-PIRTRLRVFCSGKNIDIPDQKPCCWTSGV 60
           M SL SPSA+IQRP S+RF+ SSLSNG +I PIR+ LRVFCS       ++KP    S V
Sbjct: 3   MPSLLSPSALIQRPHSFRFSQSSLSNGFSIFPIRSTLRVFCSA------NKKPSYLASRV 62

Query: 61  NRREIVLGMGLTAFSFQEVVSIALAESVV-AEDYRTYIDEANKFRLVIPQDWQVGNGEPN 120
           NRREI+LG+G TAFS QEVVS ALAESVV AEDYRTY DEANKF LVIPQDWQVGNGEPN
Sbjct: 63  NRREIMLGIGFTAFSLQEVVSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPN 122

Query: 121 GFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVA 180
           GFK VTAFFP+ET +SNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVA
Sbjct: 123 GFKSVTAFFPQETSTSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVA 182

Query: 181 AKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFS 240
           AKLI+CRSSKGIYYIEYTLQNPGE R HLYSAIGM SNGWYNRLYT+TGQY DE+S  +S
Sbjct: 183 AKLINCRSSKGIYYIEYTLQNPGESRRHLYSAIGMTSNGWYNRLYTITGQYADEESANYS 242

Query: 241 SEIKKVVNSFTFI 252
           S+I+KVVNSF+FI
Sbjct: 243 SKIEKVVNSFSFI 249

[Close]

BLAST of Cp4.1LG11g07810 vs. NCBI nr
Match: gi|836713202|gb|AKM76623.1| (photosystem II reaction center PsbP family protein [Monsonia emarginata])

HSP 1 Score: 297.0 bits (759), Expect = 3.2e-77
Identity = 151/257 (58.75%), Postives = 191/257 (74.32%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTS--- 60
           MA + SPSA+   PR    + SS   G++   R +L VFC  K+     +KP   +    
Sbjct: 1   MACVWSPSALSPCPRISHLSSSSNQRGLS-SYRKQL-VFCCNKSQGDEIEKPSFGSYVEE 60

Query: 61  --GVNRREIVLGMGLTAFSFQEVVSIALAESV-VAEDYRTYIDEANKFRLVIPQDWQVGN 120
             G  RR  VL +G  AFSF  +VS A+A+ + V E ++ Y D+ NKF+++IP DWQ+G 
Sbjct: 61  QLGSGRRGFVLELGFAAFSFPAIVSDAMAKDIDVPEGFKVYTDDENKFKILIPNDWQIGA 120

Query: 121 GEPNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRP 180
           G+PNGF  +TAF+P  T  SNVS+VISGLG DFTRMESFGKV+EFADTLVSGLDRSWK P
Sbjct: 121 GQPNGFNSITAFYPDTTSGSNVSIVISGLGADFTRMESFGKVDEFADTLVSGLDRSWKNP 180

Query: 181 PGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDS 240
           PGVAAKLIDC+SSKG+YYI+YTLQNPGEGR +LYSA+GMA NGW NRL+TVTGQ+ +ED+
Sbjct: 181 PGVAAKLIDCKSSKGMYYIQYTLQNPGEGRRYLYSALGMAYNGWVNRLFTVTGQFLEEDT 240

Query: 241 EKFSSEIKKVVNSFTFI 252
           +K+SSEI+K+V+SF FI
Sbjct: 241 DKYSSEIEKIVSSFRFI 255

[Close]

BLAST of Cp4.1LG11g07810 vs. NCBI nr
Match: gi|568839777|ref|XP_006473855.1| (PREDICTED: psbP domain-containing protein 3, chloroplastic isoform X3 [Citrus sinensis])

HSP 1 Score: 294.3 bits (752), Expect = 2.0e-76
Identity = 154/257 (59.92%), Postives = 179/257 (69.65%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWT---- 60
           MAS+       QRP    FT  + SN        +  VFC  K     D +         
Sbjct: 11  MASISPLHTWSQRPHHASFT--AFSNNKGTNQYKKQFVFCCKKQEQEDDARTLFRIEEQD 70

Query: 61  --SGVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYIDEANKFRLVIPQDWQVGN 120
             S   RRE++  +  TA SF  +VS ALA +   ED R Y DE NKF + IPQDWQ+G 
Sbjct: 71  DDSRTKRREVMFQLAFTACSFPAIVSYALAAN---EDLRVYTDELNKFEISIPQDWQLGA 130

Query: 121 GEPNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRP 180
           GEPNGFK +TAF+P+E  SS+VSVVI+GLGPDFTRMESFGKVE FADTLVSGLDRSW+RP
Sbjct: 131 GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRP 190

Query: 181 PGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDS 240
           PGVAAKLIDC++SKG YYIEYTLQNPGE R HL+SAIGMASNGWYNRLYTVTGQ+ +E+S
Sbjct: 191 PGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEES 250

Query: 241 EKFSSEIKKVVNSFTFI 252
           EK+ S I+K V SF FI
Sbjct: 251 EKYGSNIEKAVASFRFI 262

[Close]

BLAST of Cp4.1LG11g07810 vs. NCBI nr
Match: gi|567885773|ref|XP_006435445.1| (hypothetical protein CICLE_v10001894mg [Citrus clementina])

HSP 1 Score: 293.1 bits (749), Expect = 4.6e-76
Identity = 154/259 (59.46%), Postives = 179/259 (69.11%), Query Frame = 1


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCW----- 60
           MAS+       QRP    FT  + SN        +  VFC  K     D +         
Sbjct: 1   MASISPLHTWSQRPHHASFT--AFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEE 60

Query: 61  ---TSGVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYIDEANKFRLVIPQDWQV 120
               S   RRE++  +  TA SF  +VS ALA +   ED R Y DE NKF + IPQDWQ+
Sbjct: 61  QDDDSRTKRREVMFQLAFTACSFPAIVSYALAAN---EDLRVYTDELNKFEISIPQDWQL 120

Query: 121 GNGEPNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWK 180
           G GEPNGFK +TAF+P+E  SS+VSVVI+GLGPDFTRMESFGKVE FADTLVSGLDRSW+
Sbjct: 121 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 180

Query: 181 RPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDE 240
           RPPGVAAKLIDC++SKG YYIEYTLQNPGE R HL+SAIGMASNGWYNRLYTVTGQ+ +E
Sbjct: 181 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 240

Query: 241 DSEKFSSEIKKVVNSFTFI 252
           +SEK+ S I+K V SF FI
Sbjct: 241 ESEKYGSNIEKAVASFRFI 254

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPD3_ARATH	2.1e-73	66.49	PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 ...	[more]

BLAST of Cp4.1LG11g07810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDI5_CUCSA	2.6e-110	81.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401450 PE=4 SV=1	[more]
A0A0G4AMC4_9ROSI	2.2e-77	58.75	Photosystem II reaction center PsbP family protein OS=Monsonia emarginata PE=2 S...	[more]
V4T686_9ROSI	3.2e-76	59.46	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001894mg PE=4 SV=1	[more]
A0A067H085_CITSI	3.2e-76	59.46	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024710mg PE=4 SV=1	[more]
A0A0G4ANK1_9ROSI	4.2e-76	57.03	Photosystem II reaction center PsbP family protein OS=Hypseocharis bilobata PE=2...	[more]

BLAST of Cp4.1LG11g07810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76450.1	1.2e-74	66.49	Photosystem II reaction center PsbP family protein	[more]

BLAST of Cp4.1LG11g07810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458059\|ref\|XP_004146765.1\|	3.7e-110	81.18	PREDICTED: psbP domain-containing protein 3, chloroplastic [Cucumis sativus]	[more]
gi\|659129710\|ref\|XP_008464804.1\|	3.8e-107	79.84	PREDICTED: psbP domain-containing protein 3, chloroplastic [Cucumis melo]	[more]
gi\|836713202\|gb\|AKM76623.1\|	3.2e-77	58.75	photosystem II reaction center PsbP family protein [Monsonia emarginata]	[more]
gi\|568839777\|ref\|XP_006473855.1\|	2.0e-76	59.92	PREDICTED: psbP domain-containing protein 3, chloroplastic isoform X3 [Citrus si...	[more]
gi\|567885773\|ref\|XP_006435445.1\|	4.6e-76	59.46	hypothetical protein CICLE_v10001894mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0019898	extrinsic component of membrane
GO:0009654	photosystem II oxygen evolving complex
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016123	Mog1/PsbP_a/b/a-sand
IPR002683	PsbP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044723	single-organism carbohydrate metabolic process
biological_process	GO:0044711	single-organism biosynthetic process
biological_process	GO:0009639	response to red or far red light
biological_process	GO:0009657	plastid organization
biological_process	GO:1901564	organonitrogen compound metabolic process
biological_process	GO:1901362	organic cyclic compound biosynthetic process
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0018130	heterocycle biosynthetic process
biological_process	GO:0010467	gene expression
biological_process	GO:0051186	cofactor metabolic process
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0019438	aromatic compound biosynthetic process
biological_process	GO:0010114	response to red light
biological_process	GO:0015979	photosynthesis
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07810.1	Cp4.1LG11g07810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 79..250 score: 3.8
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 90..249 score: 8.8
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 93..250 score: 1.41
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 58..251 score: 6.5E
None	No IPR available	PANTHER	PTHR31407:SF17	PSBP DOMAIN-CONTAINING PROTEIN 3, CHLOROPLASTIC	coord: 58..251 score: 6.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g07810	Cucsa.005240	Cucumber (Gy14) v1	cgycpeB0088
Cp4.1LG11g07810	CmaCh05G009600	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g07810	CmoCh05G009810	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g07810	Cla021914	Watermelon (97103) v1	cpewmB100
Cp4.1LG11g07810	Csa6G401450	Cucumber (Chinese Long) v2	cpecuB121
Cp4.1LG11g07810	MELO3C026518	Melon (DHL92) v3.5.1	cpemeB090
Cp4.1LG11g07810	ClCG08G009180	Watermelon (Charleston Gray)	cpewcgB123
Cp4.1LG11g07810	CSPI06G20900	Wild cucumber (PI 183967)	cpecpiB119
Cp4.1LG11g07810	Lsi08G007690	Bottle gourd (USVL1VR-Ls)	cpelsiB099
Cp4.1LG11g07810	MELO3C026518.2	Melon (DHL92) v3.6.1	cpemedB113
Cp4.1LG11g07810	CsaV3_6G035930	Cucumber (Chinese Long) v3	cpecucB0135
Cp4.1LG11g07810	Bhi04G000953	Wax gourd	cpewgoB0139
Cp4.1LG11g07810	CsGy6G020240	Cucumber (Gy14) v2	cgybcpeB717
Cp4.1LG11g07810	Carg21896	Silver-seed gourd	carcpeB0297

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g07810	Silver-seed gourd	carcpeB0191
Cp4.1LG11g07810	Silver-seed gourd	carcpeB0483
Cp4.1LG11g07810	Cucurbita pepo (Zucchini)	cpecpeB149
Cp4.1LG11g07810	Cucurbita maxima (Rimu)	cmacpeB181
Cp4.1LG11g07810	Cucurbita moschata (Rifu)	cmocpeB155