Cp4.1LG11g07340 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	TIR-NBS-LRR disease resistance protein
Location	Cp4.1LG11 : 5988840 .. 5989235 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAAAAAACAGTCAATGTAGAATCTTCTGAGCCTGAAAAAATGTGTAGGTTGTGGTTGGTACAAGATGTTTTGAAGGTGTTCAATGATAATTCAGTGAGTAGCACTTACCCAAACTTTCTTTAATTTACTTGTTTGCTATACTTGGTGATCGAAAATGTTTGTCAAAGTAAGTCGATAGTAATGTTGAATTACTAAACTATGAGTTTGTAGGGAACCGATGCAATTAAAGCTATAAAGTTGGAGTTACCAAAACCCACAAGGTTGGATGTTGATCCTCGAGCTTTTAGAAACATGAAAAACCTAAGATTGCTAATGGTTCAAAATGCAAGATTTTTCACTAATATTGAATATCTACGGAATATCTACAGATTTTTCACAATACAAACATGA

mRNA sequence

ATGGTCAATGTAGAATCTTCTGAGCCTGAAAAAATGTGTAGGTTGTGGTTGGTACAAGATGTTTTGAAGGTGTTCAATGATAATTCAGGAACCGATGCAATTAAAGCTATAAAGTTGGAGTTACCAAAACCCACAAGGTTGGATGTTGATCCTCGAGCTTTTAGAAACATGAAAAACCTAAGATTGCTAATGGTTCAAAATGCAAGATTTTTCACTAATATTGAATATCTACGGAATATCTACAGATTTTTCACAATACAAACATGA

Coding sequence (CDS)

ATGGTCAATGTAGAATCTTCTGAGCCTGAAAAAATGTGTAGGTTGTGGTTGGTACAAGATGTTTTGAAGGTGTTCAATGATAATTCAGGAACCGATGCAATTAAAGCTATAAAGTTGGAGTTACCAAAACCCACAAGGTTGGATGTTGATCCTCGAGCTTTTAGAAACATGAAAAACCTAAGATTGCTAATGGTTCAAAATGCAAGATTTTTCACTAATATTGAATATCTACGGAATATCTACAGATTTTTCACAATACAAACATGA

Protein sequence

MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNLRLLMVQNARFFTNIEYLRNIYRFFTIQT

Homology

[Close]

BLAST of Cp4.1LG11g07340 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-23
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ES EP K  RLWLV DVLKVF DNSGT A+KAIKL+L  PTRLDVD RAFRNMKNL
Sbjct: 505 IVNGESFEPGKRSRLWLVHDVLKVFADNSGTIAVKAIKLDLSNPTRLDVDSRAFRNMKNL 564

Query: 61  RLLMVQNARFFTNIEYL 78
           RLL+V+NARF TN+EYL
Sbjct: 565 RLLIVRNARFSTNVEYL 581

[Close]

BLAST of Cp4.1LG11g07340 vs. TrEMBL
Match: A0A0A0LFS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022790 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-21
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +V+ ESSEP K  RLWL  D+ +VF +NSGTDA+KAIKL+LPK TRL+VDPRAF +MKNL
Sbjct: 504 IVHNESSEPGKRSRLWLEHDIWEVFVNNSGTDAVKAIKLDLPKSTRLNVDPRAFGSMKNL 563

Query: 61  RLLMVQNARFFTNIEYLRN 80
           RLL+++NARF T I YL N
Sbjct: 564 RLLIIRNARFCTKIRYLPN 582

[Close]

BLAST of Cp4.1LG11g07340 vs. TrEMBL
Match: D9I8I4_CUCSA (TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-19
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 5   ESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNLRLLM 64
           ES E  K  RLWLVQDV +V  +NSGTDA+K IKL+ P  TRLDVDP+AFR MKNLRLL+
Sbjct: 489 ESLELGKRSRLWLVQDVWEVLVNNSGTDAVKGIKLDFPNSTRLDVDPQAFRKMKNLRLLI 548

Query: 65  VQNARFFTNIEYL 78
           VQNARF T IEYL
Sbjct: 549 VQNARFSTKIEYL 561

[Close]

BLAST of Cp4.1LG11g07340 vs. TrEMBL
Match: A6YTE0_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-19
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 5   ESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNLRLLM 64
           ES E  K  RLWLVQDV  V  +NSGTDA+KAIKL+ P PT+LDVD +AFR MKNLRLL+
Sbjct: 460 ESLELGKRSRLWLVQDVWDVLVNNSGTDAVKAIKLDFPNPTKLDVDLQAFRKMKNLRLLI 519

Query: 65  VQNARFFTNIEYL 78
           VQNARF T IEYL
Sbjct: 520 VQNARFCTKIEYL 532

[Close]

BLAST of Cp4.1LG11g07340 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 5   ESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNLRLLM 64
           ES E  K  RLWLVQDV +V  +NSGTDAIKAIKL+ P PTRL V+ +AFR MKNLRLL+
Sbjct: 518 ESLELGKRSRLWLVQDVWEVLVNNSGTDAIKAIKLDFPNPTRLGVNSQAFRKMKNLRLLI 577

Query: 65  VQNARFFTNIEYL 78
           VQNARF T IEYL
Sbjct: 578 VQNARFSTKIEYL 590

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: gi|778666709|ref|XP_011648797.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-23
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ES EP K  RLWLV DVLKVF DNSGT A+KAIKL+L  PTRLDVD RAFRNMKNL
Sbjct: 505 IVNGESFEPGKRSRLWLVHDVLKVFADNSGTIAVKAIKLDLSNPTRLDVDSRAFRNMKNL 564

Query: 61  RLLMVQNARFFTNIEYL 78
           RLL+V+NARF TN+EYL
Sbjct: 565 RLLIVRNARFSTNVEYL 581

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: gi|700205747|gb|KGN60866.1| (hypothetical protein Csa_2G020890 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-23
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ES EP K  RLWLV DVLKVF DNSGT A+KAIKL+L  PTRLDVD RAFRNMKNL
Sbjct: 505 IVNGESFEPGKRSRLWLVHDVLKVFADNSGTIAVKAIKLDLSNPTRLDVDSRAFRNMKNL 564

Query: 61  RLLMVQNARFFTNIEYL 78
           RLL+V+NARF TN+EYL
Sbjct: 565 RLLIVRNARFSTNVEYL 581

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: gi|659070453|ref|XP_008455171.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ES EP K  RLWLV DVLKVF DNSGT A+KAIKL+L  PTRLDVD +AFRNMKNL
Sbjct: 503 IVNGESFEPGKRSRLWLVHDVLKVFADNSGTIAVKAIKLDLSNPTRLDVDSQAFRNMKNL 562

Query: 61  RLLMVQNARFFTNIEYL 78
           RLL+V+NA+F TN+EYL
Sbjct: 563 RLLIVRNAKFSTNVEYL 579

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: gi|659070451|ref|XP_008455159.1| (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 52/79 (65.82%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +V+ ESSEP K  RLWLVQD+ +VF +NSGTDA+KAIKL+LP PT+L+VDP+AFR+MKNL
Sbjct: 351 IVHNESSEPGKRSRLWLVQDIWEVFVNNSGTDAVKAIKLDLPNPTKLNVDPQAFRSMKNL 410

Query: 61  RLLMVQNARFFTNIEYLRN 80
           RLL+++NA+F   I+YL N
Sbjct: 411 RLLIIRNAQFCRKIKYLPN 429

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: gi|659070449|ref|XP_008455151.1| (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 52/79 (65.82%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +V+ ESSEP K  RLWLVQD+ +VF +NSGTDA+KAIKL+LP PT+L+VDP+AFR+MKNL
Sbjct: 538 IVHNESSEPGKRSRLWLVQDIWEVFVNNSGTDAVKAIKLDLPNPTKLNVDPQAFRSMKNL 597

Query: 61  RLLMVQNARFFTNIEYLRN 80
           RLL+++NA+F   I+YL N
Sbjct: 598 RLLIIRNAQFCRKIKYLPN 616

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g07340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLK3_CUCSA	1.4e-23	76.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1	[more]
A0A0A0LFS4_CUCSA	8.7e-21	67.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022790 PE=4 SV=1	[more]
D9I8I4_CUCSA	2.1e-19	71.23	TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1	[more]
A6YTE0_CUCME	4.8e-19	71.23	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=2	[more]
E5GB33_CUCME	1.4e-18	71.23	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cp4.1LG11g07340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g07340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666709\|ref\|XP_011648797.1\|	2.1e-23	76.62	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|700205747\|gb\|KGN60866.1\|	2.1e-23	76.62	hypothetical protein Csa_2G020890 [Cucumis sativus]	[more]
gi\|659070453\|ref\|XP_008455171.1\|	1.3e-22	74.03	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|659070451\|ref\|XP_008455159.1\|	3.3e-21	65.82	PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo]	[more]
gi\|659070449\|ref\|XP_008455151.1\|	3.3e-21	65.82	PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07340.1	Cp4.1LG11g07340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11017	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 14..84 score: 3.5
None	No IPR available	PANTHER	PTHR11017:SF174	SUBFAMILY NOT NAMED	coord: 14..84 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g07340	CsaV3_5G025850	Cucumber (Chinese Long) v3	cpecucB0129
Cp4.1LG11g07340	CsGy5G016580	Cucumber (Gy14) v2	cgybcpeB593

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g07340	Cucurbita pepo (Zucchini)	cpecpeB149
Cp4.1LG11g07340	Cucumber (Gy14) v1	cgycpeB0088
Cp4.1LG11g07340	Cucurbita maxima (Rimu)	cmacpeB181
Cp4.1LG11g07340	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g07340	Cucurbita moschata (Rifu)	cmocpeB155
Cp4.1LG11g07340	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g07340	Cucurbita moschata (Rifu)	cmocpeB726
Cp4.1LG11g07340	Wild cucumber (PI 183967)	cpecpiB119
Cp4.1LG11g07340	Cucumber (Chinese Long) v2	cpecuB121
Cp4.1LG11g07340	Bottle gourd (USVL1VR-Ls)	cpelsiB099
Cp4.1LG11g07340	Watermelon (Charleston Gray)	cpewcgB123
Cp4.1LG11g07340	Watermelon (97103) v1	cpewmB100
Cp4.1LG11g07340	Melon (DHL92) v3.5.1	cpemeB090
Cp4.1LG11g07340	Cucumber (Gy14) v2	cgybcpeB717
Cp4.1LG11g07340	Melon (DHL92) v3.6.1	cpemedB113
Cp4.1LG11g07340	Silver-seed gourd	carcpeB0191
Cp4.1LG11g07340	Cucumber (Chinese Long) v3	cpecucB0135