Cp4.1LG11g07500 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Paired amphipathic helix SIN3-like protein
Location	Cp4.1LG11 : 5683162 .. 5686972 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTGCTCAACTCTTGCTCATTCGACAAAGCTTCCGCAGATTTTCTTCAGGTAATCGTTTATCTTTTTCTTCCATAATCGTGTCTTTGTTGCCTTGCTATGAACAAATGTTAATTGTTTTCGTTCCTTCGATCTTCTTGTTCTTTTAGGATTTTATTGTCGTGTGTTGCTATCAAGAAATGTGAATTTGTTTTGTTCCTTCAATCTTTTTGTTCTTTTAGGATTTTATTATCGTTGCGTTGCTATCAAGAAATGTGAACTGGTTTGTTCTTTTAGGATTTTATTATCGTTGCTTTCAATCGAGAAGTATATTGGTTATGGTTGAGGATTAAATGAAAACTAATGATCAGGATAGAGGTTTGCCAAATCAATAGAATAGGACGTGCTTGTGTCTGTATCTTGATACTGGTTCAGTAGTGAGTTCTATAGATCACCGTAGTTAACAGGTGCTTTGTCAGAAATGAAGAACCGCGGGGAGGCAGATGGAAGTATCCGGAAATTAACAGCGGAGGATGCCTTAGAATTTCTCAAGAATGTGAAGGACGTCATTGGAAACGAGACGGAAAAATATGAAGAATTTCTTCAACTCATGAAGGATTTAGCGTTTCAAAGGTTTGGTTGCAATATAAAATATCTAGTTTATAGGTTTCTCCATTTGAGTTTTGAAGTGATCTGTGTTGTTATCGATTTGCAGAATTGACATTGTGGGCGTCATAACAGGGGTAAAGCGTCTATTCAGAGGTCATAATGACCTGATTTTGGGCTTTAATACTTTTTTGCCACAAAGATATGCAATAGCTTGTCCTCTTGAGGATGAAACGCCTCCTCGAAGGAGGCGGCCTCTTAAACTTGGAGACGCTTTGGACTATGTCAGTGAGGTTAAGGTAAATTTTGTCTCAAAACTTGAAAACTTTCATTTTAACCATTGAAGTTTGGAATTTGAAGTTTTTTCTCGTTAAATTCATGATGGAAAAGTTTGTATCTGCTTATATATTGTTGAAATGAACAATCTAAACACATGCGGGATGAAAATTTTGGTTTAGGTTTAGTGAAGAAGTTACAAACAGAAGAAAGAAAATTTGGGGCTTGAGGTTGAAGGATGAGGACGACCAGATGAACAATGTGTTTCTATTGTTCACTTATGCAAATTAAACCTTTTTTGTCTATGAATTTAATAGCGAAAGGTTGTTTTGAAACAAACTTCAAACTTCAAACGTTAAAATGAAGCATTTACGAGTTTCAGTATAAATGAAACCAACTTCGTAGTTTAGGAGTACTTTCAATCACTTTTTGACGTAGTTTGATGTCATTATTTTGCTTTCCTGCATTGTATACATTTTTGTTTTTGTAAATGCAGAGACGGTTTGAAGGTGAGTTCCATATATTCAATTCATTTATGAGAAATTTGCATTTGTACAAAAGAGGAAAAAAGCCTCTAAGTGAGCTCCACCGGGAGGTTTGTTTTCACTTTTCAAGTTCAAGTAAGAAACAAAATTGCTGTTTTTGTTGCTTCATTTAAGATTAATAGTTTTGGGTTTGCAGGTTTGTGTACTGATGCAAGACCACCCAGACCTTGTTGAGGGTTTTGCTGATTTTCTTCCTTGTCCTTCACTCACAACAACCTCAAACAATGATCCTGAGCAGAACATTGGTGTTGACCGTCCTGATGAAGAAGGTGATGAGCTTTCTGAAGTGGGTTTCATAATGTCCTAATCATAATGCAATGAAAAGTTAATATTGTTTTCATTACACATCCTTTCTGCTTGGTGGTTCGGTTTGGTTATTCAAGTTTTTCGTCTCTGTTTAAACAAGATCTTGGCATTGATCAATATCTTTGTTCTTGTTGTTGTTTAACAAGCCATTTTTGAGTATTCTTTTTGTTGCATCTGTATTCTTGGTGTCGGTGTTTCTTGTTCTCGCAAGTGTTCTAGCTTTTAGTCCTATTGATTCTCTTTTTGCATTCAATTCTTCTTCCTTTTCACCAATCAATCAAAAGTTTGTTTCGTTTCTTTCTTTGGGATCTGTAATATTGTCCTGTATTTCATGACAGGTATGTCTTTAATTGAGAAGATGAATCAAAAGTTACGAGAAGTTGACGTTCCACAACAATTTGTGAAATGCCTTGATGTTTTTGACAGGGAAATAATCACTCCATCGGAACTGCATTCTATGGTATAGAAGAAACTCATTTGTTACTCTTATATTGGAAACTATGGATCATGCTCAATATTCTTGTGTTCTCAAGGGAAGATGTTTACTGATGTTGACGTGTCTGACAGGTGGCTCTTCTACTAATTACACGTGTAGCTGACGTGGACACGGAACACAGTGAAGATTTCTATAAGCGTTCAACTTTCAGGTTAGCATGTTTCTCCCTGTTTTTGTTTTTTGCTTTACTCTTCAACTCAATCCTTCTCACATTCAATTGCACCATTTTCTTGAATTTGAGTCGAGTCTGGAGGCTCTTGGTTTGATTACCCTTCAAAAGAAACTGTCACAGACTTAGGTTTTCATAATTTTGAACTTGAAAAAAGCTTGAATATGGGTCAGTTTTGTAACTCACATCTCAATCTTCCTTTAATCATGAACAAGGGAATTGATGGTTTGGTAAAGATTAGTTCCCTTTCAAACTCTTGAGTAAATATCTTATTAGATCAGTCTTTAACCTTTTAGGGAAGCTTGAAGATAAGTCCAAGTCTAAACCATAATAGAAAATTAAGACAAAATTCTTATCAAGGAAGAACTTGCTTTTTTGTTTTTAATTTTTAAATATGGAGCTTTATTAATACTATTTACACCTATTAATTTCTTTGTTTTGTTACCTATTTTATACTAAAAAATTTAAAATTTAAAATTTAAATTTATTGAACACTAATTTAATTATCTAAGTTAGTTTTGAAAAAAGATTGTAGTTCCACAAAGTCTCTTATACTAACTCGATAGGTTTTAAAATTAAGACTATATAAGAAATCTAATTTTATTTTTATTTTGTCTTCTCCCTCTTTGTCGTTTTTTTTTTTGTCTTTTTCTTTTATGATCAGTTGCTTCACTACCTTGATTTCCAACTTGTCTTGTCTATAGTAAGTAATTAATACTAAATTGTTGTGATTTAGTTATTATAACTAAAATAATGTCTATTTTTGTGCTTTAAATATAAAACTATGTAATAAAGATGGATATCTAACTTTATATATAAAATAGGGAAATAGACGTGATAAATAATAATTTTTTTAAAATGTCCATTTCAGTAATAAACTCCTAATTTATGTGATTTTTTTTTTCCTTTTTTCAAGTTTTTATTTATTTATTTATTTATTTTAATTTTGAAACAGGAATGGATGCAGGATTACAAATATCACCTTGAAAAAATGACAATGACCAATCCAAAAGCCATAAACAAAAAAAATTGAAGTAATTAAACACAAAATCAATAGTTTAAAAATATAGCAGATATCATTTAGGGGTAGTAACATACATCACCATATTCAATTAGGTATTTTTGTTAGATGAACACGACTTCATAATGGTATGATATTGTTCACTTTGAGAATAAGTTTTCTTGACTTTACATTGGATTTCTCGAAAAGGCTCACACGAGGAGGGCTCATCCATGAAGAGAGTATTCTTTGATTGGGCTTCCCCAAAAGATTCATACATGAGTATTCTTTTATTATTATTCTTTTATTATTAACTATGATGATTCCCTAAATTAGTTAAGACTTAAATTTCTTTTTATAAAATTTACAGGTTTGAGAGAAAAAAAATAAAAAATTAAAATGATGGTGGCGCCGGCGGCCTGCGAGATAATATGA

mRNA sequence

TACTGCTCAACTCTTGCTCATTCGACAAAGCTTCCGCAGATTTTCTTCAGAAATGAAGAACCGCGGGGAGGCAGATGGAAGTATCCGGAAATTAACAGCGGAGGATGCCTTAGAATTTCTCAAGAATGTGAAGGACGTCATTGGAAACGAGACGGAAAAATATGAAGAATTTCTTCAACTCATGAAGGATTTAGCGTTTCAAAGAATTGACATTGTGGGCGTCATAACAGGGGTAAAGCGTCTATTCAGAGGTCATAATGACCTGATTTTGGGCTTTAATACTTTTTTGCCACAAAGATATGCAATAGCTTGTCCTCTTGAGGATGAAACGCCTCCTCGAAGGAGGCGGCCTCTTAAACTTGGAGACGCTTTGGACTATGTCAGTGAGGTTAAGAGACGGTTTGAAGGTGAGTTCCATATATTCAATTCATTTATGAGAAATTTGCATTTGTACAAAAGAGGAAAAAAGCCTCTAAGTGAGCTCCACCGGGAGGTTTGTGTACTGATGCAAGACCACCCAGACCTTGTTGAGGGTTTTGCTGATTTTCTTCCTTGTCCTTCACTCACAACAACCTCAAACAATGATCCTGAGCAGAACATTGGTGTTGACCGTCCTGATGAAGAAGGTATGTCTTTAATTGAGAAGATGAATCAAAAGTTACGAGAAGTTGACGTTCCACAACAATTTGTGAAATGCCTTGATGTTTTTGACAGGGAAATAATCACTCCATCGGAACTGCATTCTATGGTGGCTCTTCTACTAATTACACGTGTAGCTGACGTGGACACGGAACACAGTGAAGATTTCTATAAGCGTTCAACTTTCAGGAATGGATGCAGGATTACAAATATCACCTTGAAAAAATGACAATGACCAATCCAAAAGCCATAAACAAAAAAAATTGAAGTAATTAAACACAAAATCAATAGTTTAAAAATATAGCAGATATCATTTAGGGGTAGTAACATACATCACCATATTCAATTAGGTATTTTTGTTAGATGAACACGACTTCATAATGGTATGATATTGTTCACTTTGAGAATAAGTTTTCTTGACTTTACATTGGATTTCTCGAAAAGGCTCACACGAGGAGGGCTCATCCATGAAGAGAGTATTCTTTGATTGGGCTTCCCCAAAAGATTCATACATGAGTATTCTTTTATTATTATTCTTTTATTATTAACTATGATGATTCCCTAAATTAGTTAAGACTTAAATTTCTTTTTATAAAATTTACAGGTTTGAGAGAAAAAAAATAAAAAATTAAAATGATGGTGGCGCCGGCGGCCTGCGAGATAATATGA

Coding sequence (CDS)

ATGAAGAACCGCGGGGAGGCAGATGGAAGTATCCGGAAATTAACAGCGGAGGATGCCTTAGAATTTCTCAAGAATGTGAAGGACGTCATTGGAAACGAGACGGAAAAATATGAAGAATTTCTTCAACTCATGAAGGATTTAGCGTTTCAAAGAATTGACATTGTGGGCGTCATAACAGGGGTAAAGCGTCTATTCAGAGGTCATAATGACCTGATTTTGGGCTTTAATACTTTTTTGCCACAAAGATATGCAATAGCTTGTCCTCTTGAGGATGAAACGCCTCCTCGAAGGAGGCGGCCTCTTAAACTTGGAGACGCTTTGGACTATGTCAGTGAGGTTAAGAGACGGTTTGAAGGTGAGTTCCATATATTCAATTCATTTATGAGAAATTTGCATTTGTACAAAAGAGGAAAAAAGCCTCTAAGTGAGCTCCACCGGGAGGTTTGTGTACTGATGCAAGACCACCCAGACCTTGTTGAGGGTTTTGCTGATTTTCTTCCTTGTCCTTCACTCACAACAACCTCAAACAATGATCCTGAGCAGAACATTGGTGTTGACCGTCCTGATGAAGAAGGTATGTCTTTAATTGAGAAGATGAATCAAAAGTTACGAGAAGTTGACGTTCCACAACAATTTGTGAAATGCCTTGATGTTTTTGACAGGGAAATAATCACTCCATCGGAACTGCATTCTATGGTGGCTCTTCTACTAATTACACGTGTAGCTGACGTGGACACGGAACACAGTGAAGATTTCTATAAGCGTTCAACTTTCAGGAATGGATGCAGGATTACAAATATCACCTTGAAAAAATGA

Protein sequence

MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIGVDRPDEEGMSLIEKMNQKLREVDVPQQFVKCLDVFDREIITPSELHSMVALLLITRVADVDTEHSEDFYKRSTFRNGCRITNITLKK

Homology

[Close]

BLAST of Cp4.1LG11g07500 vs. Swiss-Prot
Match: SNL3_ARATH (Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana GN=SNL3 PE=1 SV=3)

HSP 1 Score: 160.2 bits (404), Expect = 3.1e-38
Identity = 82/193 (42.49%), Postives = 126/193 (65.28%), Query Frame = 1


Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS +KLT  DAL +LK VKD   ++  KY+EFL++MK+   QR+D  GVIT VK LF+GH
Sbjct: 5   GSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGH 64

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            +LILGFNTFLP+ + I    ED  PP ++R ++  +A+ +V+++K RF+G+  ++ SF+
Sbjct: 65  QELILGFNTFLPKGFEITLQPEDGQPPLKKR-VEFEEAISFVNKIKTRFQGDDRVYKSFL 124

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIGVDRP 188
             L++Y+R  K ++E+++EV +L +DH DL+  F  FLP  S T +    P     V   
Sbjct: 125 DILNMYRRDSKSITEVYQEVAILFRDHSDLLVEFTHFLPDTSATASI---PSVKTSV--- 184

Query: 189 DEEGMSLIEKMNQ 202
            E G+SL +K ++
Sbjct: 185 RERGVSLADKKDR 190

[Close]

BLAST of Cp4.1LG11g07500 vs. Swiss-Prot
Match: SNL4_ARATH (Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3)

HSP 1 Score: 158.7 bits (400), Expect = 9.1e-38
Identity = 72/168 (42.86%), Postives = 116/168 (69.05%), Query Frame = 1


Query: 10  SIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHN 69
           S +KLT  DAL +LK VKD   ++ +KY+EFL++MKD   QR+D  GVI  VK LF+G+ 
Sbjct: 6   SAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKELFKGNR 65

Query: 70  DLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMR 129
           +LILGFNTFLP+ + I    ED+ P   ++P++  +A+ +V+++K RF+G+  ++ SF+ 
Sbjct: 66  ELILGFNTFLPKGFEITLRPEDDQPAAPKKPVEFEEAISFVNKIKTRFQGDDRVYKSFLD 125

Query: 130 NLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN 178
            L++Y++  K ++E++ EV +L +DH DL+  F  FLP  S T ++N+
Sbjct: 126 ILNMYRKENKSITEVYHEVAILFRDHHDLLGEFTHFLPDTSATASTND 173

[Close]

BLAST of Cp4.1LG11g07500 vs. Swiss-Prot
Match: SNL1_ARATH (Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 4.7e-34
Identity = 68/156 (43.59%), Postives = 106/156 (67.95%), Query Frame = 1


Query: 12  RKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHNDL 71
           +KLT  DAL +L+ VK++  ++ EKY+ FL++MKD   QR D  GVI  VK LF+GHN+L
Sbjct: 51  QKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNNL 110

Query: 72  ILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMRNL 131
           I GFNTFLP+ Y I    ED+  P++   ++   A+++V+++K RF+ + H++ SF+  L
Sbjct: 111 IYGFNTFLPKGYEITLIEEDDALPKKT--VEFEQAINFVNKIKMRFKHDEHVYKSFLEIL 170

Query: 132 HLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLP 168
           ++Y++  K + E++ EV +L Q H DL+E F  FLP
Sbjct: 171 NMYRKENKEIKEVYNEVSILFQGHLDLLEQFTRFLP 204

[Close]

BLAST of Cp4.1LG11g07500 vs. Swiss-Prot
Match: SNL5_ARATH (Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana GN=SNL5 PE=2 SV=3)

HSP 1 Score: 143.7 bits (361), Expect = 3.0e-33
Identity = 75/171 (43.86%), Postives = 109/171 (63.74%), Query Frame = 1


Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           G+   LT  DAL +LK VKD+  +  EKYE FL +MKD   QR+D  GVI  VK LF+G+
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
           +DL+LGFNTFLP+ Y I    EDE P   ++P+    A+++V+ +K RF G+   +  F+
Sbjct: 96  DDLLLGFNTFLPKGYKITLQPEDEKP---KKPVDFQVAIEFVNRIKARFGGDDRAYKKFL 155

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDP 180
             L++Y++  K ++E+++EV +L QDH DL+  F  FLP     + S NDP
Sbjct: 156 DILNMYRKETKSINEVYQEVTLLFQDHEDLLGEFVHFLP-DFRGSVSVNDP 202

[Close]

BLAST of Cp4.1LG11g07500 vs. Swiss-Prot
Match: SNL2_ARATH (Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-32
Identity = 67/163 (41.10%), Postives = 110/163 (67.48%), Query Frame = 1


Query: 5   GEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRL 64
           GE   + +KLT +DAL +LK VK++  ++ +KY+ FL++MKD   Q+ D  GVI+ VK L
Sbjct: 39  GEGGINTQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGVISRVKEL 98

Query: 65  FRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIF 124
           F+GHN+LI GFNTFLP+ + I   L+D   P  ++ ++  +A+ +V+++K RF+    ++
Sbjct: 99  FKGHNNLIFGFNTFLPKGFEIT--LDDVEAP-SKKTVEFEEAISFVNKIKTRFQHNELVY 158

Query: 125 NSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLP 168
            SF+  L++Y++  K ++E++ EV  L +DH DL+E F  FLP
Sbjct: 159 KSFLEILNMYRKDNKDITEVYNEVSTLFEDHSDLLEEFTRFLP 198

[Close]

BLAST of Cp4.1LG11g07500 vs. TrEMBL
Match: A0A0A0KQL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G484650 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.0e-52
Identity = 95/169 (56.21%), Postives = 135/169 (79.88%), Query Frame = 1


Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS++KLT  DALE+LKNVKD+  ++ EKYE+FL++MK+   QRID VGVI  VK+LF+GH
Sbjct: 26  GSLQKLTTNDALEYLKNVKDIFRDKKEKYEDFLEVMKEFKAQRIDTVGVIARVKQLFKGH 85

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            DLILGFNTFLP+ YAI CPLEDETPP++++P++  +A+++V ++K RFEG+ H++ SF+
Sbjct: 86  RDLILGFNTFLPKGYAITCPLEDETPPQKKKPVQFEEAINFVGKIKTRFEGDNHVYKSFL 145

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN 178
             L+LY++  K +SE++REV  L+QDHPDL+  F  FLP  S TT++N+
Sbjct: 146 EILNLYRKENKSISEVYREVSALLQDHPDLLREFVHFLPDASATTSNNH 194

[Close]

BLAST of Cp4.1LG11g07500 vs. TrEMBL
Match: B9S2H7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0699610 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-42
Identity = 87/201 (43.28%), Postives = 134/201 (66.67%), Query Frame = 1


Query: 5   GEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRL 64
           G A G  +KLT  DAL +LK VKD+  ++ +KY++FL++MKD   QRID  GVI  VK L
Sbjct: 55  GGASGGGQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKDL 114

Query: 65  FRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIF 124
           F+GH DLILGFNTFLP+ Y I  PLEDE PP +++P++  +A+++V+++K RF+G+ H++
Sbjct: 115 FKGHRDLILGFNTFLPKGYEITLPLEDEQPP-QKKPVEFEEAINFVNKIKTRFQGDDHVY 174

Query: 125 NSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIG 184
            SF+  L++Y++  K ++E+++EV  L QDH DL+  F  FLP  S T +++  P     
Sbjct: 175 KSFLDILNMYRKENKSITEVYQEVATLFQDHNDLLMEFTHFLPDSSATASAHYAPSVRNS 234

Query: 185 VDRPDEEGMSLIEKMNQKLRE 206
           + R     M  + +M+   +E
Sbjct: 235 IHRDRSSAMPTMRQMHIDKKE 254

[Close]

BLAST of Cp4.1LG11g07500 vs. TrEMBL
Match: A9T7L8_PHYPA (Putative histone deacetylase complex, SIN3 component (Fragment) OS=Physcomitrella patens subsp. patens GN=SNT1506 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.2e-42
Identity = 92/236 (38.98%), Postives = 147/236 (62.29%), Query Frame = 1


Query: 12  RKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHNDL 71
           ++LT +DAL +LK VK+   ++ EKY+EFL++MKD   QR+D  GVIT VK LF+GH  L
Sbjct: 1   QRLTTDDALAYLKAVKEKFKDDKEKYDEFLEVMKDFKAQRVDTAGVITRVKDLFKGHRQL 60

Query: 72  ILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMRNL 131
           ILGFNTFLP+ Y I  PLE++   +++  ++   A++YV+++K RF+ + H++ +F+  L
Sbjct: 61  ILGFNTFLPRGYEITLPLEED---KKQPAVEFDQAINYVNKIKARFQTDEHVYKTFLEIL 120

Query: 132 HLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLP---------------CPSLTTTSN 191
           ++Y++G K ++E+++EV  L ++H DL+E F  FLP                P  +T   
Sbjct: 121 NMYRKGNKSINEVYQEVASLFENHGDLLEEFTYFLPGQSQAGEVGEGFSGSVPQASTDDK 180

Query: 192 NDPEQNIGVDRPDEEGMSLIEKMNQKLREVDVPQQFVKCLDVFDREIITPSELHSM 233
              +  IGV  P        +K+  +LR  D  Q+F+KCL++F +EII+  EL S+
Sbjct: 181 KAVKGVIGVQYP------FFDKVKARLRSRDTYQEFLKCLNIFSQEIISRDELQSL 227

[Close]

BLAST of Cp4.1LG11g07500 vs. TrEMBL
Match: A0A067H4P8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001681mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 87/201 (43.28%), Postives = 131/201 (65.17%), Query Frame = 1


Query: 5   GEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRL 64
           G   G  +KLT  DAL +LK VKD+  ++ EKY++FL++MKD   QRID  GVI  VK L
Sbjct: 34  GGGGGGAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKEL 93

Query: 65  FRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIF 124
           F+GH DLILGFNTFLP+ Y I  PLEDE PP  ++P++  +A+++V+++K RF+G+ H++
Sbjct: 94  FKGHRDLILGFNTFLPKGYEITLPLEDEQPP-PKKPVEFEEAINFVNKIKTRFQGDDHVY 153

Query: 125 NSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIG 184
            SF+  L++Y++  K ++E+++EV  L QDHPDL+E F  FLP  S   + +  P     
Sbjct: 154 KSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPDSSGAASIHYVPSGRNS 213

Query: 185 VDRPDEEGMSLIEKMNQKLRE 206
           + R     M    +++   +E
Sbjct: 214 ILRDRSSAMPTARQVHVDKKE 233

[Close]

BLAST of Cp4.1LG11g07500 vs. TrEMBL
Match: V4TPJ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030507mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 87/201 (43.28%), Postives = 131/201 (65.17%), Query Frame = 1


Query: 5   GEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRL 64
           G   G  +KLT  DAL +LK VKD+  ++ EKY++FL++MKD   QRID  GVI  VK L
Sbjct: 34  GGGGGGAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKEL 93

Query: 65  FRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIF 124
           F+GH DLILGFNTFLP+ Y I  PLEDE PP  ++P++  +A+++V+++K RF+G+ H++
Sbjct: 94  FKGHRDLILGFNTFLPKGYEITLPLEDEQPP-PKKPVEFEEAINFVNKIKTRFQGDDHVY 153

Query: 125 NSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIG 184
            SF+  L++Y++  K ++E+++EV  L QDHPDL+E F  FLP  S   + +  P     
Sbjct: 154 KSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPDSSGAASIHYVPSGRNS 213

Query: 185 VDRPDEEGMSLIEKMNQKLRE 206
           + R     M    +++   +E
Sbjct: 214 ILRDRSSAMPTARQVHVDKKE 233

[Close]

BLAST of Cp4.1LG11g07500 vs. TAIR10
Match: AT1G24190.1 (AT1G24190.1 SIN3-like 3)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-39
Identity = 82/193 (42.49%), Postives = 126/193 (65.28%), Query Frame = 1


Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS +KLT  DAL +LK VKD   ++  KY+EFL++MK+   QR+D  GVIT VK LF+GH
Sbjct: 5   GSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGH 64

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            +LILGFNTFLP+ + I    ED  PP ++R ++  +A+ +V+++K RF+G+  ++ SF+
Sbjct: 65  QELILGFNTFLPKGFEITLQPEDGQPPLKKR-VEFEEAISFVNKIKTRFQGDDRVYKSFL 124

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIGVDRP 188
             L++Y+R  K ++E+++EV +L +DH DL+  F  FLP  S T +    P     V   
Sbjct: 125 DILNMYRRDSKSITEVYQEVAILFRDHSDLLVEFTHFLPDTSATASI---PSVKTSV--- 184

Query: 189 DEEGMSLIEKMNQ 202
            E G+SL +K ++
Sbjct: 185 RERGVSLADKKDR 190

[Close]

BLAST of Cp4.1LG11g07500 vs. TAIR10
Match: AT1G70060.1 (AT1G70060.1 SIN3-like 4)

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-39
Identity = 72/168 (42.86%), Postives = 116/168 (69.05%), Query Frame = 1


Query: 10  SIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHN 69
           S +KLT  DAL +LK VKD   ++ +KY+EFL++MKD   QR+D  GVI  VK LF+G+ 
Sbjct: 6   SAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKELFKGNR 65

Query: 70  DLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMR 129
           +LILGFNTFLP+ + I    ED+ P   ++P++  +A+ +V+++K RF+G+  ++ SF+ 
Sbjct: 66  ELILGFNTFLPKGFEITLRPEDDQPAAPKKPVEFEEAISFVNKIKTRFQGDDRVYKSFLD 125

Query: 130 NLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN 178
            L++Y++  K ++E++ EV +L +DH DL+  F  FLP  S T ++N+
Sbjct: 126 ILNMYRKENKSITEVYHEVAILFRDHHDLLGEFTHFLPDTSATASTND 173

[Close]

BLAST of Cp4.1LG11g07500 vs. TAIR10
Match: AT3G01320.1 (AT3G01320.1 SIN3-like 1)

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-35
Identity = 68/156 (43.59%), Postives = 106/156 (67.95%), Query Frame = 1


Query: 12  RKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHNDL 71
           +KLT  DAL +L+ VK++  ++ EKY+ FL++MKD   QR D  GVI  VK LF+GHN+L
Sbjct: 51  QKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNNL 110

Query: 72  ILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMRNL 131
           I GFNTFLP+ Y I    ED+  P++   ++   A+++V+++K RF+ + H++ SF+  L
Sbjct: 111 IYGFNTFLPKGYEITLIEEDDALPKKT--VEFEQAINFVNKIKMRFKHDEHVYKSFLEIL 170

Query: 132 HLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLP 168
           ++Y++  K + E++ EV +L Q H DL+E F  FLP
Sbjct: 171 NMYRKENKEIKEVYNEVSILFQGHLDLLEQFTRFLP 204

[Close]

BLAST of Cp4.1LG11g07500 vs. TAIR10
Match: AT1G59890.2 (AT1G59890.2 SIN3-like 5)

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-34
Identity = 75/171 (43.86%), Postives = 109/171 (63.74%), Query Frame = 1


Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           G+   LT  DAL +LK VKD+  +  EKYE FL +MKD   QR+D  GVI  VK LF+G+
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
           +DL+LGFNTFLP+ Y I    EDE P   ++P+    A+++V+ +K RF G+   +  F+
Sbjct: 96  DDLLLGFNTFLPKGYKITLQPEDEKP---KKPVDFQVAIEFVNRIKARFGGDDRAYKKFL 155

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDP 180
             L++Y++  K ++E+++EV +L QDH DL+  F  FLP     + S NDP
Sbjct: 156 DILNMYRKETKSINEVYQEVTLLFQDHEDLLGEFVHFLP-DFRGSVSVNDP 202

[Close]

BLAST of Cp4.1LG11g07500 vs. TAIR10
Match: AT5G15020.1 (AT5G15020.1 SIN3-like 2)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-33
Identity = 67/163 (41.10%), Postives = 110/163 (67.48%), Query Frame = 1


Query: 5   GEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRL 64
           GE   + +KLT +DAL +LK VK++  ++ +KY+ FL++MKD   Q+ D  GVI+ VK L
Sbjct: 39  GEGGINTQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGVISRVKEL 98

Query: 65  FRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIF 124
           F+GHN+LI GFNTFLP+ + I   L+D   P  ++ ++  +A+ +V+++K RF+    ++
Sbjct: 99  FKGHNNLIFGFNTFLPKGFEIT--LDDVEAP-SKKTVEFEEAISFVNKIKTRFQHNELVY 158

Query: 125 NSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLP 168
            SF+  L++Y++  K ++E++ EV  L +DH DL+E F  FLP
Sbjct: 159 KSFLEILNMYRKDNKDITEVYNEVSTLFEDHSDLLEEFTRFLP 198

[Close]

BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: gi|778702996|ref|XP_011655296.1| (PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.9e-52
Identity = 95/169 (56.21%), Postives = 135/169 (79.88%), Query Frame = 1


Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS++KLT  DALE+LKNVKD+  ++ EKYE+FL++MK+   QRID VGVI  VK+LF+GH
Sbjct: 35  GSLQKLTTNDALEYLKNVKDIFRDKKEKYEDFLEVMKEFKAQRIDTVGVIARVKQLFKGH 94

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            DLILGFNTFLP+ YAI CPLEDETPP++++P++  +A+++V ++K RFEG+ H++ SF+
Sbjct: 95  RDLILGFNTFLPKGYAITCPLEDETPPQKKKPVQFEEAINFVGKIKTRFEGDNHVYKSFL 154

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN 178
             L+LY++  K +SE++REV  L+QDHPDL+  F  FLP  S TT++N+
Sbjct: 155 EILNLYRKENKSISEVYREVSALLQDHPDLLREFVHFLPDASATTSNNH 203

[Close]

BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: gi|700196007|gb|KGN51184.1| (hypothetical protein Csa_5G484650 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.9e-52
Identity = 95/169 (56.21%), Postives = 135/169 (79.88%), Query Frame = 1


Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS++KLT  DALE+LKNVKD+  ++ EKYE+FL++MK+   QRID VGVI  VK+LF+GH
Sbjct: 26  GSLQKLTTNDALEYLKNVKDIFRDKKEKYEDFLEVMKEFKAQRIDTVGVIARVKQLFKGH 85

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            DLILGFNTFLP+ YAI CPLEDETPP++++P++  +A+++V ++K RFEG+ H++ SF+
Sbjct: 86  RDLILGFNTFLPKGYAITCPLEDETPPQKKKPVQFEEAINFVGKIKTRFEGDNHVYKSFL 145

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN 178
             L+LY++  K +SE++REV  L+QDHPDL+  F  FLP  S TT++N+
Sbjct: 146 EILNLYRKENKSISEVYREVSALLQDHPDLLREFVHFLPDASATTSNNH 194

[Close]

BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: gi|659131489|ref|XP_008465713.1| (PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X1 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 94/169 (55.62%), Postives = 133/169 (78.70%), Query Frame = 1


Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS++KLT  DALE+LKNVK +  +  EKYE+FL++MK+   QRID VGVI  VK+LF+GH
Sbjct: 35  GSLQKLTTNDALEYLKNVKTIFRDRKEKYEDFLEVMKEFKAQRIDTVGVIARVKQLFKGH 94

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            DLILGFNTFLP+ YAI CPLEDETPP++++P++  +A+++V ++K RFEG+ H++ SF+
Sbjct: 95  RDLILGFNTFLPKGYAITCPLEDETPPQKKKPVQFEEAINFVGKIKTRFEGDNHVYKSFL 154

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN 178
             L+LY++  K +SE++REV  L+QDHPDL+  F  FLP  S TT++N+
Sbjct: 155 EILNLYRKENKSISEVYREVSALLQDHPDLLREFVHFLPDASATTSNNH 203

[Close]

BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: gi|255558338|ref|XP_002520196.1| (PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X1 [Ricinus communis])

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 87/201 (43.28%), Postives = 134/201 (66.67%), Query Frame = 1


Query: 5   GEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRL 64
           G A G  +KLT  DAL +LK VKD+  ++ +KY++FL++MKD   QRID  GVI  VK L
Sbjct: 55  GGASGGGQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKDL 114

Query: 65  FRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIF 124
           F+GH DLILGFNTFLP+ Y I  PLEDE PP +++P++  +A+++V+++K RF+G+ H++
Sbjct: 115 FKGHRDLILGFNTFLPKGYEITLPLEDEQPP-QKKPVEFEEAINFVNKIKTRFQGDDHVY 174

Query: 125 NSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIG 184
            SF+  L++Y++  K ++E+++EV  L QDH DL+  F  FLP  S T +++  P     
Sbjct: 175 KSFLDILNMYRKENKSITEVYQEVATLFQDHNDLLMEFTHFLPDSSATASAHYAPSVRNS 234

Query: 185 VDRPDEEGMSLIEKMNQKLRE 206
           + R     M  + +M+   +E
Sbjct: 235 IHRDRSSAMPTMRQMHIDKKE 254

[Close]

BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: gi|1000964302|ref|XP_015575286.1| (PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Ricinus communis])

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 87/201 (43.28%), Postives = 134/201 (66.67%), Query Frame = 1


Query: 5   GEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRL 64
           G A G  +KLT  DAL +LK VKD+  ++ +KY++FL++MKD   QRID  GVI  VK L
Sbjct: 55  GGASGGGQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKDL 114

Query: 65  FRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIF 124
           F+GH DLILGFNTFLP+ Y I  PLEDE PP +++P++  +A+++V+++K RF+G+ H++
Sbjct: 115 FKGHRDLILGFNTFLPKGYEITLPLEDEQPP-QKKPVEFEEAINFVNKIKTRFQGDDHVY 174

Query: 125 NSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIG 184
            SF+  L++Y++  K ++E+++EV  L QDH DL+  F  FLP  S T +++  P     
Sbjct: 175 KSFLDILNMYRKENKSITEVYQEVATLFQDHNDLLMEFTHFLPDSSATASAHYAPSVRNS 234

Query: 185 VDRPDEEGMSLIEKMNQKLRE 206
           + R     M  + +M+   +E
Sbjct: 235 IHRDRSSAMPTMRQMHIDKKE 254

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SNL3_ARATH	3.1e-38	42.49	Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana GN=SNL3 PE=...	[more]
SNL4_ARATH	9.1e-38	42.86	Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=...	[more]
SNL1_ARATH	4.7e-34	43.59	Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=...	[more]
SNL5_ARATH	3.0e-33	43.86	Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana GN=SNL5 PE=...	[more]
SNL2_ARATH	2.0e-32	41.10	Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=...	[more]

BLAST of Cp4.1LG11g07500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQL9_CUCSA	2.0e-52	56.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G484650 PE=4 SV=1	[more]
B9S2H7_RICCO	1.5e-42	43.28	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0699610 PE=4 SV=1	[more]
A9T7L8_PHYPA	4.2e-42	38.98	Putative histone deacetylase complex, SIN3 component (Fragment) OS=Physcomitrell...	[more]
A0A067H4P8_CITSI	1.2e-41	43.28	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001681mg PE=4 SV=1	[more]
V4TPJ6_9ROSI	1.2e-41	43.28	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030507mg PE=4 SV=1	[more]

BLAST of Cp4.1LG11g07500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24190.1	1.8e-39	42.49	SIN3-like 3	[more]
AT1G70060.1	5.1e-39	42.86	SIN3-like 4	[more]
AT3G01320.1	2.6e-35	43.59	SIN3-like 1	[more]
AT1G59890.2	1.7e-34	43.86	SIN3-like 5	[more]
AT5G15020.1	1.1e-33	41.10	SIN3-like 2	[more]

BLAST of Cp4.1LG11g07500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778702996\|ref\|XP_011655296.1\|	2.9e-52	56.21	PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X1 [Cucumis sati...	[more]
gi\|700196007\|gb\|KGN51184.1\|	2.9e-52	56.21	hypothetical protein Csa_5G484650 [Cucumis sativus]	[more]
gi\|659131489\|ref\|XP_008465713.1\|	2.5e-51	55.62	PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X1 [Cucumis melo...	[more]
gi\|255558338\|ref\|XP_002520196.1\|	2.1e-42	43.28	PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X1 [Ricinus comm...	[more]
gi\|1000964302\|ref\|XP_015575286.1\|	2.1e-42	43.28	PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Ricinus comm...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003822	PAH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07500.1	Cp4.1LG11g07500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003822	Paired amphipathic helix	GENE3D	G3DSA:1.20.1160.11		coord: 98..167 score: 3.4E-16coord: 13..81 score: 4.0
IPR003822	Paired amphipathic helix	PFAM	PF02671	PAH	coord: 123..166 score: 1.2E-8coord: 35..79 score: 1.5
IPR003822	Paired amphipathic helix	PROFILE	PS51477	PAH	coord: 12..82 score: 14.917coord: 99..169 score: 15
IPR003822	Paired amphipathic helix	unknown	SSF47762	PAH2 domain	coord: 98..167 score: 5.1E-18coord: 13..80 score: 1.44
None	No IPR available	PANTHER	PTHR12346	SIN3B-RELATED	coord: 3..205 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g07500	Wax gourd	cpewgoB0129
Cp4.1LG11g07500	Cucurbita pepo (Zucchini)	cpecpeB149
Cp4.1LG11g07500	Cucumber (Gy14) v1	cgycpeB0723
Cp4.1LG11g07500	Cucurbita maxima (Rimu)	cmacpeB181
Cp4.1LG11g07500	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g07500	Cucurbita moschata (Rifu)	cmocpeB155
Cp4.1LG11g07500	Cucurbita moschata (Rifu)	cmocpeB726
Cp4.1LG11g07500	Wild cucumber (PI 183967)	cpecpiB115
Cp4.1LG11g07500	Cucumber (Chinese Long) v2	cpecuB117
Cp4.1LG11g07500	Bottle gourd (USVL1VR-Ls)	cpelsiB084
Cp4.1LG11g07500	Watermelon (Charleston Gray)	cpewcgB089
Cp4.1LG11g07500	Watermelon (Charleston Gray)	cpewcgB123
Cp4.1LG11g07500	Watermelon (97103) v1	cpewmB097
Cp4.1LG11g07500	Melon (DHL92) v3.5.1	cpemeB078
Cp4.1LG11g07500	Cucumber (Gy14) v2	cgybcpeB593
Cp4.1LG11g07500	Melon (DHL92) v3.6.1	cpemedB100
Cp4.1LG11g07500	Silver-seed gourd	carcpeB1477
Cp4.1LG11g07500	Cucumber (Chinese Long) v3	cpecucB0129